Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009473

Physical Location & Seq

Genomic Coordinates Forward (+)

60889191 .. 60891426

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG376000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGAATCTGAGGAGGACCCGGAAAAGAGTCCGTGCAATCCCTCGTGCCCCAGATGGAAGTGCCTTTCAAAATTGTAATAAATGTGGGGTTTCTGTGCCTATTGCTTTGGCTGTGATGCATGAGTGTGAACCCAACAAGGAGATGAAGAGGTTTAAAGGTGTAGGCTATGATGTTGAGGAGAAGCAGAGCTTTTGGGACCAGCTAGTTGTGATGGCGCCTTTTCATTTCTTCATGAAAGAGTTTACAAAGACCAGGGAGGGTGGAGATTGGGTTGAGACTAACCGAGACGGGTTTGAGGTGTGGAAGAAAATGTCCGAGAAGGAGAGGCAACCATATGTCAAAGAAGCACAGAGGATTGATGAGGCTTATCAGAAATCTTTGCTCAAAGAATCAAATGATGGGCTAAAGGTAGATGATGAAGCAGATTCTGCAAATACAGCTGGGAACAATGGGAAGTTTGGTGAGTTGTATGAAGACTCAGACAATCAGAGTTCTGATTTTCTTGGTGAATCATGGGACAATTCTGTTAGAACTGGATCTTGGCACACCTACCATCGGTCTCGCTCTCTCCCCCTACATTTGTTCATTATTGTTTGGCTACAATTGTTTTTCCCTTTGATCTTTTGTTCTGCATATTCCTGCTACATTCATAACTTTTGCCTTGTGAAACAGGCCAATGGTGCATCAGTTTACCCCATGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box_2

Protein Analysis

235

Amino Acids

27.19

Weight (kDa)

7.0

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05330 AT5G05330 AT5G05330
fragaria_vesca	FvH4_7g25601 FvH4_7g25601 FvH4_7g25601 FvH4_7g25601
malus_domestica	MD01G1163300.v1.1 MD07G1231300.v1.1
prunus_persica	Prupe.2G261300_v2.0.a1
pyrus_communis	pycom01g17790
rosa_chinensis	RchiOBHm_Chr1g0371741
rosa_laevigata	RLG00000026945
rosa_multiflora	Rmu_sc0001755.1_g000054 Rmu_sc0019360.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285480
rosa_rugosa	Rorug01G0365900
rosa_samantha	Rh1AG376000 Rh1BG339400 Rh1CG352500 Rh1DG370500
rosa_wichuraiana	Rw1G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	547
AcyI	GRCGYC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	254
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AluBI	AGCT	3 cut(s)	192, 205, 443
AluI	AGCT	3 cut(s)	192, 205, 443
Alw26I	GTCTC	3 cut(s)	272, 282, 567
AlwI	GGATC	1 cut(s)	547
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	675
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	18, 199
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	3 cut(s)	16, 476, 521
AvaII	GGWCC	2 cut(s)	18, 199
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	483
BccI	CCATC	4 cut(s)	50, 208, 395, 564
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	272, 282, 567
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	22, 256
Bme18I	GGWCC	2 cut(s)	18, 199
BmgT120I	GGNCC	2 cut(s)	18, 199
BmiI	GGNNCC	3 cut(s)	20, 200, 219
BmrFI	CCNGG	2 cut(s)	22, 256
BmsI	GCATC	2 cut(s)	108, 695
BpiI	GAAGAC	1 cut(s)	483
BpuMI	CCSGG	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse1I	ACTGG	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	2 cut(s)	28, 194
BseSI	GKGCMC	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	443
BshFI	GGCC	1 cut(s)	677
BshNI	GGYRCC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	2 cut(s)	212, 533
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	3 cut(s)	272, 282, 567
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	212, 533
BsnI	GGCC	1 cut(s)	677
Bso31I	GGTCTC	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	539, 621
BspANI	GGCC	1 cut(s)	677
BspCNI	CTCAG	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	20, 200, 219
BspPI	GGATC	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	2 cut(s)	539, 621
BssNI	GRCGYC	1 cut(s)	218
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstDEI	CTNAG	2 cut(s)	11, 481
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	542, 624
BstMAI	GTCTC	3 cut(s)	272, 282, 567
BstMBI	GATC	2 cut(s)	539, 621
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 440, 683
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	20, 254
BstSLI	GKGCMC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuRI	GGCC	1 cut(s)	677
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	18, 199
CviAII	CATG	4 cut(s)	122, 235, 516, 700
CviJI	RGCY	9 cut(s)	113, 168, 192, 205, 368, 406, 443, 601, 677
CviKI_1	RGCY	9 cut(s)	113, 168, 192, 205, 368, 406, 443, 601, 677
DdeI	CTNAG	2 cut(s)	11, 481
DinI	GGCGCC	1 cut(s)	219
DpnI	GATC	2 cut(s)	541, 623
DpnII	GATC	2 cut(s)	539, 621
DraI	TTTAAA	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	18, 199
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	123
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	4 cut(s)	125, 238, 519, 703
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	2 cut(s)	212, 533
FatI	CATG	4 cut(s)	121, 234, 515, 699
FauNDI	CATATG	1 cut(s)	337
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	677
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	4 cut(s)	125, 238, 519, 703
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	6 cut(s)	7, 30, 392, 428, 479, 512
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	3 cut(s)	16, 476, 521
Hpy166II	GTNNAC	3 cut(s)	131, 246, 694
Hpy188I	TCNGA	6 cut(s)	12, 319, 375, 484, 492, 499
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	3 cut(s)	131, 246, 694
HpyAV	CCTTC	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	38, 121, 434, 635, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 440, 683
HpyF3I	CTNAG	2 cut(s)	11, 481
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	4 cut(s)	125, 238, 519, 703
HspAI	GCGC	1 cut(s)	218
KasI	GGCGCC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	539, 621
LpnPI	CCDG	9 cut(s)	35, 66, 215, 241, 268, 429, 522, 655, 659
LweI	GCATC	2 cut(s)	108, 695
MaeI	CTAG	1 cut(s)	206
MalI	GATC	2 cut(s)	541, 623
MboI	GATC	2 cut(s)	539, 621
MboII	GAAGA	4 cut(s)	160, 223, 319, 488
MfeI	CAATTG	1 cut(s)	605
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	3 cut(s)	73, 523, 605
Mly113I	GGCGCC	1 cut(s)	218
MlyI	GAGTC	2 cut(s)	39, 473
Mph1103I	ATGCAT	1 cut(s)	123
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	22, 256
MunI	CAATTG	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	3 cut(s)	431, 440, 683
NarI	GGCGCC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	2 cut(s)	539, 621
NlaIII	CATG	4 cut(s)	125, 238, 519, 703
NlaIV	GGNNCC	3 cut(s)	20, 200, 219
NsiI	ATGCAT	1 cut(s)	123
PagI	TCATGA	1 cut(s)	234
PfeI	GAWTC	4 cut(s)	7, 392, 428, 512
PleI	GAGTC	2 cut(s)	38, 473
PluTI	GGCGCC	1 cut(s)	221
PpsI	GAGTC	2 cut(s)	38, 473
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	20, 200, 219
PspPI	GGNCC	2 cut(s)	18, 199
PspPPI	RGGWCCY	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	539, 621
Sau96I	GGNCC	2 cut(s)	18, 199
SchI	GAGTC	2 cut(s)	39, 473
ScrFI	CCNGG	2 cut(s)	22, 256
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	8 cut(s)	155, 163, 194, 207, 303, 414, 445, 554
SfaNI	GCATC	2 cut(s)	108, 695
SfoI	GGCGCC	1 cut(s)	219
SinI	GGWCC	2 cut(s)	18, 199
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	3 cut(s)	73, 523, 605
SspDI	GGCGCC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	20, 254
TaqII	GACCGA	1 cut(s)	549
TasI	AATT	3 cut(s)	73, 523, 605
TfiI	GAWTC	4 cut(s)	7, 392, 428, 512
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TspDTI	ATGAA	8 cut(s)	161, 215, 223, 251, 435, 489, 577, 641
TspGWI	ACGGA	1 cut(s)	23
VpaK11BI	GGWCC	2 cut(s)	18, 199
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.