Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009473

Physical Location & Seq

Genomic Coordinates Forward (+)

19521150 .. 19523456

Gene Structure 2307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25601.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTGAATCTAAGGAGGACCCGGAAAAGAGTTCGTGCAATCCCTCGTGCCCCGGATGGGAGTGCTTTTCAAAATTGTAATAAATGTGGGGTTTCTGTGGCTGTTGCTTTGGCTGGGATGCATGAGTGTGAACCCAACAAGGAGGTGAAGAGGTTCAAAGGTGTAGGCTTTGATGTTGAGGAGAAGCAGAGCTTTTGTGATCAACTCATTGTGATGGCTCCTTTTCATTTCTTCATGAAAGAGTTTACAAAGACCAGAAAGGGTGGAGATTGGATTGAGATTAACCGAGAAGGGTTTGAGGTGTGGAAGAAAATGTCAGAAAAGGAGAGGCAACCATATGTGAAAGAAGCAGAAAGGATTGATGAGGCTTATCAGAAAGCTTTGCTCAAAGAATCAAATGATGGGCTAAAGGTAGATGATGAAGCAGATTCTGCAAAATCAGCTGGGAACAATGGAAAGTTTGGTGAGATCTACGAAGACTCAGATAACGAGAGTTCTGATTTTCTTGGTGAATCTTGGGATAATTCTGTTAGAACTGGATCTTGGCATACCTACCATCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box_2

Protein Analysis

188

Amino Acids

21.45

Weight (kDa)

6.14

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05330 AT5G05330 AT5G05330
fragaria_vesca	FvH4_7g25601 FvH4_7g25601 FvH4_7g25601 FvH4_7g25601
malus_domestica	MD01G1163300.v1.1 MD07G1231300.v1.1
prunus_persica	Prupe.2G261300_v2.0.a1
pyrus_communis	pycom01g17790
rosa_chinensis	RchiOBHm_Chr1g0371741
rosa_laevigata	RLG00000026945
rosa_multiflora	Rmu_sc0001755.1_g000054 Rmu_sc0019360.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285480
rosa_rugosa	Rorug01G0365900
rosa_samantha	Rh1AG376000 Rh1BG339400 Rh1CG352500 Rh1DG370500
rosa_wichuraiana	Rw1G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	547
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	2 cut(s)	71, 157
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AluBI	AGCT	3 cut(s)	192, 380, 443
AluI	AGCT	3 cut(s)	192, 380, 443
AlwI	GGATC	1 cut(s)	547
AlwNI	CAGNNNCTG	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	18
AsuC2I	CCSGG	2 cut(s)	22, 53
AsuHPI	GGTGA	4 cut(s)	16, 157, 476, 521
AvaII	GGWCC	1 cut(s)	18
BaeGI	GKGCMC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	483
BccI	CCATC	3 cut(s)	50, 208, 395
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	22, 53
BglII	AGATCT	1 cut(s)	468
Bme1390I	CCNGG	2 cut(s)	22, 53
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	20, 219
BmrFI	CCNGG	2 cut(s)	22, 53
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	483
BpuMI	CCSGG	2 cut(s)	22, 53
Bsa29I	ATCGAT	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	541
BseCI	ATCGAT	1 cut(s)	559
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	61, 123
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	52
BseYI	CCCAGC	2 cut(s)	113, 443
BshVI	ATCGAT	1 cut(s)	559
BsiSI	CCGG	2 cut(s)	22, 53
BslI	CCNNNNNNNGG	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	199, 468, 539
BspCNI	CTCAG	1 cut(s)	494
BspDI	ATCGAT	1 cut(s)	559
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	20, 219
BspPI	GGATC	1 cut(s)	547
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	3 cut(s)	199, 468, 539
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstDEI	CTNAG	2 cut(s)	11, 481
BstF5I	GGATG	2 cut(s)	61, 123
BstKTI	GATC	3 cut(s)	202, 471, 542
BstMBI	GATC	3 cut(s)	199, 468, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 440
BstSCI	CCNGG	2 cut(s)	20, 51
BstSLI	GKGCMC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	468, 539
BstYI	RGATCY	2 cut(s)	468, 539
Bsu15I	ATCGAT	1 cut(s)	559
BsuTUI	ATCGAT	1 cut(s)	559
BtsCI	GGATG	2 cut(s)	61, 123
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	559
CviAII	CATG	2 cut(s)	122, 235
CviJI	RGCY	9 cut(s)	101, 113, 168, 192, 218, 368, 380, 406, 443
CviKI_1	RGCY	9 cut(s)	101, 113, 168, 192, 218, 368, 380, 406, 443
DdeI	CTNAG	2 cut(s)	11, 481
DpnI	GATC	3 cut(s)	201, 470, 541
DpnII	GATC	3 cut(s)	199, 468, 539
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	123
FaeI	CATG	2 cut(s)	125, 238
FaiI	YATR	5 cut(s)	123, 236, 337, 339, 549
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FatI	CATG	2 cut(s)	121, 234
FauNDI	CATATG	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	199
FokI	GGATG	2 cut(s)	68, 130
GsaI	CCCAGC	2 cut(s)	117, 447
HapII	CCGG	2 cut(s)	22, 53
Hin1II	CATG	2 cut(s)	125, 238
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	5 cut(s)	7, 392, 428, 479, 512
HpaII	CCGG	2 cut(s)	22, 53
HphI	GGTGA	4 cut(s)	16, 157, 476, 521
Hpy166II	GTNNAC	2 cut(s)	131, 246
Hpy188I	TCNGA	4 cut(s)	319, 375, 484, 499
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	131, 246
HpyAV	CCTTC	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	38, 121, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 440
HpyF3I	CTNAG	2 cut(s)	11, 481
Hsp92II	CATG	2 cut(s)	125, 238
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	199, 468, 539
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	6 cut(s)	35, 66, 99, 268, 429, 522
LweI	GCATC	1 cut(s)	108
MalI	GATC	3 cut(s)	201, 470, 541
MboI	GATC	3 cut(s)	199, 468, 539
MboII	GAAGA	4 cut(s)	160, 223, 319, 488
MflI	RGATCY	2 cut(s)	468, 539
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	2 cut(s)	73, 523
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	8 cut(s)	9, 54, 136, 144, 172, 292, 321, 358
Mph1103I	ATGCAT	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	2 cut(s)	126, 212
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	22, 53
MspR9I	CCNGG	2 cut(s)	22, 53
MwoI	GCNNNNNNNGC	2 cut(s)	431, 440
NciI	CCSGG	2 cut(s)	22, 53
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	3 cut(s)	199, 468, 539
NlaIII	CATG	2 cut(s)	125, 238
NlaIV	GGNNCC	2 cut(s)	20, 219
NsiI	ATGCAT	1 cut(s)	123
PagI	TCATGA	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	4 cut(s)	7, 392, 428, 512
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
PspFI	CCCAGC	2 cut(s)	113, 443
PspN4I	GGNNCC	2 cut(s)	20, 219
PspPI	GGNCC	1 cut(s)	18
PspPPI	RGGWCCY	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	2 cut(s)	468, 539
PvuII	CAGCTG	1 cut(s)	443
RseI	CAYNNNNRTG	2 cut(s)	126, 212
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	3 cut(s)	199, 468, 539
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	2 cut(s)	22, 53
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	9 cut(s)	147, 155, 163, 194, 303, 382, 414, 445, 554
SfaNI	GCATC	1 cut(s)	108
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	2 cut(s)	126, 212
Sse9I	AATT	2 cut(s)	73, 523
StyD4I	CCNGG	2 cut(s)	20, 51
TaqI	TCGA	1 cut(s)	559
TasI	AATT	2 cut(s)	73, 523
TfiI	GAWTC	4 cut(s)	7, 392, 428, 512
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TspDTI	ATGAA	4 cut(s)	215, 223, 251, 435
VpaK11BI	GGWCC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.