Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009473

Physical Location & Seq

Genomic Coordinates Forward (+)

17004975 .. 17007135

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTGCGCACTTAACAACCGGCAGTTGAAGAGCGGTCCTTCAATGGTGAATCCGAGGACCCGGAAGAGGGTTCGTCCAATCCCTCGAGCTCCCGACGGAAGTGCCTTTCAAAAGTGCAATTCCTGTGGAGCTTCAGTGCCCATAGCTTTGGCTGGGATGCACGACTGTGAATTCAACGAGAAGGTGAAGAGGTTTAAAGGCGTAGGCGTGGATGTTAAGAAACAGAGCATTTGGGACCAGCTCGTAGTCATTGCCCCTTTTCATTTCTTCATGAAAGAATATACCAAGACGAGCAACGCTGGAAATTGGGTTGACATTAATAGAGAAGGGTTTGAGGCATGGAAGAACATGTCCGAGAAGGAGAGGCAACCGTATGTTGCAGAAGCTGAAAAGATCGACAAGGCTTACCAGAAAGCTTTGCTTGAAGAAGAAAATGATAAACTCGAGGTGGATGATGAGGCAGATTCAGCCGCGGCCGCGGGGAACAATGGGAAGGCTGGTGAGTTTTATGAAGACTACGAGAATTCTGACGGCTCTGATGTATTTTGGGATCACTCTGCTACAACCGGGTCTTGGCACACCTACCATGGGCCTATAGTGCATGAGTGCACCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box_2

Protein Analysis

206

Amino Acids

23.01

Weight (kDa)

5.57

Isoelectric Point (pI)

29.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05330 AT5G05330 AT5G05330
fragaria_vesca	FvH4_7g25601 FvH4_7g25601 FvH4_7g25601 FvH4_7g25601
malus_domestica	MD01G1163300.v1.1 MD07G1231300.v1.1
prunus_persica	Prupe.2G261300_v2.0.a1
pyrus_communis	pycom01g17790
rosa_chinensis	RchiOBHm_Chr1g0371741
rosa_laevigata	RLG00000026945
rosa_multiflora	Rmu_sc0001755.1_g000054 Rmu_sc0019360.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285480
rosa_rugosa	Rorug01G0365900
rosa_samantha	Rh1AG376000 Rh1BG339400 Rh1CG352500 Rh1DG370500
rosa_wichuraiana	Rw1G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	7
AccBSI	CCGCTC	1 cut(s)	33
AccII	CGCG	2 cut(s)	473, 479
AciI	CCGC	5 cut(s)	33, 471, 473, 477, 479
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	2 cut(s)	170, 523
AcuI	CTGAAG	1 cut(s)	117
AfiI	CCNNNNNNNGG	4 cut(s)	66, 67, 573, 588
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	5 cut(s)	28, 42, 110, 175, 425
AleI	CACNNNNGTG	1 cut(s)	165
AluBI	AGCT	6 cut(s)	89, 131, 146, 241, 386, 416
AluI	AGCT	6 cut(s)	89, 131, 146, 241, 386, 416
Alw21I	GWGCWC	2 cut(s)	91, 611
Alw44I	GTGCAC	1 cut(s)	607
AlwI	GGATC	1 cut(s)	558
AlwNI	CAGNNNCTG	1 cut(s)	386
Ama87I	CYCGRG	2 cut(s)	84, 443
AoxI	GGCC	2 cut(s)	474, 590
ApaLI	GTGCAC	1 cut(s)	607
ApoI	RAATTY	2 cut(s)	170, 523
AseI	ATTAAT	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	4 cut(s)	35, 57, 235, 590
AsuC2I	CCSGG	2 cut(s)	61, 568
AsuHPI	GGTGA	3 cut(s)	58, 196, 512
AvaI	CYCGRG	2 cut(s)	84, 443
AvaII	GGWCC	3 cut(s)	35, 57, 235
BaeGI	GKGCMC	2 cut(s)	141, 611
BanII	GRGCYC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	519
Bbv12I	GWGCWC	2 cut(s)	91, 611
BceAI	ACGGC	1 cut(s)	547
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BcnI	CCSGG	2 cut(s)	61, 568
BfmI	CTRYAG	1 cut(s)	594
BisI	GCNGC	3 cut(s)	471, 474, 477
BlsI	GCNGC	3 cut(s)	472, 475, 478
Bme1390I	CCNGG	2 cut(s)	61, 568
Bme18I	GGWCC	3 cut(s)	35, 57, 235
BmeT110I	CYCGRG	2 cut(s)	84, 443
BmgT120I	GGNCC	4 cut(s)	35, 57, 235, 590
BmiI	GGNNCC	2 cut(s)	59, 236
BmrFI	CCNGG	2 cut(s)	61, 568
BmsI	GCATC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	519
BplI	GAGNNNNNCTC	1 cut(s)	596
BpuMI	CCSGG	2 cut(s)	61, 568
BsaJI	CCNNGG	4 cut(s)	53, 471, 477, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 67, 573, 588
Bse118I	RCCGGY	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	4 cut(s)	53, 471, 477, 586
BseGI	GGATG	3 cut(s)	162, 217, 457
BseLI	CCNNNNNNNGG	4 cut(s)	66, 67, 573, 588
BseMI	GCAATG	1 cut(s)	249
BseSI	GKGCMC	2 cut(s)	141, 611
BseX3I	CGGCCG	1 cut(s)	474
BseYI	CCCAGC	1 cut(s)	152
Bsh1236I	CGCG	2 cut(s)	473, 479
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	2 cut(s)	476, 592
BsiEI	CGRYCG	1 cut(s)	477
BsiHKAI	GWGCWC	2 cut(s)	91, 611
BsiHKCI	CYCGRG	2 cut(s)	84, 443
BsiSI	CCGG	3 cut(s)	19, 61, 567
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	4 cut(s)	66, 67, 573, 588
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	476, 592
BsoBI	CYCGRG	2 cut(s)	84, 443
Bsp1286I	GDGCHC	3 cut(s)	91, 141, 611
Bsp143I	GATC	2 cut(s)	393, 550
Bsp19I	CCATGG	1 cut(s)	586
BspACI	CCGC	5 cut(s)	33, 471, 473, 477, 479
BspANI	GGCC	2 cut(s)	476, 592
BspFNI	CGCG	2 cut(s)	473, 479
BspHI	TCATGA	2 cut(s)	270, 614
BspLI	GGNNCC	2 cut(s)	59, 236
BspPI	GGATC	1 cut(s)	558
BspQI	GCTCTTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	18
BssECI	CCNNGG	4 cut(s)	53, 471, 477, 586
BssMI	GATC	2 cut(s)	393, 550
BssT1I	CCWWGG	1 cut(s)	586
Bst4CI	ACNGT	2 cut(s)	167, 372
Bst6I	CTCTTC	3 cut(s)	23, 59, 182
BstDSI	CCRYGG	3 cut(s)	471, 477, 586
BstF5I	GGATG	3 cut(s)	162, 217, 457
BstFNI	CGCG	2 cut(s)	473, 479
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	2 cut(s)	396, 553
BstMBI	GATC	2 cut(s)	393, 550
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	3 cut(s)	467, 476, 598
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	2 cut(s)	59, 566
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	2 cut(s)	141, 611
BstUI	CGCG	2 cut(s)	473, 479
BstV2I	GAAGAC	1 cut(s)	519
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstZI	CGGCCG	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	476, 592
BtgI	CCRYGG	3 cut(s)	471, 477, 586
BtsCI	GGATG	3 cut(s)	162, 217, 457
BtsIMutI	CAGTG	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	386
CciI	TCATGA	2 cut(s)	270, 614
CciNI	GCGGCCGC	1 cut(s)	474
CfoI	GCGC	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	18
Cfr13I	GGNCC	4 cut(s)	35, 57, 235, 590
Cfr42I	CCGCGG	2 cut(s)	474, 480
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	6 cut(s)	271, 339, 349, 587, 602, 615
DpnI	GATC	2 cut(s)	395, 552
DpnII	GATC	2 cut(s)	393, 550
DraI	TTTAAA	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	474
EagI	CGGCCG	1 cut(s)	474
Eam1104I	CTCTTC	3 cut(s)	23, 59, 182
EarI	CTCTTC	3 cut(s)	23, 59, 182
Ecl136II	GAGCTC	1 cut(s)	89
EclXI	CGGCCG	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	3 cut(s)	35, 57, 235
Eco52I	CGGCCG	1 cut(s)	474
Eco53kI	GAGCTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	2 cut(s)	84, 443
EcoICRI	GAGCTC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRI	GAATTC	2 cut(s)	170, 523
EcoT14I	CCWWGG	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	6 cut(s)	274, 342, 352, 590, 605, 618
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	6 cut(s)	270, 338, 348, 586, 601, 614
FauI	CCCGC	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	471, 474, 477
FokI	GGATG	3 cut(s)	169, 224, 464
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	3 cut(s)	471, 474, 477
FspAI	RTGCGCAY	1 cut(s)	7
FspI	TGCGCA	1 cut(s)	7
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	3 cut(s)	471, 474, 477
GsaI	CCCAGC	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	476, 592
HapII	CCGG	3 cut(s)	19, 61, 567
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	6 cut(s)	274, 342, 352, 590, 605, 618
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	2 cut(s)	49, 464
HpaII	CCGG	3 cut(s)	19, 61, 567
HphI	GGTGA	3 cut(s)	58, 196, 512
Hpy166II	GTNNAC	2 cut(s)	313, 609
Hpy188I	TCNGA	4 cut(s)	54, 355, 529, 538
Hpy188III	TCNNGA	3 cut(s)	92, 271, 615
Hpy8I	GTNNAC	2 cut(s)	313, 609
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	5 cut(s)	48, 175, 320, 352, 487
HpyCH4III	ACNGT	2 cut(s)	167, 372
HpyCH4V	TGCA	5 cut(s)	117, 160, 380, 601, 609
HpyF10VI	GCNNNNNNNGC	3 cut(s)	467, 476, 598
Hsp92II	CATG	6 cut(s)	274, 342, 352, 590, 605, 618
HspAI	GCGC	1 cut(s)	6
KspI	CCGCGG	2 cut(s)	474, 480
Kzo9I	GATC	2 cut(s)	393, 550
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	94, 128
LpnPI	CCDG	9 cut(s)	32, 74, 136, 138, 251, 285, 422, 483, 580
LweI	GCATC	1 cut(s)	147
MalI	GATC	2 cut(s)	395, 552
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	2 cut(s)	393, 550
MboII	GAAGA	8 cut(s)	40, 76, 199, 259, 355, 437, 440, 524
MhlI	GDGCHC	3 cut(s)	91, 141, 611
MluCI	AATT	4 cut(s)	118, 170, 304, 523
MnlI	CCTC	8 cut(s)	48, 60, 93, 183, 328, 357, 439, 451
MseI	TTAA	4 cut(s)	12, 195, 216, 318
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	2 cut(s)	473, 479
MspI	CCGG	3 cut(s)	19, 61, 567
MspR9I	CCNGG	2 cut(s)	61, 568
MvnI	CGCG	2 cut(s)	473, 479
MwoI	GCNNNNNNNGC	3 cut(s)	467, 476, 598
NciI	CCSGG	2 cut(s)	61, 568
NcoI	CCATGG	1 cut(s)	586
NdeII	GATC	2 cut(s)	393, 550
NlaIII	CATG	6 cut(s)	274, 342, 352, 590, 605, 618
NlaIV	GGNNCC	2 cut(s)	59, 236
NotI	GCGGCCGC	1 cut(s)	474
NsbI	TGCGCA	1 cut(s)	7
NspI	RCATGY	1 cut(s)	352
OliI	CACNNNNGTG	1 cut(s)	165
PaeR7I	CTCGAG	2 cut(s)	84, 443
PagI	TCATGA	2 cut(s)	270, 614
PciI	ACATGT	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	49, 464
PkrI	GCNGC	3 cut(s)	472, 475, 478
PpuMI	RGGWCCY	1 cut(s)	57
PscI	ACATGT	1 cut(s)	348
PshBI	ATTAAT	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	59, 236
PspPI	GGNCC	4 cut(s)	35, 57, 235, 590
PspPPI	RGGWCCY	1 cut(s)	57
PspXI	VCTCGAGB	2 cut(s)	84, 443
PstNI	CAGNNNCTG	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	91
SacII	CCGCGG	2 cut(s)	474, 480
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	12, 195, 216, 318
SatI	GCNGC	3 cut(s)	471, 474, 477
Sau3AI	GATC	2 cut(s)	393, 550
Sau96I	GGNCC	4 cut(s)	35, 57, 235, 590
ScrFI	CCNGG	2 cut(s)	61, 568
SduI	GDGCHC	3 cut(s)	91, 141, 611
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	594
Sfr274I	CTCGAG	2 cut(s)	84, 443
Sfr303I	CCGCGG	2 cut(s)	474, 480
SgrBI	CCGCGG	2 cut(s)	474, 480
SinI	GGWCC	3 cut(s)	35, 57, 235
SlaI	CTCGAG	2 cut(s)	84, 443
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	2 cut(s)	84, 443
SmoI	CTYRAG	2 cut(s)	84, 443
Sse9I	AATT	4 cut(s)	118, 170, 304, 523
SsiI	CCGC	5 cut(s)	33, 471, 473, 477, 479
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	59, 566
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	2 cut(s)	167, 372
TaqI	TCGA	3 cut(s)	85, 396, 444
TasI	AATT	4 cut(s)	118, 170, 304, 523
TauI	GCSGC	3 cut(s)	473, 476, 479
TfiI	GAWTC	2 cut(s)	49, 464
Tru1I	TTAA	4 cut(s)	12, 195, 216, 318
Tru9I	TTAA	4 cut(s)	12, 195, 216, 318
TscAI	CASTG	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	251, 259, 287, 525
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	141
VneI	GTGCAC	1 cut(s)	607
VpaK11BI	GGWCC	3 cut(s)	35, 57, 235
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	2 cut(s)	170, 523
XceI	RCATGY	1 cut(s)	352
XhoI	CTCGAG	2 cut(s)	84, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.