Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007996

Physical Location & Seq

Genomic Coordinates Reverse (-)

23393730 .. 23395799

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1229100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGAAAAATGATCGTAGCCCACCAAAAGCCCATTCCTCTAGGGTTCTTGTATTCTTGGAACCGCTGCAATCTGTAGCAGAAAAACAAGCTTCAGCTTCTGATTTCTGTATCGACGCCGCGGCATTCACCACGATGAAGAAAAAAAGAGCAAGTCATACCAGTGATTCCAATCCAATTCTCGATTTGAAGTCTATTATCCATCAGCATTCTCAATTCTTCGACAAGTTAGTTGAGCTCATCCCTGCTAGATTCTATCTACCCGTTGACGATGATGATAAGCCATGGTTTCAAGGTCTCAGCAAGACTGCAAAAGCTTCAGCAAAGAAGGAATCAAAGGAAAACATTAAGAAAGCTCGAAGAGAACGGTTGGATCCAGAGAAGTCTTCTAAGACTACCCTTGATGTGCTAAAGCAAAGTTTGGAAAAGAAGTCAAACGATGAGAGTGATAGTGATGAAATAGAGATTAAGCCTGTGGTGCCTGGTCTGGAAGATGATGAACGATCAGTGGAAGATGATGAACGTTCAGTGACATATGAAGAACTCCAGCAACGGCTTCGTCGCAAACTTGATGAGTTTCGGGCTGGTCGGCATTCTGAAGGTTCAGAGAGAGCAAGGAAGAGGATTGAGCGAAAGGAAAGATATGAGAAGAAAGGAACTGACCAGAAGAAACGGAAGAGAGAGGCCGTATCTGATGGTAAGAAATCTGCTAGTGATGATTCAGTGGCTAAAGTGGAGAAAGATGTTGCAGAGGCTGCAAAGGAGCTGACATTCGGTTATGTCAAACTTGGGGACGAAGATGAGGTTGGTAAGACAAATAAGAAGAAAAAGTTGTCAAAGTTGCAGGAGCTTGAGAGGGCAAAACAGTTGCAAGAAGCCAAGAAAGATCCAGAAAAAGGTGAGATAATCTCGAAGAAGCATTCTTGGAAAGCTGCAACAAGTAGAGCTGCTGGGATCAAGGTTCACGATGATCCAAAGTTGTTGAAACAAAGCATTCAGAAGGAGAAGAAGCGGCATCAGAAGAATGCCGAGAAGTGGAAGGGAAGGGTTGAAACCACAGAGAAGATGAAAGCAGATAAACAGAAGAAGAGATCAGATAATATATCACAGAAAAAGCAAGAGAAGATAAACCGGAAAATCGCAAAAAGAGAGAAAAAGCTCATGCGGCCAGGGTTTGAAGGTCGCAAGGAAGGTTTCATCACCGAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRP14 SURF6

Protein Analysis

403

Amino Acids

46.23

Weight (kDa)

9.67

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRP14	PF15459	66 - 126	1.1e-23	60S ribosome biogenesis protein Rrp14
SURF6	PF04935	202 - 378	1.8e-22	Surfeit locus protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05210 AT5G05210
fragaria_vesca	FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_2g18960 FvH4_4g05060 FvH4_4g05060
malus_domestica	MD13G1224300.v1.1 MD16G1229100.v1.1
prunus_persica	Prupe.1G051000_v2.0.a1
pyrus_communis	pycom13g19810
rosa_chinensis	RchiOBHm_Chr4g0395981
rosa_laevigata	RLG00000009583
rosa_multiflora	Rmu_sc0001103.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340770
rosa_rugosa	Rorug03G0353000
rosa_samantha	Rh4AG064400 Rh4AG066200 Rh4BG063100 Rh4CG069500 Rh4DG059600
rosa_wichuraiana	Rw4G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	475
AccII	CGCG	1 cut(s)	119
AciI	CCGC	5 cut(s)	62, 117, 119, 1009, 1162
AclI	AACGTT	1 cut(s)	520
AclWI	GGATC	5 cut(s)	365, 378, 878, 959, 962
AcoI	YGGCCR	1 cut(s)	1163
AcuI	CTGAAG	3 cut(s)	75, 300, 615
AcyI	GRCGYC	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	893, 1032
AgsI	TTSAA	5 cut(s)	187, 290, 982, 1049, 1175
AjnI	CCWGG	2 cut(s)	478, 1165
AjuI	GAANNNNNNNTTGG	4 cut(s)	16, 48, 786, 818
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	5 cut(s)	365, 378, 878, 959, 962
AlwNI	CAGNNNCTG	2 cut(s)	98, 752
AoxI	GGCC	2 cut(s)	681, 1163
ApeKI	GCWGC	4 cut(s)	64, 752, 929, 944
AsuHPI	GGTGA	3 cut(s)	118, 908, 1189
BamHI	GGATCC	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	51, 739, 916, 931
BccI	CCATC	2 cut(s)	207, 686
BceAI	ACGGC	2 cut(s)	566, 668
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	2 cut(s)	480, 1167
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	3 cut(s)	39, 246, 708
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	8 cut(s)	65, 117, 120, 753, 930, 945, 1010, 1163
BlsI	GCNGC	8 cut(s)	66, 118, 121, 754, 931, 946, 1011, 1164
Bme1390I	CCNGG	2 cut(s)	480, 1167
BmiI	GGNNCC	3 cut(s)	60, 372, 477
BmrFI	CCNGG	2 cut(s)	480, 1167
BmsI	GCATC	1 cut(s)	1021
BpiI	GAAGAC	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
BpmI	CTGGAG	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	869
BsaBI	GATNNNNATC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	117, 281, 1166
BsaWI	WCCGGW	1 cut(s)	1128
Bsc4I	CCNNNNNNNGG	2 cut(s)	893, 1032
Bse1I	ACTGG	1 cut(s)	159
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	480, 1167
BseDI	CCNNGG	3 cut(s)	117, 281, 1166
BseGI	GGATG	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	893, 1032
BseMII	CTCAG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	159
BseXI	GCAGC	4 cut(s)	51, 739, 916, 931
BseYI	CCCAGC	1 cut(s)	947
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	683, 1165
BshNI	GGYRCC	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	1129
BslFI	GGGAC	1 cut(s)	803
BslI	CCNNNNNNNGG	2 cut(s)	893, 1032
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	803
BsmI	GAATGC	6 cut(s)	122, 205, 589, 916, 990, 1027
BsnI	GGCC	2 cut(s)	683, 1165
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	7 cut(s)	10, 370, 500, 883, 951, 967, 1088
Bsp19I	CCATGG	1 cut(s)	281
BspACI	CCGC	5 cut(s)	62, 117, 119, 1009, 1162
BspANI	GGCC	2 cut(s)	683, 1165
BspCNI	CTCAG	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	3 cut(s)	60, 372, 477
BspPI	GGATC	5 cut(s)	365, 378, 878, 959, 962
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	3 cut(s)	117, 281, 1166
BssMI	GATC	7 cut(s)	10, 370, 500, 883, 951, 967, 1088
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	281
Bst2UI	CCWGG	2 cut(s)	480, 1167
Bst4CI	ACNGT	2 cut(s)	366, 864
Bst6I	CTCTTC	4 cut(s)	352, 611, 668, 1079
BstACI	GRCGYC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstDEI	CTNAG	2 cut(s)	296, 387
BstDSI	CCRYGG	2 cut(s)	117, 281
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	7 cut(s)	13, 373, 503, 886, 954, 970, 1091
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	7 cut(s)	10, 370, 500, 883, 951, 967, 1088
BstMWI	GCNNNNNNNGC	3 cut(s)	475, 752, 1162
BstNI	CCWGG	2 cut(s)	480, 1167
BstSCI	CCNGG	2 cut(s)	478, 1165
BstSFI	CTRYAG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	4 cut(s)	51, 739, 916, 931
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	2 cut(s)	370, 883
BstYI	RGATCY	2 cut(s)	370, 883
BsuRI	GGCC	2 cut(s)	683, 1165
BtgI	CCRYGG	2 cut(s)	117, 281
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	4 cut(s)	166, 510, 531, 726
CaiI	CAGNNNCTG	2 cut(s)	98, 752
Cfr42I	CCGCGG	1 cut(s)	120
CseI	GACGC	1 cut(s)	122
CviAII	CATG	2 cut(s)	282, 1159
DdeI	CTNAG	2 cut(s)	296, 387
DpnI	GATC	7 cut(s)	12, 372, 502, 885, 953, 969, 1090
DpnII	GATC	7 cut(s)	10, 370, 500, 883, 951, 967, 1088
EaeI	YGGCCR	1 cut(s)	1163
Eam1104I	CTCTTC	4 cut(s)	352, 611, 668, 1079
EarI	CTCTTC	4 cut(s)	352, 611, 668, 1079
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	3 cut(s)	75, 300, 615
EcoICRI	GAGCTC	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	478, 1165
EcoT14I	CCWWGG	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	2 cut(s)	285, 1162
FaiI	YATR	8 cut(s)	156, 283, 532, 534, 642, 777, 1100, 1160
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	2 cut(s)	281, 1158
FauNDI	CATATG	1 cut(s)	532
Fnu4HI	GCNGC	8 cut(s)	65, 117, 120, 753, 930, 945, 1010, 1163
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	8 cut(s)	65, 117, 120, 753, 930, 945, 1010, 1163
FspBI	CTAG	3 cut(s)	39, 246, 708
GluI	GCNGC	8 cut(s)	65, 117, 120, 753, 930, 945, 1010, 1163
GsaI	CCCAGC	1 cut(s)	951
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	683, 1165
HapII	CCGG	1 cut(s)	1129
HgaI	GACGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	285, 1162
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	2 cut(s)	87, 312
HinfI	GANTC	4 cut(s)	164, 249, 329, 716
HpaII	CCGG	1 cut(s)	1129
HphI	GGTGA	3 cut(s)	118, 908, 1189
Hpy166II	GTNNAC	2 cut(s)	265, 961
Hpy188I	TCNGA	7 cut(s)	100, 595, 604, 691, 996, 1017, 1093
Hpy188III	TCNNGA	6 cut(s)	179, 374, 485, 887, 907, 962
Hpy8I	GTNNAC	2 cut(s)	265, 961
Hpy99I	CGWCG	2 cut(s)	116, 561
HpyAV	CCTTC	8 cut(s)	319, 590, 991, 1030, 1035, 1169, 1181, 1196
HpyCH4III	ACNGT	2 cut(s)	366, 864
HpyCH4IV	ACGT	1 cut(s)	520
HpyCH4V	TGCA	7 cut(s)	67, 308, 746, 755, 841, 868, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	475, 752, 1162
HpyF3I	CTNAG	2 cut(s)	296, 387
HpySE526I	ACGT	1 cut(s)	520
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	285, 1162
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	7 cut(s)	10, 370, 500, 883, 951, 967, 1088
LmnI	GCTCC	2 cut(s)	760, 844
Lsp1109I	GCAGC	4 cut(s)	51, 739, 916, 931
LweI	GCATC	1 cut(s)	1021
MaeI	CTAG	3 cut(s)	39, 246, 708
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	7 cut(s)	12, 372, 502, 885, 953, 969, 1090
MboI	GATC	7 cut(s)	10, 370, 500, 883, 951, 967, 1088
MflI	RGATCY	2 cut(s)	370, 883
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	174, 212
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	6 cut(s)	46, 612, 673, 742, 793, 846
MseI	TTAA	3 cut(s)	345, 465, 1207
MslI	CAYNNNNRTG	2 cut(s)	131, 159
MspA1I	CMGCKG	2 cut(s)	64, 119
MspI	CCGG	1 cut(s)	1129
MspR9I	CCNGG	2 cut(s)	480, 1167
Mva1269I	GAATGC	6 cut(s)	122, 205, 589, 916, 990, 1027
MvaI	CCWGG	2 cut(s)	480, 1167
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	475, 752, 1162
NcoI	CCATGG	1 cut(s)	281
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	7 cut(s)	10, 370, 500, 883, 951, 967, 1088
NlaIII	CATG	2 cut(s)	285, 1162
NlaIV	GGNNCC	3 cut(s)	60, 372, 477
NmeAIII	GCCGAG	1 cut(s)	1051
NmuCI	GTSAC	1 cut(s)	526
PctI	GAATGC	6 cut(s)	122, 205, 589, 916, 990, 1027
PfeI	GAWTC	4 cut(s)	164, 249, 329, 716
PkrI	GCNGC	8 cut(s)	66, 118, 121, 754, 931, 946, 1011, 1164
Psp124BI	GAGCTC	1 cut(s)	237
Psp1406I	AACGTT	1 cut(s)	520
Psp6I	CCWGG	2 cut(s)	478, 1165
PspFI	CCCAGC	1 cut(s)	947
PspGI	CCWGG	2 cut(s)	478, 1165
PspN4I	GGNNCC	3 cut(s)	60, 372, 477
PstNI	CAGNNNCTG	2 cut(s)	98, 752
PsuI	RGATCY	2 cut(s)	370, 883
RseI	CAYNNNNRTG	2 cut(s)	131, 159
SacI	GAGCTC	1 cut(s)	237
SacII	CCGCGG	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	345, 465, 1207
SatI	GCNGC	8 cut(s)	65, 117, 120, 753, 930, 945, 1010, 1163
Sau3AI	GATC	7 cut(s)	10, 370, 500, 883, 951, 967, 1088
ScrFI	CCNGG	2 cut(s)	480, 1167
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	1021
SfcI	CTRYAG	1 cut(s)	72
Sfr303I	CCGCGG	1 cut(s)	120
SgrBI	CCGCGG	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	131, 159
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
Sse9I	AATT	2 cut(s)	174, 212
SsiI	CCGC	5 cut(s)	62, 117, 119, 1009, 1162
SspMI	CTAG	3 cut(s)	39, 246, 708
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	478, 1165
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	366, 864
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	5 cut(s)	111, 180, 219, 355, 908
TasI	AATT	2 cut(s)	174, 212
TauI	GCSGC	4 cut(s)	119, 122, 1012, 1165
TfiI	GAWTC	4 cut(s)	164, 249, 329, 716
Tru1I	TTAA	3 cut(s)	345, 465, 1207
Tru9I	TTAA	3 cut(s)	345, 465, 1207
TscAI	CASTG	4 cut(s)	166, 510, 531, 726
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	4 cut(s)	64, 752, 929, 944
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	8 cut(s)	17, 149, 468, 510, 531, 549, 1079, 1183
TspGWI	ACGGA	1 cut(s)	685
TspRI	CASTG	4 cut(s)	166, 510, 531, 726
XspI	CTAG	3 cut(s)	39, 246, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.