Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001755.1

Orthogroup ID

OG0009473

Physical Location & Seq

Genomic Coordinates Reverse (-)

253829 .. 257020

Gene Structure 3192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001755.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggtgaatctgaggaggacccggaaaagagtccgtgcaatccctcgtgccccagatggaagggactttcaaaattgtaataaatgtggggtttctgtgcctattgctttggctgtgatgcatgagtgtgaacccaacaaggagatgaagaggtttaaaggtgtaggctatgatgttgaggagaagcagagcttttgggaccagctagttgtgatggcgccttttcatttcttcatgaaagagtttacaaagaccagggagggtggagattgggttgagactaaccgagacgggtttgaggtgtggaagaaaatgtccgagaaggagaggcaaccatatgtcaaagaagcacagaggattgatgaggcttatcagaaagctttgctcgaagaatcaaatgatgggctaaaggtagatgatgaagcagattctgcaaatacagctgggaacaatgggaagtttggtgagttgtatgaagactcagacaatgagagttctgattttcttggtgaatcatgggacaattctgttagaactggatcttggcacacctaccatcgctgtcggattgcgaaaagattgagatttcggcacccaatctcgtctcattggagaatatgttgtatatctgataatctcaatcctctccggtatgtgccggatctcctcaaggttgcaccccttttggaagagtttgtgttgactgaatttaccttcaggttgctcgataagatgaatcaacaagaaacaaggaatctagaatgttcaagatcatttacacatgatcacttgaaaaaggttaaattgcagggatttcatggtaattggtgtgagatagaatttgccctttggatactgaggaattcagcaaagctcgatatactggtggttaatccggttggacagttctacgatgtatatttacaaaaatggtgggatgttcgagacatacgttcatcatcttggagagaggacaggatacttgtccaagaaaaactcgagcaagtaaagactaatgctcgatttataattgagactgattttgtcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box_2

Protein Analysis

350

Amino Acids

41.35

Weight (kDa)

6.54

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05330 AT5G05330 AT5G05330
fragaria_vesca	FvH4_7g25601 FvH4_7g25601 FvH4_7g25601 FvH4_7g25601
malus_domestica	MD01G1163300.v1.1 MD07G1231300.v1.1
prunus_persica	Prupe.2G261300_v2.0.a1
pyrus_communis	pycom01g17790
rosa_chinensis	RchiOBHm_Chr1g0371741
rosa_laevigata	RLG00000026945
rosa_multiflora	Rmu_sc0001755.1_g000054 Rmu_sc0019360.1_g000001
rosa_roxburghii	Rroxscaffold_4G00285480
rosa_rugosa	Rorug01G0365900
rosa_samantha	Rh1AG376000 Rh1BG339400 Rh1CG352500 Rh1DG370500
rosa_wichuraiana	Rw1G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1028
AccB1I	GGYRCC	2 cut(s)	217, 591
AclWI	GGATC	2 cut(s)	547, 669
AcsI	RAATTY	3 cut(s)	707, 839, 862
AcuI	CTGAAG	1 cut(s)	700
AcyI	GRCGYC	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	71, 768, 793
AjnI	CCWGG	1 cut(s)	254
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AluBI	AGCT	5 cut(s)	192, 205, 380, 443, 874
AluI	AGCT	5 cut(s)	192, 205, 380, 443, 874
Alw26I	GTCTC	5 cut(s)	272, 282, 609, 939, 1028
AlwI	GGATC	2 cut(s)	547, 669
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	998
ApoI	RAATTY	3 cut(s)	707, 839, 862
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	18, 199
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	3 cut(s)	16, 476, 521
AvaI	CYCGRG	1 cut(s)	998
AvaII	GGWCC	2 cut(s)	18, 199
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	2 cut(s)	217, 591
BauI	CACGAG	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	483
BccI	CCATC	4 cut(s)	50, 208, 395, 564
BciT130I	CCWGG	1 cut(s)	256
BciVI	GTATCC	2 cut(s)	846, 972
BclI	TGATCA	1 cut(s)	784
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	5 cut(s)	272, 282, 609, 939, 1028
BfaI	CTAG	2 cut(s)	206, 758
BfoI	RGCGCY	1 cut(s)	221
BfuI	GTATCC	2 cut(s)	846, 972
Bme1390I	CCNGG	2 cut(s)	22, 256
Bme18I	GGWCC	2 cut(s)	18, 199
BmeT110I	CYCGRG	1 cut(s)	998
BmgT120I	GGNCC	2 cut(s)	18, 199
BmiI	GGNNCC	4 cut(s)	20, 200, 219, 593
BmrFI	CCNGG	2 cut(s)	22, 256
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	255
BsaWI	WCCGGW	2 cut(s)	648, 895
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 288, 604, 634
Bse1I	ACTGG	2 cut(s)	541, 888
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	943
BseMII	CTCAG	2 cut(s)	495, 848
BseNI	ACTGG	2 cut(s)	541, 888
BseRI	GAGGAG	3 cut(s)	28, 194, 656
BseSI	GKGCMC	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	443
BshNI	GGYRCC	2 cut(s)	217, 591
BsiHKCI	CYCGRG	1 cut(s)	998
BsiSI	CCGG	4 cut(s)	22, 649, 659, 896
BslFI	GGGAC	3 cut(s)	77, 212, 533
BsmAI	GTCTC	5 cut(s)	272, 282, 609, 939, 1028
BsmBI	CGTCTC	2 cut(s)	282, 609
BsmFI	GGGAC	3 cut(s)	77, 212, 533
BsoBI	CYCGRG	1 cut(s)	998
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	4 cut(s)	539, 661, 770, 784
BspCNI	CTCAG	2 cut(s)	494, 849
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	4 cut(s)	20, 200, 219, 593
BspPI	GGATC	2 cut(s)	547, 669
BspT107I	GGYRCC	2 cut(s)	217, 591
BsrI	ACTGG	2 cut(s)	541, 888
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	4 cut(s)	539, 661, 770, 784
BssNI	GRCGYC	1 cut(s)	218
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	906
Bst6I	CTCTTC	2 cut(s)	143, 684
BstACI	GRCGYC	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstDEI	CTNAG	3 cut(s)	11, 481, 857
BstF5I	GGATG	1 cut(s)	943
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	4 cut(s)	542, 664, 773, 787
BstMAI	GTCTC	5 cut(s)	272, 282, 609, 939, 1028
BstMBI	GATC	4 cut(s)	539, 661, 770, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 440
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	20, 254
BstSLI	GKGCMC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	539, 661
BstYI	RGATCY	2 cut(s)	539, 661
BsuI	GTATCC	2 cut(s)	846, 972
BtgZI	GCGATG	1 cut(s)	542
BtsCI	GGATG	1 cut(s)	943
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	18, 199
CspCI	CAANNNNNGTGG	2 cut(s)	914, 949
CviAII	CATG	5 cut(s)	122, 235, 516, 782, 818
CviJI	RGCY	9 cut(s)	113, 168, 192, 205, 368, 380, 406, 443, 874
CviKI_1	RGCY	9 cut(s)	113, 168, 192, 205, 368, 380, 406, 443, 874
DdeI	CTNAG	3 cut(s)	11, 481, 857
DinI	GGCGCC	1 cut(s)	219
DpnI	GATC	4 cut(s)	541, 663, 772, 786
DpnII	GATC	4 cut(s)	539, 661, 770, 784
DraI	TTTAAA	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	143, 684
EarI	CTCTTC	2 cut(s)	143, 684
Eco47I	GGWCC	2 cut(s)	18, 199
Eco57I	CTGAAG	1 cut(s)	700
Eco88I	CYCGRG	1 cut(s)	998
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	862
EcoRII	CCWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	123
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
Esp3I	CGTCTC	2 cut(s)	282, 609
FaeI	CATG	5 cut(s)	125, 238, 519, 785, 821
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	3 cut(s)	77, 212, 533
FatI	CATG	5 cut(s)	121, 234, 515, 781, 817
FauNDI	CATATG	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	784
FokI	GGATG	1 cut(s)	950
FspBI	CTAG	2 cut(s)	206, 758
GlaI	GCGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	221
HapII	CCGG	4 cut(s)	22, 649, 659, 896
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	5 cut(s)	125, 238, 519, 785, 821
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	8 cut(s)	7, 30, 392, 428, 479, 512, 736, 754
HpaII	CCGG	4 cut(s)	22, 649, 659, 896
HphI	GGTGA	3 cut(s)	16, 476, 521
Hpy166II	GTNNAC	3 cut(s)	131, 246, 702
Hpy188I	TCNGA	7 cut(s)	12, 319, 375, 484, 499, 567, 631
Hpy188III	TCNNGA	4 cut(s)	235, 758, 768, 944
Hpy8I	GTNNAC	3 cut(s)	131, 246, 702
HpyAV	CCTTC	3 cut(s)	54, 316, 724
HpyCH4III	ACNGT	1 cut(s)	906
HpyCH4IV	ACGT	1 cut(s)	952
HpyCH4V	TGCA	5 cut(s)	38, 121, 434, 677, 808
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 440
HpyF3I	CTNAG	3 cut(s)	11, 481, 857
HpySE526I	ACGT	1 cut(s)	952
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	5 cut(s)	125, 238, 519, 785, 821
HspAI	GCGC	1 cut(s)	218
KasI	GGCGCC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	539, 661, 770, 784
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	2 cut(s)	206, 758
MaeII	ACGT	1 cut(s)	952
MaeIII	GTNAC	1 cut(s)	1045
MalI	GATC	4 cut(s)	541, 663, 772, 786
MboI	GATC	4 cut(s)	539, 661, 770, 784
MboII	GAAGA	6 cut(s)	160, 223, 319, 401, 488, 701
MflI	RGATCY	2 cut(s)	539, 661
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	8 cut(s)	73, 523, 707, 803, 823, 839, 862, 1029
Mly113I	GGCGCC	1 cut(s)	218
MlyI	GAGTC	2 cut(s)	39, 473
MmeI	TCCRAC	2 cut(s)	545, 880
Mph1103I	ATGCAT	1 cut(s)	123
MseI	TTAA	3 cut(s)	156, 801, 891
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	4 cut(s)	22, 649, 659, 896
MspR9I	CCNGG	2 cut(s)	22, 256
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	431, 440
NarI	GGCGCC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	22
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	4 cut(s)	539, 661, 770, 784
NlaIII	CATG	5 cut(s)	125, 238, 519, 785, 821
NlaIV	GGNNCC	4 cut(s)	20, 200, 219, 593
NmuCI	GTSAC	1 cut(s)	1045
NsiI	ATGCAT	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	998
PagI	TCATGA	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	949
PfeI	GAWTC	6 cut(s)	7, 392, 428, 512, 736, 754
PleI	GAGTC	2 cut(s)	38, 473
PluTI	GGCGCC	1 cut(s)	221
PpsI	GAGTC	2 cut(s)	38, 473
PpuMI	RGGWCCY	1 cut(s)	18
PsiI	TTATAA	1 cut(s)	1028
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	4 cut(s)	20, 200, 219, 593
PspPI	GGNCC	2 cut(s)	18, 199
PspPPI	RGGWCCY	1 cut(s)	18
PspXI	VCTCGAGB	1 cut(s)	998
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	2 cut(s)	539, 661
PvuII	CAGCTG	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	3 cut(s)	156, 801, 891
Sau3AI	GATC	4 cut(s)	539, 661, 770, 784
Sau96I	GGNCC	2 cut(s)	18, 199
SchI	GAGTC	2 cut(s)	39, 473
ScrFI	CCNGG	2 cut(s)	22, 256
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	108
SfoI	GGCGCC	1 cut(s)	219
Sfr274I	CTCGAG	1 cut(s)	998
SinI	GGWCC	2 cut(s)	18, 199
SlaI	CTCGAG	1 cut(s)	998
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	668, 998
SmoI	CTYRAG	2 cut(s)	668, 998
Sse9I	AATT	8 cut(s)	73, 523, 707, 803, 823, 839, 862, 1029
SspDI	GGCGCC	1 cut(s)	217
SspMI	CTAG	2 cut(s)	206, 758
StyD4I	CCNGG	2 cut(s)	20, 254
TaaI	ACNGT	1 cut(s)	906
TaiI	ACGT	1 cut(s)	955
TaqI	TCGA	6 cut(s)	387, 726, 876, 943, 999, 1021
TasI	AATT	8 cut(s)	73, 523, 707, 803, 823, 839, 862, 1029
TfiI	GAWTC	6 cut(s)	7, 392, 428, 512, 736, 754
Tru1I	TTAA	3 cut(s)	156, 801, 891
Tru9I	TTAA	3 cut(s)	156, 801, 891
TseFI	GTSAC	1 cut(s)	1045
Tsp45I	GTSAC	1 cut(s)	1045
TspDTI	ATGAA	9 cut(s)	161, 215, 223, 251, 435, 489, 749, 806, 945
TspGWI	ACGGA	1 cut(s)	23
VpaK11BI	GGWCC	2 cut(s)	18, 199
XapI	RAATTY	3 cut(s)	707, 839, 862
XbaI	TCTAGA	1 cut(s)	757
XhoI	CTCGAG	1 cut(s)	998
XspI	CTAG	2 cut(s)	206, 758
Zsp2I	ATGCAT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.