Rorug01G0365900

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009473
Physical Location & Seq
Forward (+)
48100580 .. 48101242
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0365900.1

Sequence Viewer

Length: 384 bp
ATGAAAAGGGGTATTACTAATTTGTACGAATACCAAACTTCCATAGACATAGCCATTTTTGAGGGGGAGAGTCCAACAACATTAGAAAATAATTTCTTGGCTGAATTTACCATCAATAATGTTCCTCCAGCTCGGAAGGGAGCTCCTAAATATGATATTCGCTTTGATATTGATGCTGATGGTATTCTATCATGTGTCTCTGCTGAGGATAAGTCCACTGGTGTGAAGCAAGGGTGTACAATCATCTCTACAAGCAAGATAAAGCAAGAAGGAATTGAGTCCATAGTCTTTAGTTTTGGTGGAGTGAGGCAGTGGATGGGTTTTGTTTTGCTGGTGGTTTATGCATGTTGCGACTTGCTGGTTCTTTTGCTAACAGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box_2

Protein Analysis

127

Amino Acids

14.03

Weight (kDa)

4.62

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 9 - 96 5.2e-17 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 2 cut(s) 26, 238
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 2 cut(s) 131, 143
AluI AGCT 2 cut(s) 131, 143
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 104
BanII GRGCYC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 145
BbvCI CCTCAGC 1 cut(s) 204
BccI CCATC 3 cut(s) 119, 173, 310
BcoDI GTCTC 1 cut(s) 202
BmsI GCATC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 236
BsrI ACTGG 1 cut(s) 223
BstAUI TGTACA 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 348
BtsCI GGATG 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 317
BtsIMutI CAGTG 2 cut(s) 216, 317
Csp6I GTAC 2 cut(s) 25, 237
CviAII CATG 2 cut(s) 192, 345
CviJI RGCY 4 cut(s) 53, 101, 131, 143
CviKI_1 RGCY 4 cut(s) 53, 101, 131, 143
CviQI GTAC 2 cut(s) 25, 237
DdeI CTNAG 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 143
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 2 cut(s) 195, 348
FaiI YATR 7 cut(s) 44, 50, 153, 193, 284, 342, 346
FatI CATG 2 cut(s) 191, 344
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 111
Hin1II CATG 2 cut(s) 195, 348
HinfI GANTC 2 cut(s) 70, 278
Hpy166II GTNNAC 2 cut(s) 216, 237
Hpy188I TCNGA 2 cut(s) 135, 383
Hpy8I GTNNAC 2 cut(s) 216, 237
HpyAV CCTTC 2 cut(s) 130, 263
HpyCH4V TGCA 1 cut(s) 344
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 2 cut(s) 195, 348
LmnI GCTCC 2 cut(s) 140, 148
LpnPI CCDG 4 cut(s) 141, 204, 317, 344
LweI GCATC 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 4 cut(s) 19, 91, 104, 273
MlyI GAGTC 2 cut(s) 79, 287
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 4 cut(s) 55, 135, 199, 300
Mph1103I ATGCAT 1 cut(s) 346
MslI CAYNNNNRTG 1 cut(s) 221
NlaIII CATG 2 cut(s) 195, 348
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 348
OliI CACNNNNGTG 1 cut(s) 221
PleI GAGTC 2 cut(s) 78, 286
PpsI GAGTC 2 cut(s) 78, 286
Psp124BI GAGCTC 1 cut(s) 145
RsaI GTAC 2 cut(s) 26, 238
RsaNI GTAC 2 cut(s) 25, 237
RseI CAYNNNNRTG 1 cut(s) 221
SacI GAGCTC 1 cut(s) 145
SchI GAGTC 2 cut(s) 79, 287
SduI GDGCHC 1 cut(s) 145
SetI ASST 2 cut(s) 133, 145
SfaNI GCATC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 4 cut(s) 19, 91, 104, 273
SstI GAGCTC 1 cut(s) 145
TasI AATT 4 cut(s) 19, 91, 104, 273
TatI WGTACW 1 cut(s) 236
TscAI CASTG 2 cut(s) 223, 317
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 223, 317
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.