Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009473

Physical Location & Seq

Genomic Coordinates Forward (+)

30565777 .. 30568373

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1231300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGGAATCCGAGAAGGACCCGGAAGAGGGTTCGTGCAATCCGTCGAGCTCCCGATGGAAGTGTCTTTCAGAAATGCAATTCCTGTGGGGCTTCCGTCCCCATTGCTTTGGCTGGGATGCACGAGTGTGAATTCAACGATAACGTGAAGAGGTTCAGAGGCGTTAGCGTGGATGTTAAGAAACAGAGCATTTGGGACCAGCTTGTAATCAGGGCCCCTTGCCATTTCTTCTTGAAAGAGCTTACCAAGACAAGCAAGGCTGGAAATTGGGTTGCCATTAATCGAGAAGGGTTTGAGGCATGGAAGAACAAGTCCGACAAGGAGAGACAGCCATATGTTGCCGAAGCTGAAAAGATCGACAAGGCTTGCCTGAAAGCTTTACTTGAAGAAGCAAATGATAAGTTTAAGGTAGATGATGAGGCAGATTCGGCCGCTGTCGGGAACAATGGGAAGCCTGGTGAGCCACAGTTTTCTGAAGACTATGAGAATTCTGATGGCTCTCATGTATTTTGGGATCACTCTGCTACAACTGGATCTTGGCACACCTACCATAGGTCTCTAACTCTGCTACAACTGGATCTTGGCACACCTACCAGGCCAATGGTGCATGAGTTCACCTCATGGAACTGGAAAATGGTGCATGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box_2

Protein Analysis

217

Amino Acids

24.54

Weight (kDa)

8.55

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05330 AT5G05330 AT5G05330
fragaria_vesca	FvH4_7g25601 FvH4_7g25601 FvH4_7g25601 FvH4_7g25601
malus_domestica	MD01G1163300.v1.1 MD07G1231300.v1.1
prunus_persica	Prupe.2G261300_v2.0.a1
pyrus_communis	pycom01g17790
rosa_chinensis	RchiOBHm_Chr1g0371741
rosa_laevigata	RLG00000026945
rosa_multiflora	Rmu_sc0001755.1_g000054 Rmu_sc0019360.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285480
rosa_rugosa	Rorug01G0365900
rosa_samantha	Rh1AG376000 Rh1BG339400 Rh1CG352500 Rh1DG370500
rosa_wichuraiana	Rw1G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	432
AclWI	GGATC	3 cut(s)	522, 541, 585
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	2 cut(s)	131, 487
AcuI	CTGAAG	1 cut(s)	495
AfiI	CCNNNNNNNGG	4 cut(s)	27, 28, 438, 552
AgsI	TTSAA	3 cut(s)	136, 235, 386
AjnI	CCWGG	2 cut(s)	454, 593
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	5 cut(s)	50, 202, 241, 347, 377
AluI	AGCT	5 cut(s)	50, 202, 241, 347, 377
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	2 cut(s)	319, 561
AlwI	GGATC	3 cut(s)	522, 541, 585
AoxI	GGCC	3 cut(s)	213, 429, 596
ApaI	GGGCCC	1 cut(s)	217
ApoI	RAATTY	2 cut(s)	131, 487
AseI	ATTAAT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	152
AspS9I	GGNCC	4 cut(s)	18, 196, 213, 214
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	470, 607
AvaII	GGWCC	2 cut(s)	18, 196
BaeGI	GKGCMC	1 cut(s)	217
BanII	GRGCYC	2 cut(s)	52, 217
BauI	CACGAG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	52
BccI	CCATC	2 cut(s)	50, 488
BciT130I	CCWGG	2 cut(s)	456, 595
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	319, 561
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	3 cut(s)	22, 456, 595
Bme18I	GGWCC	2 cut(s)	18, 196
BmgT120I	GGNCC	4 cut(s)	18, 196, 213, 214
BmiI	GGNNCC	4 cut(s)	20, 197, 215, 216
BmrFI	CCNGG	3 cut(s)	22, 456, 595
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	483
BplI	GAGNNNNNCTC	2 cut(s)	602, 634
BpuMI	CCSGG	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 28, 438, 552
Bse1I	ACTGG	3 cut(s)	535, 579, 632
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	456, 595
BseGI	GGATG	2 cut(s)	123, 178
BseLI	CCNNNNNNNGG	4 cut(s)	27, 28, 438, 552
BseMI	GCAATG	1 cut(s)	102
BseNI	ACTGG	3 cut(s)	535, 579, 632
BseSI	GKGCMC	1 cut(s)	217
BseX3I	CGGCCG	1 cut(s)	429
BseYI	CCCAGC	1 cut(s)	113
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	3 cut(s)	215, 431, 598
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	2 cut(s)	83, 209
BslI	CCNNNNNNNGG	4 cut(s)	27, 28, 438, 552
BsmAI	GTCTC	2 cut(s)	319, 561
BsmFI	GGGAC	2 cut(s)	83, 209
BsnI	GGCC	3 cut(s)	215, 431, 598
Bso31I	GGTCTC	1 cut(s)	561
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	52, 217
Bsp143I	GATC	4 cut(s)	354, 514, 533, 577
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	3 cut(s)	215, 431, 598
BspLI	GGNNCC	4 cut(s)	20, 197, 215, 216
BspPI	GGATC	3 cut(s)	522, 541, 585
BspTNI	GGTCTC	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	3 cut(s)	535, 579, 632
BssMI	GATC	4 cut(s)	354, 514, 533, 577
BssSI	CACGAG	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	2 cut(s)	456, 595
Bst4CI	ACNGT	1 cut(s)	468
Bst6I	CTCTTC	2 cut(s)	20, 143
BstC8I	GCNNGC	1 cut(s)	367
BstENI	CCTNNNNNAGG	1 cut(s)	550
BstF5I	GGATG	2 cut(s)	123, 178
BstKTI	GATC	4 cut(s)	357, 517, 536, 580
BstMAI	GTCTC	2 cut(s)	319, 561
BstMBI	GATC	4 cut(s)	354, 514, 533, 577
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 460, 604
BstNI	CCWGG	2 cut(s)	456, 595
BstSCI	CCNGG	3 cut(s)	20, 454, 593
BstSLI	GKGCMC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	533, 577
BstXI	CCANNNNNNTGG	2 cut(s)	109, 601
BstYI	RGATCY	2 cut(s)	533, 577
BstZI	CGGCCG	1 cut(s)	429
BsuRI	GGCC	3 cut(s)	215, 431, 598
BtsCI	GGATG	2 cut(s)	123, 178
Cac8I	GCNNGC	1 cut(s)	367
Cfr13I	GGNCC	4 cut(s)	18, 196, 213, 214
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	5 cut(s)	300, 503, 608, 621, 641
DpnI	GATC	4 cut(s)	356, 516, 535, 579
DpnII	GATC	4 cut(s)	354, 514, 533, 577
EaeI	YGGCCR	1 cut(s)	429
EagI	CGGCCG	1 cut(s)	429
Eam1104I	CTCTTC	2 cut(s)	20, 143
EarI	CTCTTC	2 cut(s)	20, 143
Ecl136II	GAGCTC	1 cut(s)	50
EclXI	CGGCCG	1 cut(s)	429
Eco24I	GRGCYC	2 cut(s)	52, 217
Eco31I	GGTCTC	1 cut(s)	561
Eco47I	GGWCC	2 cut(s)	18, 196
Eco52I	CGGCCG	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	495
EcoICRI	GAGCTC	1 cut(s)	50
EcoNI	CCTNNNNNAGG	1 cut(s)	550
EcoO109I	RGGNCCY	3 cut(s)	18, 213, 214
EcoRI	GAATTC	2 cut(s)	131, 487
EcoRII	CCWGG	2 cut(s)	454, 593
EcoT38I	GRGCYC	2 cut(s)	52, 217
FaeI	CATG	5 cut(s)	303, 506, 611, 624, 644
FaiI	YATR	9 cut(s)	301, 334, 336, 483, 504, 552, 609, 622, 642
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	2 cut(s)	83, 209
FatI	CATG	5 cut(s)	299, 502, 607, 620, 640
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	2 cut(s)	130, 185
FriOI	GRGCYC	2 cut(s)	52, 217
Fsp4HI	GCNGC	1 cut(s)	432
GluI	GCNGC	1 cut(s)	432
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	215, 431, 598
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	5 cut(s)	303, 506, 611, 624, 644
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	2 cut(s)	7, 425
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	2 cut(s)	470, 607
Hpy166II	GTNNAC	1 cut(s)	615
Hpy188I	TCNGA	6 cut(s)	12, 72, 158, 316, 475, 493
Hpy188III	TCNNGA	4 cut(s)	53, 232, 284, 439
Hpy8I	GTNNAC	1 cut(s)	615
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	9, 281
HpyCH4III	ACNGT	1 cut(s)	468
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	5 cut(s)	38, 78, 121, 607, 640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 460, 604
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	5 cut(s)	303, 506, 611, 624, 644
Kzo9I	GATC	4 cut(s)	354, 514, 533, 577
LmnI	GCTCC	1 cut(s)	55
LweI	GCATC	1 cut(s)	108
MaeII	ACGT	1 cut(s)	144
MalI	GATC	4 cut(s)	356, 516, 535, 579
MboI	GATC	4 cut(s)	354, 514, 533, 577
MboII	GAAGA	6 cut(s)	37, 160, 220, 316, 398, 488
MflI	RGATCY	2 cut(s)	533, 577
MhlI	GDGCHC	2 cut(s)	52, 217
MluCI	AATT	4 cut(s)	79, 131, 265, 487
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	6 cut(s)	21, 144, 152, 289, 412, 628
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	3 cut(s)	177, 279, 405
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	3 cut(s)	22, 456, 595
MvaI	CCWGG	2 cut(s)	456, 595
MwoI	GCNNNNNNNGC	3 cut(s)	428, 460, 604
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	4 cut(s)	354, 514, 533, 577
NlaIII	CATG	5 cut(s)	303, 506, 611, 624, 644
NlaIV	GGNNCC	4 cut(s)	20, 197, 215, 216
OliI	CACNNNNGTG	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	7, 425
PkrI	GCNGC	1 cut(s)	433
PpuMI	RGGWCCY	1 cut(s)	18
PshBI	ATTAAT	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	454, 593
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	2 cut(s)	454, 593
PspN4I	GGNNCC	4 cut(s)	20, 197, 215, 216
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	4 cut(s)	18, 196, 213, 214
PspPPI	RGGWCCY	1 cut(s)	18
PsuI	RGATCY	2 cut(s)	533, 577
RseI	CAYNNNNRTG	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	52
SaqAI	TTAA	3 cut(s)	177, 279, 405
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	4 cut(s)	354, 514, 533, 577
Sau96I	GGNCC	4 cut(s)	18, 196, 213, 214
ScrFI	CCNGG	3 cut(s)	22, 456, 595
SduI	GDGCHC	2 cut(s)	52, 217
SfaNI	GCATC	1 cut(s)	108
SinI	GGWCC	2 cut(s)	18, 196
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	4 cut(s)	79, 131, 265, 487
SsiI	CCGC	1 cut(s)	432
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	3 cut(s)	20, 454, 593
TaaI	ACNGT	1 cut(s)	468
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	46, 283, 357
TasI	AATT	4 cut(s)	79, 131, 265, 487
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	2 cut(s)	7, 425
Tru1I	TTAA	3 cut(s)	177, 279, 405
Tru9I	TTAA	3 cut(s)	177, 279, 405
TspGWI	ACGGA	2 cut(s)	32, 85
VpaK11BI	GGWCC	2 cut(s)	18, 196
VspI	ATTAAT	1 cut(s)	279
XagI	CCTNNNNNAGG	1 cut(s)	550
XapI	RAATTY	2 cut(s)	131, 487
XmnI	GAANNNNTTC	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.