Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007468

Physical Location & Seq

Genomic Coordinates Forward (+)

29764046 .. 29769315

Gene Structure 5270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023902

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGCTTGCCACGCAGAGAAGTATATCGGGGTCGTCGCAGAGCCCTAGATCGCCGGCGGCATCGCAGCCGTTCCTGTCAGTCTCGGTTACTGATCCTGTCAGATTGGGCAATGGCGTGCAGGCCTACATCTCCTACCGAGTAATCACCAAGACAAACTTCCCAGAGTACCAAGGGCCCGAGAAGATTGTCATTCGACGTTATAGTGATTTTGTTTGGCTGCGAGATCGTCTTTTTGAAAAGTACAAAGGAATCTTTATTCCTCCTATCCCAGAAAAGAGTGCTGTAGAAAAATTCCGTTTCAGTGCTGAGTTCATTGAGATGAGACGCCAAGCATTGGATGTATTTGTTAATCGTATAGCTTCGCATCATGAGCTTCAACAAAGCGAAGATCTTAAAACATTTCTGCAGGCAGATGAAGAGACAATGGAGAGGTTAAGGTTTCATGAGACTGGTATCTTCAAGAAGAAGCCTTCAGATTTGATGCAAATATTCAAGGATGTACAATCCAAAGTGAGTGATGTTGTCCTCGGGAAGGAAAAGCCAGTTGAAGAGTCAAATCCTGAATATGAGAAGTTGAAACACTACATCTTTGAACTTGAAAACCATTTGGCTGAAGCTCAGAAGCATGCGTACCGTCTTGTAAAGAGGCACCGAGAGCTGGGACAGTCTCTATCTGATTTCGGGAAAGCAGCCAAGCTTCTTGGAGCTACTGAAGGTAATGCTCTTGGGAAGGCATTTTCTGAGCTTGGGGCAAAGTCAGAGGCATTATCATTTAAGCTGCAAAAAGAGTTGAAGGCTGATAGTGAGGAAGCGACCAGACGATTTGAAACAATTGTGCGACTGATGAATGAAGAGATTGTCCGCTTTCAGGAACAAAAAACAATAGATATGGGAGTTGCTTTTCACGAATTTGCCAAAGGGCAGGCACGCCTGGCAAATAGTATTGCAGATGCGTGGCGAAGTCTCCTGCCTAAACTTGAAAGTTGTTCACCTGCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006897 GO:0006996 GO:0007034 GO:0007041 GO:0007275 GO:0008104 GO:0008150 GO:0008289 GO:0008333 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009987 GO:0010008 GO:0010252 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022622 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035091 GO:0042592 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

334

Amino Acids

38.11

Weight (kDa)

8.89

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	59 - 137	1.6e-22	PX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06140
fragaria_vesca	FvH4_6g19390 FvH4_6g19390 FvH4_6g19390
malus_domestica	MD12G1029600.v1.1 MD14G1029900.v1.1
prunus_persica	Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1
pyrus_communis	pycom12g02800 pycom14g02770
rosa_chinensis	RchiOBHm_Chr3g0474681
rosa_laevigata	RLG00000023902
rosa_multiflora	Rmu_sc0001126.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406980
rosa_rugosa	Rorug03G0142300.1 Rorug03G0142400 Rorug03G0142500.1 Rorug03G0142600 Rorug03G0142700
rosa_samantha	Rh3AG192900 Rh3BG222800 Rh3CG217600 Rh3DG218700
rosa_wichuraiana	Rw3G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	648
AccB7I	CCANNNNNTGG	1 cut(s)	334
AciI	CCGC	2 cut(s)	56, 862
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	2 cut(s)	290, 908
AcuI	CTGAAG	3 cut(s)	456, 633, 732
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	4 cut(s)	167, 242, 501, 632
AfiI	CCNNNNNNNGG	4 cut(s)	334, 532, 658, 868
AjnI	CCWGG	1 cut(s)	930
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	8 cut(s)	359, 373, 617, 658, 697, 707, 745, 778
AluI	AGCT	8 cut(s)	359, 373, 617, 658, 697, 707, 745, 778
Alw26I	GTCTC	6 cut(s)	85, 316, 413, 440, 672, 968
AlwI	GGATC	1 cut(s)	86
Ama87I	CYCGRG	2 cut(s)	176, 527
AoxI	GGCC	2 cut(s)	120, 173
ApaI	GGGCCC	1 cut(s)	177
ApeKI	GCWGC	4 cut(s)	64, 217, 689, 778
ApoI	RAATTY	2 cut(s)	290, 908
AspS9I	GGNCC	2 cut(s)	173, 174
AsuHPI	GGTGA	2 cut(s)	136, 981
AvaI	CYCGRG	2 cut(s)	176, 527
BaeGI	GKGCMC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	648
BanII	GRGCYC	2 cut(s)	44, 177
BarI	GAAGNNNNNNTAC	2 cut(s)	614, 646
BbvI	GCAGC	4 cut(s)	76, 204, 701, 765
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	932
BcoDI	GTCTC	6 cut(s)	85, 316, 413, 440, 672, 968
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	2 cut(s)	282, 404
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	5 cut(s)	57, 65, 218, 690, 779
BlsI	GCNGC	5 cut(s)	58, 66, 219, 691, 780
Bme1390I	CCNGG	1 cut(s)	932
BmeT110I	CYCGRG	2 cut(s)	176, 527
BmgT120I	GGNCC	2 cut(s)	173, 174
BmiI	GGNNCC	2 cut(s)	175, 650
BmrFI	CCNGG	1 cut(s)	932
BmsI	GCATC	4 cut(s)	68, 373, 471, 940
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	169, 526
Bsc4I	CCNNNNNNNGG	4 cut(s)	334, 532, 658, 868
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	454, 542
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	932
BseDI	CCNNGG	2 cut(s)	169, 526
BseGI	GGATG	2 cut(s)	343, 502
BseLI	CCNNNNNNNGG	4 cut(s)	334, 532, 658, 868
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	3 cut(s)	297, 632, 732
BseNI	ACTGG	2 cut(s)	454, 542
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	4 cut(s)	76, 204, 701, 765
BseYI	CCCAGC	1 cut(s)	658
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	122, 175
BshNI	GGYRCC	1 cut(s)	648
BsiHKCI	CYCGRG	2 cut(s)	176, 527
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	4 cut(s)	334, 532, 658, 868
BsmAI	GTCTC	6 cut(s)	85, 316, 413, 440, 672, 968
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	675
BsnI	GGCC	2 cut(s)	122, 175
BsoBI	CYCGRG	2 cut(s)	176, 527
Bsp120I	GGGCCC	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	44, 177
Bsp1407I	TGTACA	1 cut(s)	499
Bsp143I	GATC	4 cut(s)	47, 91, 223, 388
BspACI	CCGC	2 cut(s)	56, 862
BspANI	GGCC	2 cut(s)	122, 175
BspCNI	CTCAG	3 cut(s)	298, 631, 733
BspHI	TCATGA	2 cut(s)	367, 442
BspLI	GGNNCC	2 cut(s)	175, 650
BspMAI	CTGCAG	1 cut(s)	408
BspPI	GGATC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	648
BsrDI	GCAATG	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	52
BsrGI	TGTACA	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	454, 542
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	169, 526
BssMI	GATC	4 cut(s)	47, 91, 223, 388
BssNI	GRCGYC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	932
Bst4CI	ACNGT	2 cut(s)	635, 666
Bst6I	CTCTTC	3 cut(s)	411, 543, 846
BstACI	GRCGYC	1 cut(s)	325
BstAUI	TGTACA	1 cut(s)	499
BstC8I	GCNNGC	8 cut(s)	6, 54, 116, 120, 408, 627, 924, 928
BstDEI	CTNAG	4 cut(s)	306, 618, 741, 996
BstENI	CCTNNNNNAGG	1 cut(s)	530
BstF5I	GGATG	2 cut(s)	343, 502
BstKTI	GATC	4 cut(s)	50, 94, 226, 391
BstMAI	GTCTC	6 cut(s)	85, 316, 413, 440, 672, 968
BstMBI	GATC	4 cut(s)	47, 91, 223, 388
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 370, 655, 932
BstNI	CCWGG	1 cut(s)	932
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	930
BstSFI	CTRYAG	2 cut(s)	282, 404
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	4 cut(s)	76, 204, 701, 765
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	122, 175
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	343, 502
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	8 cut(s)	6, 54, 116, 120, 408, 627, 924, 928
CciI	TCATGA	2 cut(s)	367, 442
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	173, 174
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	4 cut(s)	166, 241, 500, 631
CviAII	CATG	3 cut(s)	368, 443, 626
CviQI	GTAC	4 cut(s)	166, 241, 500, 631
DdeI	CTNAG	4 cut(s)	306, 618, 741, 996
DpnI	GATC	4 cut(s)	49, 93, 225, 390
DpnII	GATC	4 cut(s)	47, 91, 223, 388
Eam1104I	CTCTTC	3 cut(s)	411, 543, 846
EarI	CTCTTC	3 cut(s)	411, 543, 846
Eco130I	CCWWGG	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	122
Eco24I	GRGCYC	2 cut(s)	44, 177
Eco57I	CTGAAG	3 cut(s)	456, 633, 732
Eco88I	CYCGRG	2 cut(s)	176, 527
EcoNI	CCTNNNNNAGG	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	930
EcoT14I	CCWWGG	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	44, 177
ErhI	CCWWGG	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	3 cut(s)	371, 446, 629
FaiI	YATR	8 cut(s)	23, 201, 356, 369, 444, 567, 627, 890
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	3 cut(s)	367, 442, 625
Fnu4HI	GCNGC	5 cut(s)	57, 65, 218, 690, 779
FokI	GGATG	2 cut(s)	350, 509
FriOI	GRGCYC	2 cut(s)	44, 177
Fsp4HI	GCNGC	5 cut(s)	57, 65, 218, 690, 779
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	5 cut(s)	57, 65, 218, 690, 779
GsaI	CCCAGC	1 cut(s)	662
HaeIII	GGCC	2 cut(s)	122, 175
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	333
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	371, 446, 629
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	2 cut(s)	249, 551
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	2 cut(s)	136, 981
Hpy166II	GTNNAC	1 cut(s)	989
Hpy188I	TCNGA	6 cut(s)	101, 475, 621, 676, 742, 760
Hpy188III	TCNNGA	8 cut(s)	368, 443, 460, 529, 560, 682, 869, 905
Hpy8I	GTNNAC	1 cut(s)	989
Hpy99I	CGWCG	2 cut(s)	37, 198
HpyAV	CCTTC	5 cut(s)	480, 526, 707, 724, 787
HpyCH4III	ACNGT	2 cut(s)	635, 666
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	5 cut(s)	118, 406, 484, 781, 947
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 370, 655, 932
HpyF3I	CTNAG	4 cut(s)	306, 618, 741, 996
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	3 cut(s)	371, 446, 629
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	47, 91, 223, 388
LmnI	GCTCC	1 cut(s)	704
Lsp1109I	GCAGC	4 cut(s)	76, 204, 701, 765
LweI	GCATC	4 cut(s)	68, 373, 471, 940
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	49, 93, 225, 390
MboI	GATC	4 cut(s)	47, 91, 223, 388
MboII	GAAGA	7 cut(s)	193, 398, 428, 448, 475, 560, 863
MfeI	CAATTG	1 cut(s)	831
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	44, 177
MluCI	AATT	3 cut(s)	290, 831, 908
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	6 cut(s)	270, 423, 536, 639, 754, 799
MreI	CGCCGGCG	1 cut(s)	52
MroNI	GCCGGC	1 cut(s)	52
MseI	TTAA	4 cut(s)	348, 393, 434, 774
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	932
MunI	CAATTG	1 cut(s)	831
MvaI	CCWGG	1 cut(s)	932
MwoI	GCNNNNNNNGC	4 cut(s)	10, 370, 655, 932
NaeI	GCCGGC	1 cut(s)	54
NdeII	GATC	4 cut(s)	47, 91, 223, 388
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	3 cut(s)	371, 446, 629
NlaIV	GGNNCC	2 cut(s)	175, 650
NspI	RCATGY	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	629
PagI	TCATGA	2 cut(s)	367, 442
PceI	AGGCCT	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	249
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	5 cut(s)	58, 66, 219, 691, 780
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	930
PspFI	CCCAGC	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	930
PspN4I	GGNNCC	2 cut(s)	175, 650
PspOMI	GGGCCC	1 cut(s)	173
PspPI	GGNCC	2 cut(s)	173, 174
PstI	CTGCAG	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	4 cut(s)	167, 242, 501, 632
RsaNI	GTAC	4 cut(s)	166, 241, 500, 631
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	4 cut(s)	348, 393, 434, 774
SatI	GCNGC	5 cut(s)	57, 65, 218, 690, 779
Sau3AI	GATC	4 cut(s)	47, 91, 223, 388
Sau96I	GGNCC	2 cut(s)	173, 174
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	932
SduI	GDGCHC	2 cut(s)	44, 177
SfaNI	GCATC	4 cut(s)	68, 373, 471, 940
SfcI	CTRYAG	2 cut(s)	282, 404
SgrAI	CRCCGGYG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	3 cut(s)	290, 831, 908
SseBI	AGGCCT	1 cut(s)	122
SsiI	CCGC	2 cut(s)	56, 862
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	930
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	635, 666
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	193
TasI	AATT	3 cut(s)	290, 831, 908
TatI	WGTACW	2 cut(s)	240, 499
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	4 cut(s)	348, 393, 434, 774
Tru9I	TTAA	4 cut(s)	348, 393, 434, 774
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	4 cut(s)	64, 217, 689, 778
TspDTI	ATGAA	5 cut(s)	301, 429, 431, 860, 864
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	307
Van91I	CCANNNNNTGG	1 cut(s)	334
XagI	CCTNNNNNAGG	1 cut(s)	530
XapI	RAATTY	2 cut(s)	290, 908
XceI	RCATGY	1 cut(s)	629
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.