Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009473

Physical Location & Seq

Genomic Coordinates Forward (+)

26834135 .. 26836450

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1163300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGAATCCGAGGACCCGGAAGAGGGTTCGTCCAATCCCTCGAGCTCCCGACGGAAGTGCCTTTCAAAAGTGCAATTCCTGTGGAGCTTCAGTGCCCATTGCTTTGGCTGGGATGCACGACTGTGAAATCAACGAGAAGGTGAAGAGGTTTAAAGGCGTAAGCGTGGATGTTAAGAAACAGAGCATTTGGGAGCAGCTCGTAGTCATTGCCCCTTTTCATTTCTTCATGAAAGAATTTACCAAGACGAGCAAGGCTGAAAATTGGGTTGCCATTAATAGAGAAGGGTTCGAGGCATGGAAGAACATGTCCGAGAAGGAGAGGCAACCGTATGTTGCAGAAGCTGAAAAGATTGACAAGGCTTACCAGAAAGCTTTGCTTGAAGAAGAAAATGATAAACTTGGGGTAGATGATGAGGCAGATTCAGCCGCGGCCACTGGGAACAATGGGAAGGCTGGTGAGTTTTATGAAGACTACGAGAATTCTGACGGCTCTGATGTATTTTGGGATTACTCTGCTACGACTGGGTCTTGGCACACCTACCATGGGCCTATGGTGCATGAGTGCACCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box_2

Protein Analysis

192

Amino Acids

21.52

Weight (kDa)

5.45

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05330 AT5G05330 AT5G05330
fragaria_vesca	FvH4_7g25601 FvH4_7g25601 FvH4_7g25601 FvH4_7g25601
malus_domestica	MD01G1163300.v1.1 MD07G1231300.v1.1
prunus_persica	Prupe.2G261300_v2.0.a1
pyrus_communis	pycom01g17790
rosa_chinensis	RchiOBHm_Chr1g0371741
rosa_laevigata	RLG00000026945
rosa_multiflora	Rmu_sc0001755.1_g000054 Rmu_sc0019360.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285480
rosa_rugosa	Rorug01G0365900
rosa_samantha	Rh1AG376000 Rh1BG339400 Rh1CG352500 Rh1DG370500
rosa_wichuraiana	Rw1G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	431
AciI	CCGC	2 cut(s)	429, 431
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	2 cut(s)	236, 481
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	24, 25, 546
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	2 cut(s)	68, 383
AleI	CACNNNNGTG	1 cut(s)	123
AluBI	AGCT	5 cut(s)	47, 89, 199, 344, 374
AluI	AGCT	5 cut(s)	47, 89, 199, 344, 374
Alw21I	GWGCWC	2 cut(s)	49, 569
Alw44I	GTGCAC	1 cut(s)	565
AlwNI	CAGNNNCTG	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	2 cut(s)	432, 548
ApaLI	GTGCAC	1 cut(s)	565
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	2 cut(s)	236, 481
AseI	ATTAAT	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	15, 548
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	154, 470
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	15
BaeGI	GKGCMC	2 cut(s)	99, 569
BanII	GRGCYC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	2 cut(s)	49, 569
BbvI	GCAGC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	505
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BcnI	CCSGG	1 cut(s)	19
BisI	GCNGC	3 cut(s)	197, 429, 432
BlsI	GCNGC	3 cut(s)	198, 430, 433
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	15, 548
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	19
BmrI	ACTGGG	2 cut(s)	447, 534
BmsI	GCATC	1 cut(s)	105
BmuI	ACTGGG	2 cut(s)	447, 534
BpiI	GAAGAC	1 cut(s)	477
BplI	GAGNNNNNCTC	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	11, 429, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 25, 546
Bse1I	ACTGG	2 cut(s)	442, 529
Bse3DI	GCAATG	2 cut(s)	99, 207
BseDI	CCNNGG	3 cut(s)	11, 429, 544
BseGI	GGATG	2 cut(s)	120, 175
BseLI	CCNNNNNNNGG	3 cut(s)	24, 25, 546
BseMI	GCAATG	2 cut(s)	99, 207
BseNI	ACTGG	2 cut(s)	442, 529
BseSI	GKGCMC	2 cut(s)	99, 569
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	434, 550
BsiHKAI	GWGCWC	2 cut(s)	49, 569
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	24, 25, 546
BsnI	GGCC	2 cut(s)	434, 550
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	3 cut(s)	49, 99, 569
Bsp19I	CCATGG	1 cut(s)	544
BspACI	CCGC	2 cut(s)	429, 431
BspANI	GGCC	2 cut(s)	434, 550
BspFNI	CGCG	1 cut(s)	431
BspHI	TCATGA	2 cut(s)	228, 572
BspLI	GGNNCC	1 cut(s)	17
BsrDI	GCAATG	2 cut(s)	99, 207
BsrI	ACTGG	2 cut(s)	442, 529
BssECI	CCNNGG	3 cut(s)	11, 429, 544
BssT1I	CCWWGG	1 cut(s)	544
Bst4CI	ACNGT	2 cut(s)	125, 330
Bst6I	CTCTTC	2 cut(s)	17, 140
BstDSI	CCRYGG	2 cut(s)	429, 544
BstF5I	GGATG	2 cut(s)	120, 175
BstFNI	CGCG	1 cut(s)	431
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 556
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	17
BstSLI	GKGCMC	2 cut(s)	99, 569
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	477
BstXI	CCANNNNNNTGG	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	434, 550
BtgI	CCRYGG	2 cut(s)	429, 544
BtsCI	GGATG	2 cut(s)	120, 175
BtsIMutI	CAGTG	2 cut(s)	99, 435
CaiI	CAGNNNCTG	1 cut(s)	344
CciI	TCATGA	2 cut(s)	228, 572
Cfr13I	GGNCC	2 cut(s)	15, 548
Cfr42I	CCGCGG	1 cut(s)	432
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	6 cut(s)	229, 297, 307, 545, 560, 573
DraI	TTTAAA	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	432
Eam1104I	CTCTTC	2 cut(s)	17, 140
EarI	CTCTTC	2 cut(s)	17, 140
Ecl136II	GAGCTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	544
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	6 cut(s)	232, 300, 310, 548, 563, 576
FaiI	YATR	9 cut(s)	230, 298, 308, 333, 468, 546, 554, 561, 574
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FatI	CATG	6 cut(s)	228, 296, 306, 544, 559, 572
Fnu4HI	GCNGC	3 cut(s)	197, 429, 432
FokI	GGATG	2 cut(s)	127, 182
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	3 cut(s)	197, 429, 432
GluI	GCNGC	3 cut(s)	197, 429, 432
GsaI	CCCAGC	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	434, 550
HapII	CCGG	1 cut(s)	19
Hin1II	CATG	6 cut(s)	232, 300, 310, 548, 563, 576
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	2 cut(s)	7, 422
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	2 cut(s)	154, 470
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	4 cut(s)	12, 313, 487, 496
Hpy188III	TCNNGA	3 cut(s)	50, 229, 573
Hpy8I	GTNNAC	1 cut(s)	567
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	133, 278, 310, 445
HpyCH4III	ACNGT	2 cut(s)	125, 330
HpyCH4V	TGCA	5 cut(s)	75, 118, 338, 559, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 556
Hsp92II	CATG	6 cut(s)	232, 300, 310, 548, 563, 576
KspI	CCGCGG	1 cut(s)	432
LmnI	GCTCC	3 cut(s)	52, 86, 193
LpnPI	CCDG	7 cut(s)	32, 94, 96, 380, 423, 441, 510
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	105
MboII	GAAGA	7 cut(s)	34, 157, 217, 313, 395, 398, 482
MhlI	GDGCHC	3 cut(s)	49, 99, 569
MluCI	AATT	4 cut(s)	76, 236, 262, 481
MnlI	CCTC	7 cut(s)	6, 18, 51, 141, 286, 315, 409
MseI	TTAA	3 cut(s)	153, 174, 276
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	19
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	425, 556
NciI	CCSGG	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	544
NlaIII	CATG	6 cut(s)	232, 300, 310, 548, 563, 576
NlaIV	GGNNCC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	310
OliI	CACNNNNGTG	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	42
PagI	TCATGA	2 cut(s)	228, 572
PciI	ACATGT	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	7, 422
PflFI	GACNNNGTC	1 cut(s)	526
PkrI	GCNGC	3 cut(s)	198, 430, 433
PpuMI	RGGWCCY	1 cut(s)	15
PscI	ACATGT	1 cut(s)	306
PshBI	ATTAAT	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	2 cut(s)	15, 548
PspPPI	RGGWCCY	1 cut(s)	15
PspXI	VCTCGAGB	1 cut(s)	42
PstNI	CAGNNNCTG	1 cut(s)	344
PsyI	GACNNNGTC	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	49
SacII	CCGCGG	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	153, 174, 276
SatI	GCNGC	3 cut(s)	197, 429, 432
Sau96I	GGNCC	2 cut(s)	15, 548
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	3 cut(s)	49, 99, 569
SetI	ASST	9 cut(s)	49, 91, 144, 152, 201, 346, 376, 542, 572
SfaNI	GCATC	1 cut(s)	105
Sfr274I	CTCGAG	1 cut(s)	42
Sfr303I	CCGCGG	1 cut(s)	432
SgrBI	CCGCGG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	15
SlaI	CTCGAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	4 cut(s)	76, 236, 262, 481
SsiI	CCGC	2 cut(s)	429, 431
SstI	GAGCTC	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	2 cut(s)	125, 330
TaqI	TCGA	2 cut(s)	43, 291
TasI	AATT	4 cut(s)	76, 236, 262, 481
TauI	GCSGC	2 cut(s)	431, 434
TfiI	GAWTC	2 cut(s)	7, 422
Tru1I	TTAA	3 cut(s)	153, 174, 276
Tru9I	TTAA	3 cut(s)	153, 174, 276
TscAI	CASTG	2 cut(s)	99, 442
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	4 cut(s)	209, 217, 245, 483
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	2 cut(s)	99, 442
Tth111I	GACNNNGTC	1 cut(s)	526
VneI	GTGCAC	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	15
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	2 cut(s)	236, 481
XceI	RCATGY	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.