Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007996

Physical Location & Seq

Genomic Coordinates Reverse (-)

16133858 .. 16136011

Gene Structure 2154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGGAAAAAGATGAAGAATAAAACGGACTGGGAGACGATTGTCTCTAATCCGGTTATTGATTTGAAGTCTATTATTCATCAGCATTCTGAATTCATGGACAAGCTAGTTGAGCTCATCCCAGCGAGGTTCTATTTACCGAATGACGAGGATGATAAGCCATGGTTTCAAGGCCTAAGCAAGCCTGCCAAGGCTTCAGCTAAGAAGGAAACAAAGAAGAACATTAAGCAAGCTCGCAGGGATCGGTTGGATCCAGAGAAGACTTCTACAACAACCCTTGATTTGCTAAAGCAAAGTTTGGAAAAGGACATGTCGAACGAGGATGATAGTGATAGTGGTGAAATGGAGACTAAACCTGTGGTGCCAGGTCTGGAAGGTGATGACAGGTCAGTGACATATGAAGAACTCCAGCAACGGCTTCGTCGTAAAATTGAACAGTTTCAGTCTGGTCGCAATTGTGGAGTTTCAGAGAGAGCAAGGAAGAGGATTGAAAGGAAGGAGAGATTTGAGAAAGGGGCTGATGACAGGAAACGAAAGAGAGAAACTGCATCTGATGAAAAGAAACCTATTGGTACTGATTCAGTGAACAAGAATGTTGAACACGAGGTTGCAGAGGCTTCTAAAGGGCTCACATTCAGTCGTGTCAAACTTGGGGACGATGATGAAGTTGGAAAGAAGAAGAGGAGACTGTCAAAGGTGAAGGAGCTTGAGAGGGCCAAACAGTTGGAAGAAATGAAGAAAGATCCAGAGAAAGGCAAGTCTCTCTTGTGGAAAACAGCAACCAGTAGAGCTGCTGGAGTCAAGGTTCATGATGACCCAAAGTTGCTGAAACAAAGCATAAAAAAGGACCAGAAGAAGCATCAGAAGAACGCTGAGAAATGGAAGGAAAGGGTTGAAACCACACACAAGTTGAAACAAGACAAACAGAAGAAGAGATCTGATAATATATCAGCAAAACTTGATGAGAAGAAAAAGCGCAAAATTGCAAAGAGAGAGAAGAAACTAATGCGGCCAGGATTTGAAGGTCGCAAAAAAGGTTATGTCAATGGCGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP14 SURF6

Protein Analysis

353

Amino Acids

40.76

Weight (kDa)

9.82

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP14	PF15459	26 - 86	3.3e-21	60S ribosome biogenesis protein Rrp14
SURF6	PF04935	157 - 327	8.9e-20	Surfeit locus protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05210 AT5G05210
fragaria_vesca	FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_4g05060 FvH4_4g05060
malus_domestica	MD13G1224300.v1.1 MD16G1229100.v1.1
prunus_persica	Prupe.1G051000_v2.0.a1
pyrus_communis	pycom13g19810
rosa_chinensis	RchiOBHm_Chr4g0395981
rosa_laevigata	RLG00000009583
rosa_multiflora	Rmu_sc0001103.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340770
rosa_rugosa	Rorug03G0353000
rosa_samantha	Rh4AG064400 Rh4AG066200 Rh4BG063100 Rh4CG069500 Rh4DG059600
rosa_wichuraiana	Rw4G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AciI	CCGC	2 cut(s)	1009, 1050
AclWI	GGATC	4 cut(s)	245, 249, 258, 737
AcoI	YGGCCR	1 cut(s)	1010
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	1 cut(s)	752
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	8 cut(s)	67, 170, 434, 491, 599, 896, 913, 1022
AjnI	CCWGG	2 cut(s)	364, 1012
AloI	GAACNNNNNNTCC	2 cut(s)	789, 821
AluBI	AGCT	6 cut(s)	106, 115, 200, 233, 706, 791
AluI	AGCT	6 cut(s)	106, 115, 200, 233, 706, 791
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	5 cut(s)	29, 49, 341, 679, 765
AlwI	GGATC	4 cut(s)	245, 249, 258, 737
AoxI	GGCC	3 cut(s)	172, 714, 1010
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	978
AspS9I	GGNCC	2 cut(s)	714, 847
AsuHPI	GGTGA	3 cut(s)	350, 389, 709
AvaII	GGWCC	1 cut(s)	847
BamHI	GGATCC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	117, 630
BauI	CACGAG	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	778
BceAI	ACGGC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	2 cut(s)	366, 1014
BcoDI	GTCTC	5 cut(s)	29, 49, 341, 679, 765
BfaI	CTAG	1 cut(s)	107
BglII	AGATCT	1 cut(s)	935
BisI	GCNGC	2 cut(s)	792, 1010
BlsI	GCNGC	2 cut(s)	793, 1011
Bme1390I	CCNGG	2 cut(s)	366, 1014
Bme18I	GGWCC	1 cut(s)	847
BmgT120I	GGNCC	2 cut(s)	714, 847
BmiI	GGNNCC	2 cut(s)	252, 363
BmrFI	CCNGG	2 cut(s)	366, 1014
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	2 cut(s)	557, 868
BmuI	ACTGGG	1 cut(s)	40
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	266
BpmI	CTGGAG	2 cut(s)	392, 816
Bpu10I	CCTNAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	728
BsaJI	CCNNGG	2 cut(s)	161, 189
BsaWI	WCCGGW	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
Bse1I	ACTGG	2 cut(s)	35, 783
BseBI	CCWGG	2 cut(s)	366, 1014
BseDI	CCNNGG	2 cut(s)	161, 189
BseGI	GGATG	3 cut(s)	117, 157, 328
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	2 cut(s)	35, 783
BseRI	GAGGAG	1 cut(s)	697
BseXI	GCAGC	1 cut(s)	778
BseYI	CCCAGC	1 cut(s)	121
BshFI	GGCC	3 cut(s)	174, 716, 1012
BshNI	GGYRCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	668
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmAI	GTCTC	5 cut(s)	29, 49, 341, 679, 765
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	668
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	174, 716, 1012
Bsp1286I	GDGCHC	2 cut(s)	117, 630
Bsp143I	GATC	4 cut(s)	241, 250, 742, 935
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	2 cut(s)	1009, 1050
BspANI	GGCC	3 cut(s)	174, 716, 1012
BspCNI	CTCAG	1 cut(s)	865
BspHI	TCATGA	1 cut(s)	808
BspLI	GGNNCC	2 cut(s)	252, 363
BspPI	GGATC	4 cut(s)	245, 249, 258, 737
BspT107I	GGYRCC	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	35, 783
BssECI	CCNNGG	2 cut(s)	161, 189
BssMI	GATC	4 cut(s)	241, 250, 742, 935
BssSI	CACGAG	1 cut(s)	602
BssT1I	CCWWGG	2 cut(s)	161, 189
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	2 cut(s)	366, 1014
Bst4CI	ACNGT	3 cut(s)	438, 690, 723
Bst6I	CTCTTC	3 cut(s)	476, 674, 926
BstC8I	GCNNGC	4 cut(s)	182, 186, 231, 235
BstDEI	CTNAG	3 cut(s)	176, 201, 873
BstDSI	CCRYGG	1 cut(s)	161
BstF5I	GGATG	3 cut(s)	117, 157, 328
BstHHI	GCGC	1 cut(s)	978
BstKTI	GATC	4 cut(s)	244, 253, 745, 938
BstMAI	GTCTC	5 cut(s)	29, 49, 341, 679, 765
BstMBI	GATC	4 cut(s)	241, 250, 742, 935
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	2 cut(s)	366, 1014
BstNSI	RCATGY	1 cut(s)	313
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	364, 1012
BstV1I	GCAGC	1 cut(s)	778
BstV2I	GAAGAC	1 cut(s)	266
BstX2I	RGATCY	3 cut(s)	250, 742, 935
BstXI	CCANNNNNNTGG	1 cut(s)	724
BstYI	RGATCY	3 cut(s)	250, 742, 935
BsuRI	GGCC	3 cut(s)	174, 716, 1012
BtgI	CCRYGG	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	117, 157, 328
BtsIMutI	CAGTG	2 cut(s)	396, 588
Cac8I	GCNNGC	4 cut(s)	182, 186, 231, 235
CciI	TCATGA	1 cut(s)	808
CfoI	GCGC	1 cut(s)	978
Cfr13I	GGNCC	2 cut(s)	714, 847
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	4 cut(s)	97, 162, 310, 809
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	3 cut(s)	176, 201, 873
DpnI	GATC	4 cut(s)	243, 252, 744, 937
DpnII	GATC	4 cut(s)	241, 250, 742, 935
EaeI	YGGCCR	1 cut(s)	1010
Eam1104I	CTCTTC	3 cut(s)	476, 674, 926
EarI	CTCTTC	3 cut(s)	476, 674, 926
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	161, 189
Eco147I	AGGCCT	1 cut(s)	174
Eco24I	GRGCYC	2 cut(s)	117, 630
Eco47I	GGWCC	1 cut(s)	847
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	364, 1012
EcoT14I	CCWWGG	2 cut(s)	161, 189
EcoT38I	GRGCYC	2 cut(s)	117, 630
ErhI	CCWWGG	2 cut(s)	161, 189
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	4 cut(s)	100, 165, 313, 812
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FaqI	GGGAC	1 cut(s)	668
FatI	CATG	4 cut(s)	96, 161, 309, 808
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	792, 1010
FokI	GGATG	3 cut(s)	104, 164, 335
FriOI	GRGCYC	2 cut(s)	117, 630
Fsp4HI	GCNGC	2 cut(s)	792, 1010
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	977
GluI	GCNGC	2 cut(s)	792, 1010
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	2 cut(s)	392, 816
HaeIII	GGCC	3 cut(s)	174, 716, 1012
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	1 cut(s)	978
Hin1II	CATG	4 cut(s)	100, 165, 313, 812
Hin6I	GCGC	1 cut(s)	976
HinP1I	GCGC	1 cut(s)	976
HinfI	GANTC	2 cut(s)	578, 798
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	350, 389, 709
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	5 cut(s)	91, 469, 553, 864, 940
Hpy188III	TCNNGA	4 cut(s)	254, 371, 746, 809
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	1 cut(s)	426
HpyAV	CCTTC	6 cut(s)	199, 368, 490, 694, 877, 1016
HpyCH4III	ACNGT	3 cut(s)	438, 690, 723
HpyCH4V	TGCA	4 cut(s)	548, 611, 986, 1055
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	3 cut(s)	176, 201, 873
Hsp92II	CATG	4 cut(s)	100, 165, 313, 812
HspAI	GCGC	1 cut(s)	976
Kzo9I	GATC	4 cut(s)	241, 250, 742, 935
LmnI	GCTCC	1 cut(s)	703
Lsp1109I	GCAGC	1 cut(s)	778
LweI	GCATC	2 cut(s)	557, 868
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	4 cut(s)	243, 252, 744, 937
MboI	GATC	4 cut(s)	241, 250, 742, 935
MfeI	CAATTG	1 cut(s)	454
MflI	RGATCY	3 cut(s)	250, 742, 935
MhlI	GDGCHC	2 cut(s)	117, 630
MluCI	AATT	4 cut(s)	92, 429, 454, 981
MlyI	GAGTC	1 cut(s)	807
MmeI	TCCRAC	3 cut(s)	228, 649, 705
MnlI	CCTC	8 cut(s)	120, 142, 313, 477, 598, 607, 675, 705
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	1 cut(s)	225
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	366, 1014
MunI	CAATTG	1 cut(s)	454
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	2 cut(s)	366, 1014
MwoI	GCNNNNNNNGC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	4 cut(s)	241, 250, 742, 935
NlaIII	CATG	4 cut(s)	100, 165, 313, 812
NlaIV	GGNNCC	2 cut(s)	252, 363
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	1 cut(s)	313
PagI	TCATGA	1 cut(s)	808
PceI	AGGCCT	1 cut(s)	174
PciI	ACATGT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	421
PctI	GAATGC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	578
PkrI	GCNGC	2 cut(s)	793, 1011
PleI	GAGTC	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	806
PscI	ACATGT	1 cut(s)	309
PshAI	GACNNNNGTC	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	364, 1012
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	2 cut(s)	364, 1012
PspN4I	GGNNCC	2 cut(s)	252, 363
PspPI	GGNCC	2 cut(s)	714, 847
PsuI	RGATCY	3 cut(s)	250, 742, 935
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	792, 1010
Sau3AI	GATC	4 cut(s)	241, 250, 742, 935
Sau96I	GGNCC	2 cut(s)	714, 847
SchI	GAGTC	1 cut(s)	807
ScrFI	CCNGG	2 cut(s)	366, 1014
SduI	GDGCHC	2 cut(s)	117, 630
SfaNI	GCATC	2 cut(s)	557, 868
SinI	GGWCC	1 cut(s)	847
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	4 cut(s)	92, 429, 454, 981
SseBI	AGGCCT	1 cut(s)	174
SsiI	CCGC	2 cut(s)	1009, 1050
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	364, 1012
StyI	CCWWGG	2 cut(s)	161, 189
TaaI	ACNGT	3 cut(s)	438, 690, 723
TaqI	TCGA	1 cut(s)	314
TasI	AATT	4 cut(s)	92, 429, 454, 981
TauI	GCSGC	1 cut(s)	1012
TfiI	GAWTC	1 cut(s)	578
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	396, 588
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	1 cut(s)	791
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	8 cut(s)	29, 68, 85, 414, 570, 678, 749, 797
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	396, 588
VpaK11BI	GGWCC	1 cut(s)	847
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.