Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007996

Physical Location & Seq

Genomic Coordinates Forward (+)

13970392 .. 13972800

Gene Structure 2409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG066200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCAGATGGGGAAAAAGATGAAGAATAAAACGGACAGGGAGACGATTGATTCTAATCCGATCATTGATTTGAAGTCTATTATCCATCAGCATTCCCAGTTCATGGACAAGCTAGTGGAGCTCATCCCTGCTAGGTTCTATTTACCCAATGACGACGACGAGAAGCCATGGTTTCAAGGCCTCAGCAACCCTGCAAAAGCTTCAGCTAAGAAGGAAACGAAGAAAAACATCAAGAAAGCTCGCAGAGATCGATTGGATCCAGAGAAGACTTCTACAACAACCCTTGATTTGCTAAAGCAAAGTTTGGAAAAGGAGAAGTCGAATGAGGATGAGAGTGATAGTGGTGAAATGGAGACTAAACCTGTGGTGCCTGGTCTGGAAGGCGATGACAGGTCAGTGACATATGAAGAACTCCAGCAACGGCTTCGTCGTAAAATCGAACAGTTTCAGTCTGGTCGCAATTGTGGAGTTTCAGAGAGAGCAAGGAAGAGGAGTGAAAGGAAGGAGAGATATGAGAAAGGAGCTGATGACAGGAAACGGAAGAGAGAAACTGCATCTGATGAAAAGAAACCTACTAGTAGTGATTCGGTCGACAAGAAAGTTGAAGAAGACGTTGCAGAGGCTTCTAAAGGGCTCACATTCAGTCGCGTCAAACTTGGGGATGATGATGAGGTTGGAAAGAAGAAGAGAAGACTGTCAAAGGCGAAGGAGCTTGAGAGGGCCAAACAGTTGGAAGAAGTGAAGAAAGATCCAGAGAAAGGTAAGTCTCTCTTGTGGAAAACAGCAACCAGTAGAGCTGCTGGGGTTAAGGTTCATGATGATCCAAAGTTGCTGAAACAAAGCATAAAAAAGGAGAACAAGAAGCATCAGAAGAACGCTGAGAAATGGAAGGAAAGGGTTGAAACCACACACAAGTTGAAAGCAGACAAACAGAAGAAGAGATCTGATAATATTTCAGCAAAACTTGATGAGAAGAAAAAGCGCAAAATCGCAAAGAGAGAGAAGAAACTCATGCGGCCAGGATTTGAAGGTCGCAAAGAAGGTTATGTCAATGAGGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP14 SURF6

Protein Analysis

354

Amino Acids

40.97

Weight (kDa)

9.74

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP14	PF15459	28 - 88	1.3e-20	60S ribosome biogenesis protein Rrp14
SURF6	PF04935	159 - 329	6.5e-20	Surfeit locus protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05210 AT5G05210
fragaria_vesca	FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_4g05060 FvH4_4g05060
malus_domestica	MD13G1224300.v1.1 MD16G1229100.v1.1
prunus_persica	Prupe.1G051000_v2.0.a1
pyrus_communis	pycom13g19810
rosa_chinensis	RchiOBHm_Chr4g0395981
rosa_laevigata	RLG00000009583
rosa_multiflora	Rmu_sc0001103.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340770
rosa_rugosa	Rorug03G0353000
rosa_samantha	Rh4AG064400 Rh4AG066200 Rh4BG063100 Rh4CG069500 Rh4DG059600
rosa_wichuraiana	Rw4G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	591
AccII	CGCG	1 cut(s)	648
AciI	CCGC	1 cut(s)	1015
AclWI	GGATC	4 cut(s)	251, 264, 743, 815
AcoI	YGGCCR	1 cut(s)	1016
AcuI	CTGAAG	1 cut(s)	186
AfiI	CCNNNNNNNGG	2 cut(s)	103, 758
AgsI	TTSAA	6 cut(s)	73, 176, 605, 902, 919, 1028
AhlI	ACTAGT	1 cut(s)	575
AjnI	CCWGG	2 cut(s)	370, 1018
AluBI	AGCT	8 cut(s)	112, 121, 200, 206, 239, 524, 712, 797
AluI	AGCT	8 cut(s)	112, 121, 200, 206, 239, 524, 712, 797
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	3 cut(s)	35, 347, 771
AlwI	GGATC	4 cut(s)	251, 264, 743, 815
AoxI	GGCC	3 cut(s)	178, 720, 1016
ApeKI	GCWGC	1 cut(s)	797
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	984
AspS9I	GGNCC	1 cut(s)	720
AsuHPI	GGTGA	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	367
BanII	GRGCYC	2 cut(s)	123, 636
BbsI	GAAGAC	3 cut(s)	272, 615, 697
Bbv12I	GWGCWC	1 cut(s)	123
BbvCI	CCTCAGC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	784
BccI	CCATC	1 cut(s)	93
BceAI	ACGGC	1 cut(s)	437
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	2 cut(s)	372, 1020
BcoDI	GTCTC	3 cut(s)	35, 347, 771
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	3 cut(s)	113, 132, 576
BglII	AGATCT	1 cut(s)	941
BisI	GCNGC	2 cut(s)	798, 1016
BlsI	GCNGC	2 cut(s)	799, 1017
Bme1390I	CCNGG	2 cut(s)	372, 1020
BmgT120I	GGNCC	1 cut(s)	720
BmiI	GGNNCC	2 cut(s)	258, 369
BmrFI	CCNGG	2 cut(s)	372, 1020
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	2 cut(s)	563, 874
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	3 cut(s)	272, 615, 697
BpmI	CTGGAG	1 cut(s)	398
Bpu10I	CCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	734
Bsa29I	ATCGAT	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 758
Bse1I	ACTGG	2 cut(s)	97, 789
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	372, 1020
BseCI	ATCGAT	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	3 cut(s)	123, 334, 667
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	103, 758
BseMII	CTCAG	2 cut(s)	196, 870
BseNI	ACTGG	2 cut(s)	97, 789
BseRI	GAGGAG	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	784
BseYI	CCCAGC	1 cut(s)	800
Bsh1236I	CGCG	1 cut(s)	648
Bsh1285I	CGRYCG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	180, 722, 1018
BshNI	GGYRCC	1 cut(s)	367
BshVI	ATCGAT	1 cut(s)	250
BsiEI	CGRYCG	1 cut(s)	591
BsiHKAI	GWGCWC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	103, 758
BsmAI	GTCTC	3 cut(s)	35, 347, 771
BsmBI	CGTCTC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	180, 722, 1018
Bsp1286I	GDGCHC	2 cut(s)	123, 636
Bsp143I	GATC	6 cut(s)	60, 247, 256, 748, 820, 941
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	1 cut(s)	1015
BspANI	GGCC	3 cut(s)	180, 722, 1018
BspCNI	CTCAG	2 cut(s)	195, 871
BspDI	ATCGAT	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	2 cut(s)	258, 369
BspPI	GGATC	4 cut(s)	251, 264, 743, 815
BspT107I	GGYRCC	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	97, 789
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	6 cut(s)	60, 247, 256, 748, 820, 941
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	2 cut(s)	372, 1020
Bst4CI	ACNGT	3 cut(s)	444, 696, 729
Bst6I	CTCTTC	4 cut(s)	482, 536, 680, 932
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	3 cut(s)	182, 207, 879
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	123, 334, 667
BstFNI	CGCG	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	984
BstKTI	GATC	6 cut(s)	63, 250, 259, 751, 823, 944
BstMAI	GTCTC	3 cut(s)	35, 347, 771
BstMBI	GATC	6 cut(s)	60, 247, 256, 748, 820, 941
BstMCI	CGRYCG	1 cut(s)	591
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	2 cut(s)	372, 1020
BstSCI	CCNGG	2 cut(s)	370, 1018
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	784
BstV2I	GAAGAC	3 cut(s)	272, 615, 697
BstX2I	RGATCY	3 cut(s)	256, 748, 941
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	3 cut(s)	256, 748, 941
Bsu15I	ATCGAT	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	180, 722, 1018
BsuTUI	ATCGAT	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	399
BtsCI	GGATG	3 cut(s)	123, 334, 667
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	814
CfoI	GCGC	1 cut(s)	984
Cfr13I	GGNCC	1 cut(s)	720
ClaI	ATCGAT	1 cut(s)	250
CseI	GACGC	1 cut(s)	637
CviAII	CATG	4 cut(s)	103, 168, 815, 1012
DdeI	CTNAG	3 cut(s)	182, 207, 879
DpnI	GATC	6 cut(s)	62, 249, 258, 750, 822, 943
DpnII	GATC	6 cut(s)	60, 247, 256, 748, 820, 941
EaeI	YGGCCR	1 cut(s)	1016
Eam1104I	CTCTTC	4 cut(s)	482, 536, 680, 932
EarI	CTCTTC	4 cut(s)	482, 536, 680, 932
Ecl136II	GAGCTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	167
Eco147I	AGGCCT	1 cut(s)	180
Eco24I	GRGCYC	2 cut(s)	123, 636
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	186
EcoICRI	GAGCTC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	370, 1018
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	2 cut(s)	123, 636
ErhI	CCWWGG	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	4 cut(s)	106, 171, 818, 1015
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FatI	CATG	4 cut(s)	102, 167, 814, 1011
FauNDI	CATATG	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	2 cut(s)	798, 1016
FokI	GGATG	3 cut(s)	110, 341, 674
FriOI	GRGCYC	2 cut(s)	123, 636
Fsp4HI	GCNGC	2 cut(s)	798, 1016
FspBI	CTAG	3 cut(s)	113, 132, 576
GlaI	GCGC	1 cut(s)	983
GluI	GCNGC	2 cut(s)	798, 1016
GsaI	CCCAGC	1 cut(s)	804
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	3 cut(s)	180, 722, 1018
HgaI	GACGC	1 cut(s)	637
HhaI	GCGC	1 cut(s)	984
Hin1II	CATG	4 cut(s)	106, 171, 818, 1015
Hin6I	GCGC	1 cut(s)	982
HinP1I	GCGC	1 cut(s)	982
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	2 cut(s)	50, 584
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	5 cut(s)	60, 475, 559, 870, 946
Hpy188III	TCNNGA	5 cut(s)	232, 260, 377, 752, 815
Hpy8I	GTNNAC	1 cut(s)	592
Hpy99I	CGWCG	3 cut(s)	158, 161, 432
HpyAV	CCTTC	7 cut(s)	205, 374, 496, 700, 883, 1022, 1034
HpyCH4III	ACNGT	3 cut(s)	444, 696, 729
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	5 cut(s)	4, 194, 554, 617, 1061
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	3 cut(s)	182, 207, 879
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	4 cut(s)	106, 171, 818, 1015
HspAI	GCGC	1 cut(s)	982
Kzo9I	GATC	6 cut(s)	60, 247, 256, 748, 820, 941
LmnI	GCTCC	3 cut(s)	118, 521, 709
Lsp1109I	GCAGC	1 cut(s)	784
LweI	GCATC	2 cut(s)	563, 874
MaeI	CTAG	3 cut(s)	113, 132, 576
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	6 cut(s)	62, 249, 258, 750, 822, 943
MboI	GATC	6 cut(s)	60, 247, 256, 748, 820, 941
MfeI	CAATTG	1 cut(s)	460
MflI	RGATCY	3 cut(s)	256, 748, 941
MhlI	GDGCHC	2 cut(s)	123, 636
MluCI	AATT	1 cut(s)	460
MmeI	TCCRAC	2 cut(s)	655, 711
MnlI	CCTC	7 cut(s)	191, 319, 483, 613, 664, 711, 1048
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	1 cut(s)	807
MspR9I	CCNGG	2 cut(s)	372, 1020
MunI	CAATTG	1 cut(s)	460
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	372, 1020
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	6 cut(s)	60, 247, 256, 748, 820, 941
NlaIII	CATG	4 cut(s)	106, 171, 818, 1015
NlaIV	GGNNCC	2 cut(s)	258, 369
NmuCI	GTSAC	1 cut(s)	397
PagI	TCATGA	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	2 cut(s)	247, 427
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	50, 584
PflMI	CCANNNNNTGG	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	799, 1017
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	370, 1018
PspFI	CCCAGC	1 cut(s)	800
PspGI	CCWGG	2 cut(s)	370, 1018
PspN4I	GGNNCC	2 cut(s)	258, 369
PspPI	GGNCC	1 cut(s)	720
PsuI	RGATCY	3 cut(s)	256, 748, 941
SacI	GAGCTC	1 cut(s)	123
SalI	GTCGAC	1 cut(s)	590
SaqAI	TTAA	1 cut(s)	807
SatI	GCNGC	2 cut(s)	798, 1016
Sau3AI	GATC	6 cut(s)	60, 247, 256, 748, 820, 941
Sau96I	GGNCC	1 cut(s)	720
ScrFI	CCNGG	2 cut(s)	372, 1020
SduI	GDGCHC	2 cut(s)	123, 636
SfaNI	GCATC	2 cut(s)	563, 874
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	1 cut(s)	460
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	1015
SspI	AATATT	1 cut(s)	952
SspMI	CTAG	3 cut(s)	113, 132, 576
SstI	GAGCTC	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	370, 1018
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	444, 696, 729
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	4 cut(s)	250, 320, 438, 591
TaqII	GACCGA	1 cut(s)	577
TasI	AATT	1 cut(s)	460
TauI	GCSGC	1 cut(s)	1018
TfiI	GAWTC	2 cut(s)	50, 584
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	1 cut(s)	797
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	5 cut(s)	35, 91, 420, 576, 803
TspGWI	ACGGA	2 cut(s)	47, 553
TspRI	CASTG	1 cut(s)	402
Van91I	CCANNNNNTGG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	591
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	3 cut(s)	113, 132, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.