Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007996

Physical Location & Seq

Genomic Coordinates Reverse (-)

21893848 .. 21895331

Gene Structure 1484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1224300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTTAGTTGAGCTCATACCTGCTAGGTTCTATCTACCCGTTGATGATGATGATAAGCCATGGTTTCAAGGTCTCAGCAAGACTGCAAAAGCTTCAGCAAAGAAGGAATCAAAGGAAAACATTAAGAAAGCTCGAAGAGAACGGTTGGATCCAGAGAAGTCTTCTAAGACAACCCTTGATTTGCTAAAGCAAAGTTTGGAAAAGAAGTCAAACGATGAGAGTGATAGTGACGAAATAGAGATCAAGCCTGTGGTGCCTGGCCTGGAAGATGATGAATGTTCAGTGGAAGATGACGAACGTTCAGTGACATATGAACAACTCCAGCAACGGCTTCGTCGTAAACTTGATGAGTTTCGGGCTGGTCGGCATTGTGAAGGTTCAGAGAGAGCAAGGAAGAGGATTGAGCGAAGGGAAAGATATGAGAAGAAACGGAAGAGAGAAGCCGTATCTGATGGTAAGAAATCTACTGGTGATGATTCAGCGGCTAAAGTGGAGAAAGATGTTGCAGAGGCTGCAAAGGAGCTGACATTCGGTTATGTCAAACTTGGGGACGAAGATGAGCTTGGTAAGACAAATAAGAAGAAAAAATTGTCAAAGTTGCAGGAGCTTGAGAGGGCAAAACAGTTGCAAGAAGCCAAGAAAGATCCAGACAAGGGTGAGATAATCTCGCAGAAGCATTCTTGGAAAGCAGCAACAAGTAGAGCTGCTGGGATCAAGGTTCACGATGATCCAAAGTTGTTGAAACAAAGCATTCAGAAGGAGAAGAAGCGGCATCAGAAGAATGCCGAGAAATGGAAGGGAAGGGTTAAACCACGGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP14 SURF6

Protein Analysis

275

Amino Acids

31.75

Weight (kDa)

9.55

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP14	PF15459	2 - 52	5.1e-18	60S ribosome biogenesis protein Rrp14
SURF6	PF04935	126 - 269	1.2e-14	Surfeit locus protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05210 AT5G05210
fragaria_vesca	FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_4g05060 FvH4_4g05060
malus_domestica	MD13G1224300.v1.1 MD16G1229100.v1.1
prunus_persica	Prupe.1G051000_v2.0.a1
pyrus_communis	pycom13g19810
rosa_chinensis	RchiOBHm_Chr4g0395981
rosa_laevigata	RLG00000009583
rosa_multiflora	Rmu_sc0001103.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340770
rosa_rugosa	Rorug03G0353000
rosa_samantha	Rh4AG064400 Rh4AG066200 Rh4BG063100 Rh4CG069500 Rh4DG059600
rosa_wichuraiana	Rw4G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	253
AciI	CCGC	2 cut(s)	482, 769
AclI	AACGTT	1 cut(s)	298
AclWI	GGATC	5 cut(s)	143, 156, 638, 719, 722
AcuI	CTGAAG	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	653, 792
AgsI	TTSAA	2 cut(s)	68, 742
AjnI	CCWGG	2 cut(s)	256, 261
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AluBI	AGCT	7 cut(s)	13, 92, 131, 523, 562, 607, 704
AluI	AGCT	7 cut(s)	13, 92, 131, 523, 562, 607, 704
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	5 cut(s)	143, 156, 638, 719, 722
AlwNI	CAGNNNCTG	1 cut(s)	512
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	3 cut(s)	512, 689, 704
AsuHPI	GGTGA	2 cut(s)	482, 668
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	3 cut(s)	499, 691, 701
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	2 cut(s)	344, 428
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	2 cut(s)	258, 263
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	5 cut(s)	483, 513, 690, 705, 770
BlsI	GCNGC	5 cut(s)	484, 514, 691, 706, 771
Bme1390I	CCNGG	2 cut(s)	258, 263
BmiI	GGNNCC	2 cut(s)	150, 255
BmrFI	CCNGG	2 cut(s)	258, 263
BmsI	GCATC	1 cut(s)	781
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	629
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	59, 812
Bsc4I	CCNNNNNNNGG	2 cut(s)	653, 792
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	2 cut(s)	258, 263
BseDI	CCNNGG	2 cut(s)	59, 812
BseLI	CCNNNNNNNGG	2 cut(s)	653, 792
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	499, 691, 701
BseYI	CCCAGC	1 cut(s)	707
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	653, 792
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	563
BsmI	GAATGC	3 cut(s)	676, 750, 787
BsnI	GGCC	1 cut(s)	261
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	5 cut(s)	148, 240, 643, 711, 727
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	2 cut(s)	482, 769
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	150, 255
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	5 cut(s)	143, 156, 638, 719, 722
BspT107I	GGYRCC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	472
BssECI	CCNNGG	2 cut(s)	59, 812
BssMI	GATC	5 cut(s)	148, 240, 643, 711, 727
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	258, 263
Bst4CI	ACNGT	2 cut(s)	144, 624
Bst6I	CTCTTC	3 cut(s)	130, 389, 428
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstDEI	CTNAG	2 cut(s)	74, 165
BstDSI	CCRYGG	2 cut(s)	59, 812
BstKTI	GATC	5 cut(s)	151, 243, 646, 714, 730
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	5 cut(s)	148, 240, 643, 711, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	253, 512
BstNI	CCWGG	2 cut(s)	258, 263
BstSCI	CCNGG	2 cut(s)	256, 261
BstV1I	GCAGC	3 cut(s)	499, 691, 701
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	2 cut(s)	148, 643
BstYI	RGATCY	2 cut(s)	148, 643
BsuRI	GGCC	1 cut(s)	261
BtgI	CCRYGG	2 cut(s)	59, 812
BtsIMutI	CAGTG	2 cut(s)	288, 309
BveI	ACCTGC	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	512
CviAII	CATG	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	74, 165
DpnI	GATC	5 cut(s)	150, 242, 645, 713, 729
DpnII	GATC	5 cut(s)	148, 240, 643, 711, 727
Eam1104I	CTCTTC	3 cut(s)	130, 389, 428
EarI	CTCTTC	3 cut(s)	130, 389, 428
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	256, 261
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	1 cut(s)	63
FaiI	YATR	6 cut(s)	17, 61, 310, 312, 420, 537
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	5 cut(s)	483, 513, 690, 705, 770
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	5 cut(s)	483, 513, 690, 705, 770
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	5 cut(s)	483, 513, 690, 705, 770
GsaI	CCCAGC	1 cut(s)	711
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	2 cut(s)	107, 476
HphI	GGTGA	2 cut(s)	482, 668
Hpy166II	GTNNAC	2 cut(s)	341, 721
Hpy188I	TCNGA	4 cut(s)	382, 451, 756, 777
Hpy188III	TCNNGA	3 cut(s)	152, 647, 722
Hpy8I	GTNNAC	2 cut(s)	341, 721
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	6 cut(s)	97, 368, 402, 751, 790, 795
HpyCH4III	ACNGT	2 cut(s)	144, 624
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	5 cut(s)	86, 506, 515, 601, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	253, 512
HpyF3I	CTNAG	2 cut(s)	74, 165
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	148, 240, 643, 711, 727
LmnI	GCTCC	2 cut(s)	520, 604
Lsp1109I	GCAGC	3 cut(s)	499, 691, 701
LweI	GCATC	1 cut(s)	781
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	227, 304
MalI	GATC	5 cut(s)	150, 242, 645, 713, 729
MboI	GATC	5 cut(s)	148, 240, 643, 711, 727
MflI	RGATCY	2 cut(s)	148, 643
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	1 cut(s)	587
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	390, 502, 606
MseI	TTAA	2 cut(s)	123, 807
MspA1I	CMGCKG	1 cut(s)	482
MspR9I	CCNGG	2 cut(s)	258, 263
Mva1269I	GAATGC	3 cut(s)	676, 750, 787
MvaI	CCWGG	2 cut(s)	258, 263
MwoI	GCNNNNNNNGC	2 cut(s)	253, 512
NcoI	CCATGG	1 cut(s)	59
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	5 cut(s)	148, 240, 643, 711, 727
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	2 cut(s)	150, 255
NmeAIII	GCCGAG	1 cut(s)	811
NmuCI	GTSAC	2 cut(s)	227, 304
PcsI	WCGNNNNNNNCGW	1 cut(s)	334
PctI	GAATGC	3 cut(s)	676, 750, 787
PfeI	GAWTC	2 cut(s)	107, 476
PkrI	GCNGC	5 cut(s)	484, 514, 691, 706, 771
Psp124BI	GAGCTC	1 cut(s)	15
Psp1406I	AACGTT	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	256, 261
PspFI	CCCAGC	1 cut(s)	707
PspGI	CCWGG	2 cut(s)	256, 261
PspN4I	GGNNCC	2 cut(s)	150, 255
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	2 cut(s)	148, 643
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	123, 807
SatI	GCNGC	5 cut(s)	483, 513, 690, 705, 770
Sau3AI	GATC	5 cut(s)	148, 240, 643, 711, 727
ScrFI	CCNGG	2 cut(s)	258, 263
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	781
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	1 cut(s)	587
SsiI	CCGC	2 cut(s)	482, 769
SspMI	CTAG	1 cut(s)	24
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	256, 261
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	144, 624
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	587
TauI	GCSGC	2 cut(s)	485, 772
TfiI	GAWTC	2 cut(s)	107, 476
Tru1I	TTAA	2 cut(s)	123, 807
Tru9I	TTAA	2 cut(s)	123, 807
TscAI	CASTG	2 cut(s)	288, 309
TseFI	GTSAC	2 cut(s)	227, 304
TseI	GCWGC	3 cut(s)	512, 689, 704
Tsp45I	GTSAC	2 cut(s)	227, 304
TspDTI	ATGAA	2 cut(s)	288, 327
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	2 cut(s)	288, 309
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.