Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007468

Physical Location & Seq

Genomic Coordinates Reverse (-)

1855995 .. 1858903

Gene Structure 2909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGAGAGCACGGAGCAGCCGAGGAACATCTCCGGATCGATGCAGAGCCCTAGATCTCCGTCTTCGCATCCGTATCTGTCAGTCTCCGTCACAGATCCTGTCAAATTAGGCAATGGCGTACAAGCTTATATCTCTTACAGAGTTATCACCAAGACTAACTTGCCGGAGTACCAAGGACCCGAGAAGATTGTTATTAGACGATACAGTGATTTCGTCTGGTTACGGGATCGGCTTTTTGAAAAGTACAAGGGCATTTTCATTCCTCCTCTTCCAGAGAAGAGTGCTGTAGAAAAATTCCGCTTTAGTGCCGAATTTATTGAAATGAGGCGAGCAGCATTGGATATATTTGTTAATCGAATAGCATTACACCCTGAGCTTCAGCAGAGTGAGGATCTTAGGACCTTTTTGCAAGCAGATGAAGAGACAATGGACAGATTCAGGTTTCAGGAAACTAGTATATTCAAGAAGCCTGCAGATCTAATGCAAATGTTTAGGGATGTCCAGTCAAAAGTTAGTGATGCTGTCCTTGGAAAAGAAAAACCTGTTGAAGAAACTACTGCTGACTACGAGAAGCTTAAACATTACATTTTCGAGCTTGAGAACCACTTGACTGAGGCTCAGAAGCATGCGTATCGCCTAGTCAAGAGGCATAGAGAGTTGGGTCAATCACTGTTGGATTTTGGCAAGGCTGTAAAACTTCTTGGGGCTTGTGAGGGTGAACCTACAGGAAAAGCATTTTCCGATCTTGGAACTAAATCTGAACTGTTATCGATTAAGCTCCAGAAAGAGGCTCAACAAGTCCTGATGAACTTCGAGGAACCCTTGAAGGACTATGTTCGTTATGTACAATCGATTAAGGCAACAATAGCAGAACGAGGCACTGCTTTCAAACAACATTGTGAATTGTCAGAAACAACAAAGTTAAAAGAAATAAATCTTGACAAACTCATGCTCACACGTTCAGACAAAGTAGGAGAAGCTGAGATCGAATACAGAGAGATAAAAGCAGAAAGTGAGGAAGCCACGAGAAGATTTGAGAGGATAGTAAAGAGAATGGAAGATGAGATAGTAAGGTTTCAAGAGCAGAAGACGGAAGAGATGGGAGTGGCATTCCATCAGTTTGCGAAAGGACAAGCTCGCTTAGCAAACAGTGTCGCGGATGCTTGGAGATCCCTTCTTCCCAAACTTGAAGCTTCTTATTCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006897 GO:0006996 GO:0007034 GO:0007041 GO:0007275 GO:0008104 GO:0008150 GO:0008289 GO:0008333 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009987 GO:0010008 GO:0010252 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022622 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035091 GO:0042592 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

402

Amino Acids

46.52

Weight (kDa)

6.76

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	60 - 138	2.2e-22	PX domain
Vps5	PF09325	179 - 394	9.1e-22	Vps5 C terminal like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06140
fragaria_vesca	FvH4_6g19390 FvH4_6g19390 FvH4_6g19390
malus_domestica	MD12G1029600.v1.1 MD14G1029900.v1.1
prunus_persica	Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1
pyrus_communis	pycom12g02800 pycom14g02770
rosa_chinensis	RchiOBHm_Chr3g0474681
rosa_laevigata	RLG00000023902
rosa_multiflora	Rmu_sc0001126.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406980
rosa_rugosa	Rorug03G0142300.1 Rorug03G0142400 Rorug03G0142500.1 Rorug03G0142600 Rorug03G0142700
rosa_samantha	Rh3AG192900 Rh3BG222800 Rh3CG217600 Rh3DG218700
rosa_wichuraiana	Rw3G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1157
AccIII	TCCGGA	1 cut(s)	32
AciI	CCGC	2 cut(s)	298, 1157
AclWI	GGATC	5 cut(s)	43, 89, 234, 399, 1164
AcsI	RAATTY	2 cut(s)	293, 311
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	4 cut(s)	120, 170, 245, 846
AfiI	CCNNNNNNNGG	1 cut(s)	787
AflIII	ACRYGT	1 cut(s)	956
AgsI	TTSAA	8 cut(s)	239, 320, 463, 548, 826, 889, 1079, 1190
AhlI	ACTAGT	1 cut(s)	452
AluBI	AGCT	8 cut(s)	125, 376, 574, 595, 778, 980, 1136, 1193
AluI	AGCT	8 cut(s)	125, 376, 574, 595, 778, 980, 1136, 1193
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	88, 416
AlwI	GGATC	5 cut(s)	43, 89, 234, 399, 1164
AlwNI	CAGNNNCTG	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	179
Aor13HI	TCCGGA	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	16, 332
ApoI	RAATTY	2 cut(s)	293, 311
AspS9I	GGNCC	2 cut(s)	176, 399
AsuHPI	GGTGA	2 cut(s)	139, 728
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	2 cut(s)	176, 399
BanII	GRGCYC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	1024
BbsI	GAAGAC	2 cut(s)	54, 1094
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	28, 344
BccI	CCATC	2 cut(s)	1093, 1122
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BcoDI	GTCTC	2 cut(s)	88, 416
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	3 cut(s)	51, 453, 638
BfmI	CTRYAG	3 cut(s)	285, 471, 723
BglII	AGATCT	2 cut(s)	53, 475
BisI	GCNGC	2 cut(s)	17, 333
BlpI	GCTNAGC	1 cut(s)	1141
BlsI	GCNGC	2 cut(s)	18, 334
Bme18I	GGWCC	2 cut(s)	176, 399
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	176, 399
BmiI	GGNNCC	2 cut(s)	178, 819
BmsI	GCATC	4 cut(s)	30, 76, 508, 1150
BpiI	GAAGAC	2 cut(s)	54, 1094
BpmI	CTGGAG	1 cut(s)	764
Bpu10I	CCTNAGC	1 cut(s)	372
Bpu1102I	GCTNAGC	1 cut(s)	1141
BpuEI	CTTGAG	1 cut(s)	617
Bsa29I	ATCGAT	3 cut(s)	38, 770, 851
BsaJI	CCNNGG	3 cut(s)	20, 172, 526
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	787
Bse1I	ACTGG	1 cut(s)	502
Bse3DI	GCAATG	1 cut(s)	118
BseAI	TCCGGA	1 cut(s)	32
BseCI	ATCGAT	3 cut(s)	38, 770, 851
BseDI	CCNNGG	3 cut(s)	20, 172, 526
BseGI	GGATG	3 cut(s)	67, 502, 1165
BseLI	CCNNNNNNNGG	1 cut(s)	787
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	4 cut(s)	363, 603, 632, 972
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	28, 344
Bsh1236I	CGCG	1 cut(s)	1157
BshVI	ATCGAT	3 cut(s)	38, 770, 851
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	33, 164
BslI	CCNNNNNNNGG	1 cut(s)	787
BsmAI	GTCTC	2 cut(s)	88, 416
BsmI	GAATGC	1 cut(s)	1109
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	11, 50
Bsp13I	TCCGGA	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	844
Bsp143I	GATC	9 cut(s)	35, 53, 94, 226, 391, 475, 742, 984, 1169
Bsp1720I	GCTNAGC	1 cut(s)	1141
BspACI	CCGC	2 cut(s)	298, 1157
BspCNI	CTCAG	4 cut(s)	364, 604, 631, 973
BspDI	ATCGAT	3 cut(s)	38, 770, 851
BspEI	TCCGGA	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	1157
BspLI	GGNNCC	2 cut(s)	178, 819
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	5 cut(s)	43, 89, 234, 399, 1164
BsrDI	GCAATG	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	844
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	3 cut(s)	20, 172, 526
BssMI	GATC	9 cut(s)	35, 53, 94, 226, 391, 475, 742, 984, 1169
BssSI	CACGAG	1 cut(s)	1024
BssT1I	CCWWGG	2 cut(s)	172, 526
Bst2BI	CACGAG	1 cut(s)	1024
Bst4CI	ACNGT	4 cut(s)	206, 672, 765, 1151
Bst6I	CTCTTC	4 cut(s)	272, 273, 414, 1089
BstAUI	TGTACA	1 cut(s)	844
BstC8I	GCNNGC	5 cut(s)	330, 411, 471, 627, 1138
BstDEI	CTNAG	6 cut(s)	372, 395, 612, 618, 981, 1141
BstF5I	GGATG	3 cut(s)	67, 502, 1165
BstFNI	CGCG	1 cut(s)	1157
BstKTI	GATC	9 cut(s)	38, 56, 97, 229, 394, 478, 745, 987, 1172
BstMAI	GTCTC	2 cut(s)	88, 416
BstMBI	GATC	9 cut(s)	35, 53, 94, 226, 391, 475, 742, 984, 1169
BstMWI	GCNNNNNNNGC	2 cut(s)	866, 1142
BstNSI	RCATGY	1 cut(s)	629
BstSFI	CTRYAG	3 cut(s)	285, 471, 723
BstUI	CGCG	1 cut(s)	1157
BstV1I	GCAGC	2 cut(s)	28, 344
BstV2I	GAAGAC	2 cut(s)	54, 1094
BstX2I	RGATCY	5 cut(s)	53, 94, 391, 475, 1169
BstYI	RGATCY	5 cut(s)	53, 94, 391, 475, 1169
Bsu15I	ATCGAT	3 cut(s)	38, 770, 851
BsuTUI	ATCGAT	3 cut(s)	38, 770, 851
BtsCI	GGATG	3 cut(s)	67, 502, 1165
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	4 cut(s)	211, 668, 879, 1156
Cac8I	GCNNGC	5 cut(s)	330, 411, 471, 627, 1138
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	176, 399
ClaI	ATCGAT	3 cut(s)	38, 770, 851
Csp6I	GTAC	4 cut(s)	119, 169, 244, 845
CviAII	CATG	2 cut(s)	626, 949
CviQI	GTAC	4 cut(s)	119, 169, 244, 845
DdeI	CTNAG	6 cut(s)	372, 395, 612, 618, 981, 1141
DpnI	GATC	9 cut(s)	37, 55, 96, 228, 393, 477, 744, 986, 1171
DpnII	GATC	9 cut(s)	35, 53, 94, 226, 391, 475, 742, 984, 1169
Eam1104I	CTCTTC	4 cut(s)	272, 273, 414, 1089
EarI	CTCTTC	4 cut(s)	272, 273, 414, 1089
Eco130I	CCWWGG	2 cut(s)	172, 526
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	176, 399
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	179
EcoO109I	RGGNCCY	2 cut(s)	176, 399
EcoT14I	CCWWGG	2 cut(s)	172, 526
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	2 cut(s)	172, 526
FaeI	CATG	2 cut(s)	629, 952
FaiI	YATR	8 cut(s)	129, 344, 458, 627, 651, 834, 843, 950
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FatI	CATG	2 cut(s)	625, 948
Fnu4HI	GCNGC	2 cut(s)	17, 333
FokI	GGATG	3 cut(s)	54, 509, 1172
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	17, 333
FspBI	CTAG	3 cut(s)	51, 453, 638
GluI	GCNGC	2 cut(s)	17, 333
GsuI	CTGGAG	1 cut(s)	764
HapII	CCGG	2 cut(s)	33, 164
Hin1II	CATG	2 cut(s)	629, 952
HindIII	AAGCTT	3 cut(s)	123, 572, 1191
HinfI	GANTC	1 cut(s)	435
HpaII	CCGG	2 cut(s)	33, 164
HphI	GGTGA	2 cut(s)	139, 728
Hpy166II	GTNNAC	1 cut(s)	719
Hpy188I	TCNGA	5 cut(s)	621, 742, 760, 910, 964
Hpy188III	TCNNGA	9 cut(s)	33, 272, 446, 463, 643, 781, 802, 938, 1079
Hpy8I	GTNNAC	1 cut(s)	719
HpyAV	CCTTC	2 cut(s)	820, 1184
HpyCH4III	ACNGT	4 cut(s)	206, 672, 765, 1151
HpyCH4IV	ACGT	1 cut(s)	958
HpyCH4V	TGCA	4 cut(s)	43, 409, 473, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	866, 1142
HpyF3I	CTNAG	6 cut(s)	372, 395, 612, 618, 981, 1141
HpySE526I	ACGT	1 cut(s)	958
Hsp92II	CATG	2 cut(s)	629, 952
Kpn2I	TCCGGA	1 cut(s)	32
Kzo9I	GATC	9 cut(s)	35, 53, 94, 226, 391, 475, 742, 984, 1169
LmnI	GCTCC	2 cut(s)	13, 783
Lsp1109I	GCAGC	2 cut(s)	28, 344
LweI	GCATC	4 cut(s)	30, 76, 508, 1150
MaeI	CTAG	3 cut(s)	51, 453, 638
MaeII	ACGT	1 cut(s)	958
MaeIII	GTNAC	2 cut(s)	88, 219
MalI	GATC	9 cut(s)	37, 55, 96, 228, 393, 477, 744, 986, 1171
MboI	GATC	9 cut(s)	35, 53, 94, 226, 391, 475, 742, 984, 1169
MflI	RGATCY	5 cut(s)	53, 94, 391, 475, 1169
MhlI	GDGCHC	2 cut(s)	11, 50
MluCI	AATT	4 cut(s)	104, 293, 311, 902
MmeI	TCCRAC	1 cut(s)	654
MroI	TCCGGA	1 cut(s)	32
MseI	TTAA	5 cut(s)	351, 576, 774, 855, 923
MspI	CCGG	2 cut(s)	33, 164
Mva1269I	GAATGC	1 cut(s)	1109
MvnI	CGCG	1 cut(s)	1157
MwoI	GCNNNNNNNGC	2 cut(s)	866, 1142
NdeII	GATC	9 cut(s)	35, 53, 94, 226, 391, 475, 742, 984, 1169
NlaIII	CATG	2 cut(s)	629, 952
NlaIV	GGNNCC	2 cut(s)	178, 819
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	629
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	1109
PfeI	GAWTC	1 cut(s)	435
PkrI	GCNGC	2 cut(s)	18, 334
PpuMI	RGGWCCY	2 cut(s)	176, 399
Psp5II	RGGWCCY	2 cut(s)	176, 399
PspN4I	GGNNCC	2 cut(s)	178, 819
PspPI	GGNCC	2 cut(s)	176, 399
PspPPI	RGGWCCY	2 cut(s)	176, 399
PstI	CTGCAG	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	5 cut(s)	53, 94, 391, 475, 1169
RsaI	GTAC	4 cut(s)	120, 170, 245, 846
RsaNI	GTAC	4 cut(s)	119, 169, 244, 845
SaqAI	TTAA	5 cut(s)	351, 576, 774, 855, 923
SatI	GCNGC	2 cut(s)	17, 333
Sau3AI	GATC	9 cut(s)	35, 53, 94, 226, 391, 475, 742, 984, 1169
Sau96I	GGNCC	2 cut(s)	176, 399
SduI	GDGCHC	2 cut(s)	11, 50
SfaNI	GCATC	4 cut(s)	30, 76, 508, 1150
SfcI	CTRYAG	3 cut(s)	285, 471, 723
SinI	GGWCC	2 cut(s)	176, 399
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SpeI	ACTAGT	1 cut(s)	452
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	4 cut(s)	104, 293, 311, 902
SsiI	CCGC	2 cut(s)	298, 1157
SspMI	CTAG	3 cut(s)	51, 453, 638
StyI	CCWWGG	2 cut(s)	172, 526
TaaI	ACNGT	4 cut(s)	206, 672, 765, 1151
TaiI	ACGT	1 cut(s)	961
TaqI	TCGA	7 cut(s)	38, 355, 591, 770, 813, 851, 987
TasI	AATT	4 cut(s)	104, 293, 311, 902
TatI	WGTACW	2 cut(s)	243, 844
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	5 cut(s)	351, 576, 774, 855, 923
Tru9I	TTAA	5 cut(s)	351, 576, 774, 855, 923
TscAI	CASTG	4 cut(s)	211, 675, 886, 1156
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	2 cut(s)	16, 332
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	247, 432, 821
TspGWI	ACGGA	5 cut(s)	26, 48, 60, 76, 1106
TspRI	CASTG	4 cut(s)	211, 675, 886, 1156
VpaK11BI	GGWCC	2 cut(s)	176, 399
XapI	RAATTY	2 cut(s)	293, 311
XceI	RCATGY	1 cut(s)	629
XspI	CTAG	3 cut(s)	51, 453, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.