Prupe.2G261300_v2.0.a1

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0009473
Physical Location & Seq
Forward (+)
27051157 .. 27053346
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G261300.1

Sequence Viewer

Length: 612 bp
ATGGCGAATCTGAGAAAGACCAGGAAGAGGGTTCATGGAATCCCTCGTGCTGCAGATGGAAGTGCTTTTCAAAAGTGCAACACCTGTGGGGCTTCGGTGCCCATTGCTTTGGCTGGCATGCACGAGTGTGATCTCAATCCGAAGGTGAAGAGGTTCAAGGGCGTATGCCTAGATGTTCAGCAACAGAGCTTTTATGACCAACTCATAGTCATGTCACCTTTTCATTTCTTCATGAAAGAGTTTACCAAGACTAGCAAAGCTGGAAATTGGGTTGCCATTAACCGAGAAGGGTTTGAGGCATGGAAGAACATGTCCGAGAAGGAGAGGCAACCATATGTTGCTGAAGCTGATAAGGTTGACAAGGCTTATGAGAAAGCTTTGCTTGAAGAAGTAGATGATAAGCTAAAGGTAGATGATGAGGCAGATTCAGCGATGGCCGGGAACAATGAGAAGGCTGGTGAGTTTTATGGAGACTATGAGAATTCTGATGGCACTGATGAGCTTTGGGACAACTATGGTAGAGCTGGATCCTGGCAGACCTACGCTCGGCCAATAGGGTATGAGTTTCCCTCAGGCAAATGGAGTATGATTTTTGAAGACTCTCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box_2

Protein Analysis

204

Amino Acids

23.03

Weight (kDa)

5.23

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AclWI GGATC 2 cut(s) 522, 535
AcoI YGGCCR 2 cut(s) 435, 548
AcsI RAATTY 1 cut(s) 481
AcuI CTGAAG 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 27, 546
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 4 cut(s) 71, 157, 386, 596
AjnI CCWGG 2 cut(s) 20, 530
AleI CACNNNNGTG 1 cut(s) 126
AluBI AGCT 7 cut(s) 189, 260, 347, 377, 403, 502, 524
AluI AGCT 7 cut(s) 189, 260, 347, 377, 403, 502, 524
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 2 cut(s) 522, 535
AoxI GGCC 2 cut(s) 435, 548
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 481
Asp700I GAANNNNTTC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 157, 207, 470
AxyI CCTNAGG 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 102
BamHI GGATCC 1 cut(s) 527
BanI GGYRCC 1 cut(s) 97
BauI CACGAG 2 cut(s) 45, 122
BbsI GAAGAC 1 cut(s) 603
BbvI GCAGC 1 cut(s) 37
BccI CCATC 3 cut(s) 50, 427, 482
BciT130I CCWGG 2 cut(s) 22, 532
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 465
BfaI CTAG 2 cut(s) 170, 252
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 3 cut(s) 22, 439, 532
BmiI GGNNCC 2 cut(s) 99, 529
BmrFI CCNGG 3 cut(s) 22, 439, 532
BpiI GAAGAC 1 cut(s) 603
BplI GAGNNNNNCTC 2 cut(s) 554, 586
BpuEI CTTGAG 1 cut(s) 588
BpuMI CCSGG 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 135
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 546
Bse21I CCTNAGG 1 cut(s) 571
Bse3DI GCAATG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 135
BseBI CCWGG 2 cut(s) 22, 532
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 27, 546
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 2 cut(s) 437, 550
BshNI GGYRCC 1 cut(s) 97
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 2 cut(s) 27, 546
BsmAI GTCTC 1 cut(s) 465
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 2 cut(s) 437, 550
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 130, 527
BspANI GGCC 2 cut(s) 437, 550
BspCNI CTCAG 1 cut(s) 584
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 99, 529
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 2 cut(s) 522, 535
BspT107I GGYRCC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 102
BssMI GATC 2 cut(s) 130, 527
BssSI CACGAG 2 cut(s) 45, 122
Bst2BI CACGAG 2 cut(s) 45, 122
Bst2UI CCWGG 2 cut(s) 22, 532
Bst6I CTCTTC 2 cut(s) 20, 143
BstC8I GCNNGC 2 cut(s) 115, 119
BstDEI CTNAG 2 cut(s) 11, 571
BstKTI GATC 2 cut(s) 133, 530
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 2 cut(s) 130, 527
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 2 cut(s) 22, 532
BstNSI RCATGY 2 cut(s) 121, 313
BstSCI CCNGG 3 cut(s) 20, 437, 530
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 1 cut(s) 527
BstXI CCANNNNNNTGG 1 cut(s) 109
BstYI RGATCY 1 cut(s) 527
Bsu36I CCTNAGG 1 cut(s) 571
BsuRI GGCC 2 cut(s) 437, 550
BtgZI GCGATG 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 115, 119
CciI TCATGA 1 cut(s) 231
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 6 cut(s) 35, 118, 211, 232, 300, 310
DdeI CTNAG 2 cut(s) 11, 571
DpnI GATC 2 cut(s) 132, 529
DpnII GATC 2 cut(s) 130, 527
EaeI YGGCCR 2 cut(s) 435, 548
Eam1104I CTCTTC 2 cut(s) 20, 143
EarI CTCTTC 2 cut(s) 20, 143
Eco57I CTGAAG 1 cut(s) 363
Eco81I CCTNAGG 1 cut(s) 571
EcoRI GAATTC 1 cut(s) 481
EcoRII CCWGG 2 cut(s) 20, 530
FaeI CATG 6 cut(s) 38, 121, 214, 235, 303, 313
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FaqI GGGAC 1 cut(s) 521
FatI CATG 6 cut(s) 34, 117, 210, 231, 299, 309
FauNDI CATATG 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 170, 252
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 437, 550
HapII CCGG 1 cut(s) 438
Hin1II CATG 6 cut(s) 38, 121, 214, 235, 303, 313
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 4 cut(s) 7, 39, 425, 599
HpaII CCGG 1 cut(s) 438
HphI GGTGA 3 cut(s) 157, 207, 470
Hpy166II GTNNAC 2 cut(s) 243, 358
Hpy188I TCNGA 4 cut(s) 12, 141, 316, 487
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 2 cut(s) 243, 358
HpyAV CCTTC 4 cut(s) 136, 281, 313, 445
HpyCH4V TGCA 3 cut(s) 53, 78, 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 2 cut(s) 11, 571
Hsp92II CATG 6 cut(s) 38, 121, 214, 235, 303, 313
Kzo9I GATC 2 cut(s) 130, 527
Lsp1109I GCAGC 1 cut(s) 37
MaeI CTAG 2 cut(s) 170, 252
MaeIII GTNAC 1 cut(s) 213
MalI GATC 2 cut(s) 132, 529
MboI GATC 2 cut(s) 130, 527
MboII GAAGA 6 cut(s) 37, 160, 220, 316, 398, 608
MflI RGATCY 1 cut(s) 527
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 2 cut(s) 265, 481
MlyI GAGTC 1 cut(s) 593
MnlI CCTC 7 cut(s) 21, 54, 144, 289, 318, 412, 580
MroXI GAANNNNTTC 1 cut(s) 152
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 2 cut(s) 126, 209
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 3 cut(s) 22, 439, 532
MvaI CCWGG 2 cut(s) 22, 532
MwoI GCNNNNNNNGC 1 cut(s) 428
NciI CCSGG 1 cut(s) 439
NdeI CATATG 1 cut(s) 334
NdeII GATC 2 cut(s) 130, 527
NlaIII CATG 6 cut(s) 38, 121, 214, 235, 303, 313
NlaIV GGNNCC 2 cut(s) 99, 529
NmeAIII GCCGAG 1 cut(s) 526
NmuCI GTSAC 1 cut(s) 213
NspI RCATGY 2 cut(s) 121, 313
OliI CACNNNNGTG 1 cut(s) 126
PaeI GCATGC 1 cut(s) 121
PagI TCATGA 1 cut(s) 231
PciI ACATGT 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 3 cut(s) 7, 39, 425
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
PscI ACATGT 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 20, 530
PspGI CCWGG 2 cut(s) 20, 530
PspN4I GGNNCC 2 cut(s) 99, 529
PstI CTGCAG 1 cut(s) 55
PsuI RGATCY 1 cut(s) 527
RseI CAYNNNNRTG 2 cut(s) 126, 209
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 130, 527
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 3 cut(s) 22, 439, 532
SduI GDGCHC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 51
SmiMI CAYNNNNRTG 2 cut(s) 126, 209
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
SphI GCATGC 1 cut(s) 121
Sse9I AATT 2 cut(s) 265, 481
SspMI CTAG 2 cut(s) 170, 252
StyD4I CCNGG 3 cut(s) 20, 437, 530
TasI AATT 2 cut(s) 265, 481
TfiI GAWTC 3 cut(s) 7, 39, 425
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 4 cut(s) 23, 212, 220, 248
TspRI CASTG 1 cut(s) 499
XapI RAATTY 1 cut(s) 481
XceI RCATGY 2 cut(s) 121, 313
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 2 cut(s) 170, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.