Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009473

Physical Location & Seq

Genomic Coordinates Forward (+)

47386788 .. 47389115

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG339400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGTGAATCTGAGGAGGACCCGGAAAAGAGTCCGTGCAATCCCTCGTGCCCCAGATGGAAGTGCCTTTCAAAATTGTAATAAATGTGGGGTTTCTGTGCCTATTGCTTTGGCTGTGATGCATGAGTGTGAACCCAACAAGGAGGTGAAGAGGTTTAAAGGTGTAGGCTATGACGTTGAGGAGAAGCAGAGCTTTTGGGACCAGCTAGTTGTGATGGCGCCTTTTCATTTCTTCATGAAAGAGTTTACAAAGACCAGGGAGGGTGGAGATTGGGTTGAGACTAACCGAGACGGGTTTGAGGTGTGGAAAAAAATGTCCGAGAAGGAGAGGCAACCATATGTCAAAGAAGCAGAGAGGATTGATGAGGCTTATCAGAAAGCTTTGCTCAAAGAAACAAATGATGGGCTAAAGGTATATGGATGCCAACTAAGTTCTGAATATATGGTATTGGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box_2

Protein Analysis

152

Amino Acids

17.72

Weight (kDa)

8.3

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05330 AT5G05330 AT5G05330
fragaria_vesca	FvH4_7g25601 FvH4_7g25601 FvH4_7g25601 FvH4_7g25601
malus_domestica	MD01G1163300.v1.1 MD07G1231300.v1.1
prunus_persica	Prupe.2G261300_v2.0.a1
pyrus_communis	pycom01g17790
rosa_chinensis	RchiOBHm_Chr1g0371741
rosa_laevigata	RLG00000026945
rosa_multiflora	Rmu_sc0001755.1_g000054 Rmu_sc0019360.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285480
rosa_rugosa	Rorug01G0365900
rosa_samantha	Rh1AG376000 Rh1BG339400 Rh1CG352500 Rh1DG370500
rosa_wichuraiana	Rw1G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	3 cut(s)	192, 205, 380
AluI	AGCT	3 cut(s)	192, 205, 380
Alw26I	GTCTC	2 cut(s)	272, 282
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	18, 199
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	16, 157
AvaII	GGWCC	2 cut(s)	18, 199
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	45
BccI	CCATC	3 cut(s)	50, 208, 395
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	272, 282
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	22, 256
Bme18I	GGWCC	2 cut(s)	18, 199
BmgT120I	GGNCC	2 cut(s)	18, 199
BmiI	GGNNCC	3 cut(s)	20, 200, 219
BmrFI	CCNGG	2 cut(s)	22, 256
BmsI	GCATC	2 cut(s)	108, 410
BpuMI	CCSGG	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	425
BseRI	GAGGAG	2 cut(s)	28, 194
BseSI	GKGCMC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	272, 282
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	20, 200, 219
BspT107I	GGYRCC	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	255
BssNI	GRCGYC	1 cut(s)	218
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	11, 428
BstF5I	GGATG	1 cut(s)	425
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	272, 282
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	20, 254
BstSLI	GKGCMC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	425
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	18, 199
CviAII	CATG	2 cut(s)	122, 235
CviJI	RGCY	7 cut(s)	113, 168, 192, 205, 368, 380, 406
CviKI_1	RGCY	7 cut(s)	113, 168, 192, 205, 368, 380, 406
DdeI	CTNAG	2 cut(s)	11, 428
DinI	GGCGCC	1 cut(s)	219
DraI	TTTAAA	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	18, 199
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	123
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	2 cut(s)	125, 238
FaiI	YATR	9 cut(s)	123, 171, 236, 337, 339, 415, 417, 441, 443
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	121, 234
FauNDI	CATATG	1 cut(s)	337
FokI	GGATG	1 cut(s)	432
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	221
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	125, 238
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	2 cut(s)	7, 30
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	2 cut(s)	16, 157
Hpy166II	GTNNAC	2 cut(s)	131, 246
Hpy188I	TCNGA	4 cut(s)	12, 319, 375, 436
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	131, 246
HpyAV	CCTTC	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	38, 121
HpyF3I	CTNAG	2 cut(s)	11, 428
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	125, 238
HspAI	GCGC	1 cut(s)	218
KasI	GGCGCC	1 cut(s)	217
LpnPI	CCDG	5 cut(s)	35, 66, 215, 241, 268
LweI	GCATC	2 cut(s)	108, 410
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	174
MboII	GAAGA	2 cut(s)	160, 223
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	1 cut(s)	73
Mly113I	GGCGCC	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	39
Mph1103I	ATGCAT	1 cut(s)	123
MseI	TTAA	2 cut(s)	156, 457
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	22, 256
MvaI	CCWGG	1 cut(s)	256
NarI	GGCGCC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	337
NlaIII	CATG	2 cut(s)	125, 238
NlaIV	GGNNCC	3 cut(s)	20, 200, 219
NsiI	ATGCAT	1 cut(s)	123
PagI	TCATGA	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	38
PluTI	GGCGCC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	20, 200, 219
PspPI	GGNCC	2 cut(s)	18, 199
PspPPI	RGGWCCY	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	156, 457
Sau96I	GGNCC	2 cut(s)	18, 199
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	22, 256
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	9 cut(s)	147, 155, 163, 177, 194, 207, 303, 382, 414
SfaNI	GCATC	2 cut(s)	108, 410
SfoI	GGCGCC	1 cut(s)	219
SinI	GGWCC	2 cut(s)	18, 199
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	1 cut(s)	73
SspDI	GGCGCC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	20, 254
TaiI	ACGT	1 cut(s)	177
TasI	AATT	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	156, 457
Tru9I	TTAA	2 cut(s)	156, 457
TspDTI	ATGAA	3 cut(s)	215, 223, 251
TspGWI	ACGGA	1 cut(s)	23
VpaK11BI	GGWCC	2 cut(s)	18, 199
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.