Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009473

Physical Location & Seq

Genomic Coordinates Reverse (-)

1576982 .. 1578768

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCCTGAGCTCTCGTGCACACAACATAGTAAAGAGCGAAAAAGGTTAAAACTTTTGTTCACTGTCAGAAATAGAAAAAATCGTCGATGCGCATTAATGGCAATTCGGCCGAGAACTCGTAAAAGAGTTCAAGCTGTTCGTCGTGCTGCCGATGGTAGCGCTTTTAAAAAATGTGAAGAATGTGGTGTTATGATAGCGATTGCTCTGTATGATATGCATGAGTGCGGTGAGAAAAGAAGGGAAGTGAAAAGGTTCAAGTACATTGCGAGTGGCAATATCGATAATATCTCGAAACCAATTGGGAGCTTTGAAGATGAACCCAGATCACCATTTGTCTTCTTCTTAGAGGAGTTTAGGGAAAATTACAATGGAGACTTAGTGGATGCTAGCAGAATATGTTTCAATGTATGGAAGAACATGTCAGCAGAGGACCAAAAACCATTCAACGCCCGTGCTATGGAGGTTGATTCGGCACACAGTAGAAAGTTAAACGAAGAAGCTAAAACCATTTATAAGGCAGATGAAGAGGCAGATTCAAAAACTGTTGGGAGATATGACAAGTTCTATGAGAGCTACGTTCAAATTGAAGAAGAGGAAGACTATGATTCATCTGATCATTTCGGACACGAGTTTTGGGAAGACGATACTATGTTGGACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box_2

Protein Analysis

220

Amino Acids

25.93

Weight (kDa)

6.04

Isoelectric Point (pI)

66.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05330 AT5G05330 AT5G05330
fragaria_vesca	FvH4_7g25601 FvH4_7g25601 FvH4_7g25601 FvH4_7g25601
malus_domestica	MD01G1163300.v1.1 MD07G1231300.v1.1
prunus_persica	Prupe.2G261300_v2.0.a1
pyrus_communis	pycom01g17790
rosa_chinensis	RchiOBHm_Chr1g0371741
rosa_laevigata	RLG00000026945
rosa_multiflora	Rmu_sc0001755.1_g000054 Rmu_sc0019360.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285480
rosa_rugosa	Rorug01G0365900
rosa_samantha	Rh1AG376000 Rh1BG339400 Rh1CG352500 Rh1DG370500
rosa_wichuraiana	Rw1G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
Acc16I	TGCGCA	1 cut(s)	91
AciI	CCGC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	107
AfaI	GTAC	1 cut(s)	260
AfeI	AGCGCT	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	457
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	8 cut(s)	131, 256, 311, 403, 445, 537, 581, 587
AluBI	AGCT	5 cut(s)	10, 134, 306, 500, 573
AluI	AGCT	5 cut(s)	10, 134, 306, 500, 573
Alw21I	GWGCWC	2 cut(s)	12, 20
Alw26I	GTCTC	1 cut(s)	366
Alw44I	GTGCAC	1 cut(s)	16
Aor51HI	AGCGCT	1 cut(s)	160
AoxI	GGCC	1 cut(s)	107
ApaLI	GTGCAC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
AseI	ATTAAT	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	2 cut(s)	92, 161
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	239, 318
AsuNHI	GCTAGC	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	430
BaeGI	GKGCMC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	12
BauI	CACGAG	2 cut(s)	13, 626
BbsI	GAAGAC	3 cut(s)	328, 603, 645
Bbv12I	GWGCWC	2 cut(s)	12, 20
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	146
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	162
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
BmsI	GCATC	2 cut(s)	77, 373
BmtI	GCTAGC	1 cut(s)	390
BpiI	GAAGAC	3 cut(s)	328, 603, 645
Bpu10I	CCTNAGC	1 cut(s)	6
Bsa29I	ATCGAT	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	261
BseCI	ATCGAT	1 cut(s)	279
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	20
BseX3I	CGGCCG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	109
BshVI	ATCGAT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	12, 20
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	12, 20
Bsp143I	GATC	2 cut(s)	323, 613
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	109
BspDI	ATCGAT	1 cut(s)	279
BspOI	GCTAGC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	261
BssMI	GATC	2 cut(s)	323, 613
BssSI	CACGAG	2 cut(s)	13, 626
Bst2BI	CACGAG	2 cut(s)	13, 626
Bst4CI	ACNGT	3 cut(s)	64, 479, 544
Bst6I	CTCTTC	2 cut(s)	519, 585
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	6, 343, 376
BstF5I	GGATG	1 cut(s)	388
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	92, 161
BstKTI	GATC	2 cut(s)	326, 616
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	2 cut(s)	323, 613
BstMCI	CGRYCG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	421
BstSLI	GKGCMC	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	3 cut(s)	328, 603, 645
BstZI	CGGCCG	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	109
BsuTUI	ATCGAT	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	388
CfoI	GCGC	2 cut(s)	92, 161
Cfr13I	GGNCC	1 cut(s)	430
ClaI	ATCGAT	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	2 cut(s)	218, 418
CviJI	RGCY	6 cut(s)	10, 109, 134, 306, 500, 573
CviKI_1	RGCY	6 cut(s)	10, 109, 134, 306, 500, 573
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	3 cut(s)	6, 343, 376
DpnI	GATC	2 cut(s)	325, 615
DpnII	GATC	2 cut(s)	323, 613
DraI	TTTAAA	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	107
EagI	CGGCCG	1 cut(s)	107
Eam1104I	CTCTTC	2 cut(s)	519, 585
EarI	CTCTTC	2 cut(s)	519, 585
Ecl136II	GAGCTC	1 cut(s)	10
EclXI	CGGCCG	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	430
Eco47III	AGCGCT	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	2 cut(s)	221, 421
FatI	CATG	2 cut(s)	217, 417
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	147
FspAI	RTGCGCAY	1 cut(s)	91
FspBI	CTAG	1 cut(s)	387
FspI	TGCGCA	1 cut(s)	91
GlaI	GCGC	2 cut(s)	91, 160
GluI	GCNGC	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	109
HhaI	GCGC	2 cut(s)	92, 161
Hin1II	CATG	2 cut(s)	221, 421
Hin6I	GCGC	2 cut(s)	90, 159
HinP1I	GCGC	2 cut(s)	90, 159
HinfI	GANTC	3 cut(s)	467, 533, 605
HphI	GGTGA	2 cut(s)	239, 318
Hpy166II	GTNNAC	2 cut(s)	18, 60
Hpy188I	TCNGA	3 cut(s)	68, 613, 623
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	2 cut(s)	18, 60
Hpy99I	CGWCG	2 cut(s)	87, 144
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	3 cut(s)	64, 479, 544
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	2 cut(s)	18, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	3 cut(s)	6, 343, 376
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	2 cut(s)	221, 421
HspAI	GCGC	2 cut(s)	90, 159
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	323, 613
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	2 cut(s)	18, 334
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	2 cut(s)	77, 373
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	576
MalI	GATC	2 cut(s)	325, 615
MboI	GATC	2 cut(s)	323, 613
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	12, 20
MluCI	AATT	4 cut(s)	102, 297, 361, 582
MmeI	TCCRAC	1 cut(s)	633
MnlI	CCTC	5 cut(s)	340, 421, 454, 520, 586
Mph1103I	ATGCAT	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	4 cut(s)	47, 95, 165, 488
MunI	CAATTG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	2 cut(s)	323, 613
NheI	GCTAGC	1 cut(s)	386
NlaIII	CATG	2 cut(s)	221, 421
NmeAIII	GCCGAG	1 cut(s)	135
NsbI	TGCGCA	1 cut(s)	91
NsiI	ATGCAT	1 cut(s)	219
NspI	RCATGY	1 cut(s)	421
PciI	ACATGT	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	467, 533, 605
PkrI	GCNGC	1 cut(s)	148
PscI	ACATGT	1 cut(s)	417
PshBI	ATTAAT	1 cut(s)	95
PsiI	TTATAA	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	430
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	47, 95, 165, 488
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	323, 613
Sau96I	GGNCC	1 cut(s)	430
SduI	GDGCHC	2 cut(s)	12, 20
SetI	ASST	9 cut(s)	12, 47, 136, 254, 308, 465, 502, 575, 579
SfaNI	GCATC	2 cut(s)	77, 373
SinI	GGWCC	1 cut(s)	430
Sse9I	AATT	4 cut(s)	102, 297, 361, 582
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	387
SstI	GAGCTC	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	64, 479, 544
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	3 cut(s)	85, 279, 290
TasI	AATT	4 cut(s)	102, 297, 361, 582
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	3 cut(s)	467, 533, 605
Tru1I	TTAA	4 cut(s)	47, 95, 165, 488
Tru9I	TTAA	4 cut(s)	47, 95, 165, 488
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	3 cut(s)	330, 537, 597
TspRI	CASTG	1 cut(s)	67
VneI	GTGCAC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	430
VspI	ATTAAT	1 cut(s)	95
XceI	RCATGY	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	1 cut(s)	387
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.