Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007996

Physical Location & Seq

Genomic Coordinates Reverse (-)

11984821 .. 11987065

Gene Structure 2245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAAGAATAAAACGGACACGGAGACGATTGATTCTAATCCGATTATTGATTTGAAGTCTATTATCCATCAGCATTCCCAGTTCATGGACAAGCTAGTGGAGCTCATCCCTGCTAGGTTCTATTTACCCAATGACGACGACGAGAAGCCATGGTTTCAAGGCCTCAGCAACCCTGCAAAAGCTTCAGCTAAGAAGGAAACAAAGAAAAACATCAAGAAAGCTCGCAGAGATCGATTGGATCCAGAGAAGACTTCTACAACAACCCTTGATTTGCTAAAGCAAAGTTTGGGAAAGGAGAAGTCGAATGAGGATGAGAGTGACAGTGGTGAAATGGAGACTAAACCTGTGGTGCCTGGTCTGGAAGGCGATGACAGGTCAGTGACATATGAAGAACTCCAGCAACGGCTTCGTCGTAAAATTGAACAGTTTCAGTCTGGTCGCAATTGTGGAGTTTCAGAGAGAGCAAGGAAGAGGAGTGAAAGGAAGGAGAGATATGAGAAAGGAGCTGATGGCAGGAAACGGAAGAGAGAAACTGCATCTGATGAAAAGAAACCTACTAGTAGTGATTCGGCGGACAAGAGAGTTGAAGAAGACGTTGCAGAGGCTTCTAAAGGGCTCACATTCAGTCGCGTCAAACTTGGGGGTGATGATGAGGTTGGAAAGAAGAAGAGAAGACTGTCAAAGGCGAAGGAGCTTGAGAGGGCCAAACAGTTGGAAGAAGTGAAGAAAGATCCAGAGAAAGGTAAGTCCCTCTTGTGGAAAACAGCAACCAGTAGAGCTGCTGGGGTTAAGGTTCATGATGATCCAAAGTTGCTGAAACAAAGCATAAAAAAGGAGAACAAGAAGCATCAGAAGAACGCTGAGAAATGGAAGGAAAGGGTTGAAACCACACACAAGTTGAAAGCAGACAAACAGAAGAAGAGATCTGATAATATTTCAGCAAAACTTGATGAGAAGAAAAAGCGCAAAATTGCAAAGAGAGAGAAGAAACTCATGCGGCCAGGATTTGAAGGTCGCAAAGAAGGTTATGTCAATGAGGGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP14 SURF6

Protein Analysis

348

Amino Acids

40.02

Weight (kDa)

9.77

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP14	PF15459	22 - 82	1.3e-20	60S ribosome biogenesis protein Rrp14
SURF6	PF04935	153 - 323	1.3e-19	Surfeit locus protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05210 AT5G05210
fragaria_vesca	FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_4g05060 FvH4_4g05060
malus_domestica	MD13G1224300.v1.1 MD16G1229100.v1.1
prunus_persica	Prupe.1G051000_v2.0.a1
pyrus_communis	pycom13g19810
rosa_chinensis	RchiOBHm_Chr4g0395981
rosa_laevigata	RLG00000009583
rosa_multiflora	Rmu_sc0001103.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340770
rosa_rugosa	Rorug03G0353000
rosa_samantha	Rh4AG064400 Rh4AG066200 Rh4BG063100 Rh4CG069500 Rh4DG059600
rosa_wichuraiana	Rw4G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccII	CGCG	1 cut(s)	630
AciI	CCGC	2 cut(s)	572, 997
AclWI	GGATC	4 cut(s)	233, 246, 725, 797
AcoI	YGGCCR	1 cut(s)	998
AcuI	CTGAAG	1 cut(s)	168
AfiI	CCNNNNNNNGG	3 cut(s)	85, 740, 756
AgsI	TTSAA	7 cut(s)	55, 158, 422, 587, 884, 901, 1010
AhlI	ACTAGT	1 cut(s)	557
AjnI	CCWGG	2 cut(s)	352, 1000
AluBI	AGCT	8 cut(s)	94, 103, 182, 188, 221, 506, 694, 779
AluI	AGCT	8 cut(s)	94, 103, 182, 188, 221, 506, 694, 779
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	17, 329
AlwI	GGATC	4 cut(s)	233, 246, 725, 797
AoxI	GGCC	3 cut(s)	160, 702, 998
ApeKI	GCWGC	1 cut(s)	779
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	966
AspS9I	GGNCC	1 cut(s)	702
AsuHPI	GGTGA	2 cut(s)	338, 656
BamHI	GGATCC	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	2 cut(s)	105, 618
BbsI	GAAGAC	3 cut(s)	254, 597, 679
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	2 cut(s)	75, 503
BceAI	ACGGC	1 cut(s)	419
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	2 cut(s)	354, 1002
BcoDI	GTCTC	2 cut(s)	17, 329
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	3 cut(s)	95, 114, 558
BglII	AGATCT	1 cut(s)	923
BisI	GCNGC	2 cut(s)	780, 998
BlsI	GCNGC	2 cut(s)	781, 999
Bme1390I	CCNGG	2 cut(s)	354, 1002
BmgT120I	GGNCC	1 cut(s)	702
BmiI	GGNNCC	2 cut(s)	240, 351
BmrFI	CCNGG	2 cut(s)	354, 1002
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	2 cut(s)	545, 856
BmuI	ACTGGG	1 cut(s)	73
BpiI	GAAGAC	3 cut(s)	254, 597, 679
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	716
Bsa29I	ATCGAT	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 740, 756
Bse1I	ACTGG	2 cut(s)	79, 771
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	2 cut(s)	354, 1002
BseCI	ATCGAT	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	105, 316
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	85, 740, 756
BseMII	CTCAG	2 cut(s)	178, 852
BseNI	ACTGG	2 cut(s)	79, 771
BseRI	GAGGAG	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	766
BseYI	CCCAGC	1 cut(s)	782
Bsh1236I	CGCG	1 cut(s)	630
BshFI	GGCC	3 cut(s)	162, 704, 1000
BshNI	GGYRCC	1 cut(s)	349
BshVI	ATCGAT	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	3 cut(s)	85, 740, 756
BsmAI	GTCTC	2 cut(s)	17, 329
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	733
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	3 cut(s)	162, 704, 1000
Bsp1286I	GDGCHC	2 cut(s)	105, 618
Bsp143I	GATC	5 cut(s)	229, 238, 730, 802, 923
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	2 cut(s)	572, 997
BspANI	GGCC	3 cut(s)	162, 704, 1000
BspCNI	CTCAG	2 cut(s)	177, 853
BspDI	ATCGAT	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	630
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	2 cut(s)	240, 351
BspPI	GGATC	4 cut(s)	233, 246, 725, 797
BspT107I	GGYRCC	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	79, 771
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	5 cut(s)	229, 238, 730, 802, 923
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	354, 1002
Bst4CI	ACNGT	4 cut(s)	323, 426, 678, 711
Bst6I	CTCTTC	4 cut(s)	464, 518, 662, 914
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	3 cut(s)	164, 189, 861
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	105, 316
BstFNI	CGCG	1 cut(s)	630
BstHHI	GCGC	1 cut(s)	966
BstKTI	GATC	5 cut(s)	232, 241, 733, 805, 926
BstMAI	GTCTC	2 cut(s)	17, 329
BstMBI	GATC	5 cut(s)	229, 238, 730, 802, 923
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	354, 1002
BstSCI	CCNGG	2 cut(s)	352, 1000
BstUI	CGCG	1 cut(s)	630
BstV1I	GCAGC	1 cut(s)	766
BstV2I	GAAGAC	3 cut(s)	254, 597, 679
BstX2I	RGATCY	3 cut(s)	238, 730, 923
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	3 cut(s)	238, 730, 923
Bsu15I	ATCGAT	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	162, 704, 1000
BsuTUI	ATCGAT	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	105, 316
BtsIMutI	CAGTG	2 cut(s)	328, 384
Cac8I	GCNNGC	1 cut(s)	223
CciI	TCATGA	1 cut(s)	796
CfoI	GCGC	1 cut(s)	966
Cfr13I	GGNCC	1 cut(s)	702
ClaI	ATCGAT	1 cut(s)	232
CseI	GACGC	1 cut(s)	619
CviAII	CATG	4 cut(s)	85, 150, 797, 994
DdeI	CTNAG	3 cut(s)	164, 189, 861
DpnI	GATC	5 cut(s)	231, 240, 732, 804, 925
DpnII	GATC	5 cut(s)	229, 238, 730, 802, 923
EaeI	YGGCCR	1 cut(s)	998
Eam1104I	CTCTTC	4 cut(s)	464, 518, 662, 914
EarI	CTCTTC	4 cut(s)	464, 518, 662, 914
EciI	GGCGGA	1 cut(s)	587
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	149
Eco147I	AGGCCT	1 cut(s)	162
Eco24I	GRGCYC	2 cut(s)	105, 618
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	103
EcoRII	CCWGG	2 cut(s)	352, 1000
EcoT14I	CCWWGG	1 cut(s)	149
EcoT38I	GRGCYC	2 cut(s)	105, 618
ErhI	CCWWGG	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	4 cut(s)	88, 153, 800, 997
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	4 cut(s)	84, 149, 796, 993
FauNDI	CATATG	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	780, 998
FokI	GGATG	2 cut(s)	92, 323
FriOI	GRGCYC	2 cut(s)	105, 618
Fsp4HI	GCNGC	2 cut(s)	780, 998
FspBI	CTAG	3 cut(s)	95, 114, 558
GlaI	GCGC	1 cut(s)	965
GluI	GCNGC	2 cut(s)	780, 998
GsaI	CCCAGC	1 cut(s)	786
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	3 cut(s)	162, 704, 1000
HgaI	GACGC	1 cut(s)	619
HhaI	GCGC	1 cut(s)	966
Hin1II	CATG	4 cut(s)	88, 153, 800, 997
Hin6I	GCGC	1 cut(s)	964
HinP1I	GCGC	1 cut(s)	964
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	2 cut(s)	32, 566
HphI	GGTGA	2 cut(s)	338, 656
Hpy188I	TCNGA	5 cut(s)	42, 457, 541, 852, 928
Hpy188III	TCNNGA	5 cut(s)	214, 242, 359, 734, 797
Hpy99I	CGWCG	3 cut(s)	140, 143, 414
HpyAV	CCTTC	7 cut(s)	187, 356, 478, 682, 865, 1004, 1016
HpyCH4III	ACNGT	4 cut(s)	323, 426, 678, 711
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	5 cut(s)	176, 536, 599, 974, 1043
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	3 cut(s)	164, 189, 861
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	4 cut(s)	88, 153, 800, 997
HspAI	GCGC	1 cut(s)	964
Kzo9I	GATC	5 cut(s)	229, 238, 730, 802, 923
LmnI	GCTCC	3 cut(s)	100, 503, 691
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	2 cut(s)	545, 856
MaeI	CTAG	3 cut(s)	95, 114, 558
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	2 cut(s)	317, 379
MalI	GATC	5 cut(s)	231, 240, 732, 804, 925
MboI	GATC	5 cut(s)	229, 238, 730, 802, 923
MfeI	CAATTG	1 cut(s)	442
MflI	RGATCY	3 cut(s)	238, 730, 923
MhlI	GDGCHC	2 cut(s)	105, 618
MluCI	AATT	3 cut(s)	417, 442, 969
MmeI	TCCRAC	2 cut(s)	637, 693
MnlI	CCTC	8 cut(s)	173, 301, 465, 595, 646, 693, 761, 1030
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	1 cut(s)	789
MspR9I	CCNGG	2 cut(s)	354, 1002
MunI	CAATTG	1 cut(s)	442
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	2 cut(s)	354, 1002
MvnI	CGCG	1 cut(s)	630
MwoI	GCNNNNNNNGC	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	149
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	5 cut(s)	229, 238, 730, 802, 923
NlaIII	CATG	4 cut(s)	88, 153, 800, 997
NlaIV	GGNNCC	2 cut(s)	240, 351
NmuCI	GTSAC	2 cut(s)	317, 379
PagI	TCATGA	1 cut(s)	796
PceI	AGGCCT	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	2 cut(s)	229, 409
PctI	GAATGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	32, 566
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	781, 999
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	352, 1000
PspFI	CCCAGC	1 cut(s)	782
PspGI	CCWGG	2 cut(s)	352, 1000
PspN4I	GGNNCC	2 cut(s)	240, 351
PspPI	GGNCC	1 cut(s)	702
PsuI	RGATCY	3 cut(s)	238, 730, 923
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	789
SatI	GCNGC	2 cut(s)	780, 998
Sau3AI	GATC	5 cut(s)	229, 238, 730, 802, 923
Sau96I	GGNCC	1 cut(s)	702
ScrFI	CCNGG	2 cut(s)	354, 1002
SduI	GDGCHC	2 cut(s)	105, 618
SfaNI	GCATC	2 cut(s)	545, 856
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SpeI	ACTAGT	1 cut(s)	557
Sse9I	AATT	3 cut(s)	417, 442, 969
SseBI	AGGCCT	1 cut(s)	162
SsiI	CCGC	2 cut(s)	572, 997
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	3 cut(s)	95, 114, 558
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	352, 1000
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	4 cut(s)	323, 426, 678, 711
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	2 cut(s)	232, 302
TasI	AATT	3 cut(s)	417, 442, 969
TauI	GCSGC	1 cut(s)	1000
TfiI	GAWTC	2 cut(s)	32, 566
Tru1I	TTAA	1 cut(s)	789
Tru9I	TTAA	1 cut(s)	789
TscAI	CASTG	2 cut(s)	328, 384
TseFI	GTSAC	2 cut(s)	317, 379
TseI	GCWGC	1 cut(s)	779
Tsp45I	GTSAC	2 cut(s)	317, 379
TspDTI	ATGAA	5 cut(s)	17, 73, 402, 558, 785
TspGWI	ACGGA	3 cut(s)	29, 35, 535
TspRI	CASTG	2 cut(s)	328, 384
Van91I	CCANNNNNTGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	3 cut(s)	95, 114, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.