Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009473

Physical Location & Seq

Genomic Coordinates Forward (+)

59508297 .. 59510952

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG370500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGAATCTGAGGAGGACCCGGAAAAGAGTCCGTGCAATCCCTCGTGCCCCAGATGGAAGTGCCTTTCAAAATTGTAATAAATGTGGGGTTTCTGTGCCTATTGCTTTGGCTGTGATGCATGAGTGTGAACCCAGCAAGGAGATGAAGAGGTTTAAAGGTGTAGGCTATGATGTTGAGGAGAAGCAGAGCTTTTGGGACCAACTAGTTGTGATGGCGCCTTTTCATTTCTTCATGAAAGAGTTTACAAAGACCAGGGAGGGTGGAGATTGGGTTGAGACTAACCGAGACGGGTTTGAGGTGTGGAAGAAAATGTCCCAGAAGGAGAGGCAACCATATGTCAAAGAAGCAGAGAGGATTGATGAGGCTTATCAGAAAGCTTTGCTCAAAGAATCAAATGATGGGCTAAAGGTAGATGATGAAGCAGATTCTGCAAATACAGCTGGGAACAATGGGAAGTTTGGTGAGTTGTATGAAGACTCAGACAATGAGAGTTCTGATTTTCTTGGTGAATCATGGGACAATTCAGTTAGAACTGGATCTTGGCACACCTACCATCGGTCTCGCTCTCCCCCCCTACATTTGTTCTCATTATTGTTTGGCTGCAATTGTTTTTCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box_2

Protein Analysis

207

Amino Acids

23.81

Weight (kDa)

6.01

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05330 AT5G05330 AT5G05330
fragaria_vesca	FvH4_7g25601 FvH4_7g25601 FvH4_7g25601 FvH4_7g25601
malus_domestica	MD01G1163300.v1.1 MD07G1231300.v1.1
prunus_persica	Prupe.2G261300_v2.0.a1
pyrus_communis	pycom01g17790
rosa_chinensis	RchiOBHm_Chr1g0371741
rosa_laevigata	RLG00000026945
rosa_multiflora	Rmu_sc0001755.1_g000054 Rmu_sc0019360.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285480
rosa_rugosa	Rorug01G0365900
rosa_samantha	Rh1AG376000 Rh1BG339400 Rh1CG352500 Rh1DG370500
rosa_wichuraiana	Rw1G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	547
AcyI	GRCGYC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgsI	TTSAA	1 cut(s)	71
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	254
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AluBI	AGCT	3 cut(s)	192, 380, 443
AluI	AGCT	3 cut(s)	192, 380, 443
Alw26I	GTCTC	3 cut(s)	272, 282, 567
AlwI	GGATC	1 cut(s)	547
AlwNI	CAGNNNCTG	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	18, 199
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	3 cut(s)	16, 476, 521
AvaII	GGWCC	2 cut(s)	18, 199
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	590
BccI	CCATC	4 cut(s)	50, 208, 395, 564
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	272, 282, 567
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	1 cut(s)	604
BlsI	GCNGC	1 cut(s)	605
Bme1390I	CCNGG	2 cut(s)	22, 256
Bme18I	GGWCC	2 cut(s)	18, 199
BmgT120I	GGNCC	2 cut(s)	18, 199
BmiI	GGNNCC	3 cut(s)	20, 200, 219
BmrFI	CCNGG	2 cut(s)	22, 256
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	483
BpuMI	CCSGG	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse1I	ACTGG	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	2 cut(s)	28, 194
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	590
BseYI	CCCAGC	2 cut(s)	134, 443
BshNI	GGYRCC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	3 cut(s)	212, 301, 533
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	3 cut(s)	272, 282, 567
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	3 cut(s)	212, 301, 533
Bso31I	GGTCTC	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	539
BspCNI	CTCAG	1 cut(s)	494
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	20, 200, 219
BspPI	GGATC	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	539
BssNI	GRCGYC	1 cut(s)	218
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstDEI	CTNAG	2 cut(s)	11, 481
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	542
BstMAI	GTCTC	3 cut(s)	272, 282, 567
BstMBI	GATC	1 cut(s)	539
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 440
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	20, 254
BstSLI	GKGCMC	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	590
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	18, 199
CviAII	CATG	3 cut(s)	122, 235, 516
CviJI	RGCY	8 cut(s)	113, 168, 192, 368, 380, 406, 443, 603
CviKI_1	RGCY	8 cut(s)	113, 168, 192, 368, 380, 406, 443, 603
DdeI	CTNAG	2 cut(s)	11, 481
DinI	GGCGCC	1 cut(s)	219
DpnI	GATC	1 cut(s)	541
DpnII	GATC	1 cut(s)	539
DraI	TTTAAA	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	18, 199
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	123
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	3 cut(s)	125, 238, 519
FaiI	YATR	7 cut(s)	123, 171, 236, 337, 339, 474, 517
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	3 cut(s)	212, 301, 533
FatI	CATG	3 cut(s)	121, 234, 515
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	604
Fsp4HI	GCNGC	1 cut(s)	604
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	604
GsaI	CCCAGC	2 cut(s)	138, 447
HaeII	RGCGCY	1 cut(s)	221
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	125, 238, 519
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	6 cut(s)	7, 30, 392, 428, 479, 512
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	3 cut(s)	16, 476, 521
Hpy166II	GTNNAC	2 cut(s)	131, 246
Hpy188I	TCNGA	4 cut(s)	12, 375, 484, 499
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	131, 246
HpyAV	CCTTC	1 cut(s)	316
HpyCH4V	TGCA	4 cut(s)	38, 121, 434, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 440
HpyF3I	CTNAG	2 cut(s)	11, 481
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	125, 238, 519
HspAI	GCGC	1 cut(s)	218
KasI	GGCGCC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	539
LpnPI	CCDG	8 cut(s)	35, 66, 148, 241, 268, 332, 429, 522
Lsp1109I	GCAGC	1 cut(s)	590
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	206
MalI	GATC	1 cut(s)	541
MboI	GATC	1 cut(s)	539
MboII	GAAGA	4 cut(s)	160, 223, 319, 488
MfeI	CAATTG	1 cut(s)	607
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	3 cut(s)	73, 523, 607
Mly113I	GGCGCC	1 cut(s)	218
MlyI	GAGTC	2 cut(s)	39, 473
Mph1103I	ATGCAT	1 cut(s)	123
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	22, 256
MunI	CAATTG	1 cut(s)	607
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	431, 440
NarI	GGCGCC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	1 cut(s)	539
NlaIII	CATG	3 cut(s)	125, 238, 519
NlaIV	GGNNCC	3 cut(s)	20, 200, 219
NsiI	ATGCAT	1 cut(s)	123
PagI	TCATGA	1 cut(s)	234
PfeI	GAWTC	4 cut(s)	7, 392, 428, 512
PkrI	GCNGC	1 cut(s)	605
PleI	GAGTC	2 cut(s)	38, 473
PluTI	GGCGCC	1 cut(s)	221
PpsI	GAGTC	2 cut(s)	38, 473
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	254
PspFI	CCCAGC	2 cut(s)	134, 443
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	20, 200, 219
PspPI	GGNCC	2 cut(s)	18, 199
PspPPI	RGGWCCY	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	604
Sau3AI	GATC	1 cut(s)	539
Sau96I	GGNCC	2 cut(s)	18, 199
SchI	GAGTC	2 cut(s)	39, 473
ScrFI	CCNGG	2 cut(s)	22, 256
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	8 cut(s)	155, 163, 194, 303, 382, 414, 445, 554
SfaNI	GCATC	1 cut(s)	108
SfoI	GGCGCC	1 cut(s)	219
SinI	GGWCC	2 cut(s)	18, 199
SmiMI	CAYNNNNRTG	1 cut(s)	126
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	3 cut(s)	73, 523, 607
SspDI	GGCGCC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	20, 254
TaqII	GACCGA	1 cut(s)	549
TasI	AATT	3 cut(s)	73, 523, 607
TfiI	GAWTC	4 cut(s)	7, 392, 428, 512
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	1 cut(s)	603
TspDTI	ATGAA	6 cut(s)	161, 215, 223, 251, 435, 489
TspGWI	ACGGA	1 cut(s)	23
VpaK11BI	GGWCC	2 cut(s)	18, 199
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.