Rmu_sc0001126.1_g000005

Sorting nexin

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001126.1
Physical Location & Seq
Forward (+)
17251 .. 22513
5263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001126.1_g000005.1.cds

Sequence Viewer

Length: 1212 bp
atgcttgccacgcagagaagtatatcggggtcgtcgcagagccctagatcgccggcggcatcgcagccgttcctgtcagtctcggttactgatcctgtcaaattgggcaatggcgtgcaggcctacatctcctaccgagtaatcaccaagacaaacttcccagagtaccaagggcccgagaagattgtcattcgacgttatagtgattttgtttggctgcgagatcgtctttttgaaaagtacaaaggaatctttattcctcctatcccagaaaagagtgctgtagaaaaattccgtttcagtgctgagttcattgagatgagacgccaagcattggatgtatttgttaatcgtatagcttcgcatcatgagcttcaacaaagcgaagatcttagaacatttctgcaggcagatgaagagacaatggagaggttaaggtttcatgagactggtatcttcaagaagaagccttcagatttgatgcaaatattcaaggatgtacaatccaaagtgagtgatgttgtcctcgggaaggaaaagccagtcgaagagtcaaatcctgaatatgagaagttgaaacactacatctttgaacttgaaaaccatttggccgaagctcagaagcatgcgtaccgtcttgtaaagaggcaccgagagctgggacagtctctatctgatttcgggaaagcagccaagcttcttggagcttgtgaaggtaatgctcttgggaaggcgttttctgagcttggggcaaagtcagaggcattatcatttaagctgcaaaaagaggcccaccaactgttgatgaattttgaagaacccttgaaagattatgttcgggctgttcaatctattaaggccaccatagctgagagagcaaatgccttcaggcaacagtgtgaacttgctgaaacaatgaagttgaaggagataaatcttgacaaactcatgttaaccagatcagacaaggtgggagaagctgagctcgagtacaaggagttgaaggctgatagtgaggaagcgaccagacgatttgaaacaattgtgcgactgatgaatgaagagattgtccgctttcaggaacaaaaaacaatagatatgggagttgcttttcacgaatttgccaaagggcaggcacgcctggcaaatagtattgcagatgcgtggcgaagtctcctgcctaaactcgaaagttgttcacctgctcagtga

Protein Analysis

403

Amino Acids

46.23

Weight (kDa)

8.2

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 648
AccB7I CCANNNNNTGG 1 cut(s) 334
AciI CCGC 2 cut(s) 56, 1072
AclWI GGATC 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 609
AcsI RAATTY 3 cut(s) 290, 808, 1118
AcuI CTGAAG 2 cut(s) 456, 871
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 5 cut(s) 167, 242, 501, 632, 992
AfiI CCNNNNNNNGG 4 cut(s) 334, 532, 658, 1078
AjnI CCWGG 1 cut(s) 1140
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
Alw21I GWGCWC 1 cut(s) 987
Alw26I GTCTC 6 cut(s) 85, 316, 413, 440, 672, 1178
AlwI GGATC 1 cut(s) 86
Ama87I CYCGRG 3 cut(s) 176, 527, 986
AoxI GGCC 5 cut(s) 120, 173, 609, 789, 858
ApaI GGGCCC 1 cut(s) 177
ApeKI GCWGC 4 cut(s) 64, 217, 689, 778
ApoI RAATTY 3 cut(s) 290, 808, 1118
AspS9I GGNCC 3 cut(s) 173, 174, 790
AsuHPI GGTGA 2 cut(s) 136, 1191
AvaI CYCGRG 3 cut(s) 176, 527, 986
BaeGI GKGCMC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 648
BanII GRGCYC 3 cut(s) 44, 177, 987
BarI GAAGNNNNNNTAC 2 cut(s) 614, 646
Bbv12I GWGCWC 1 cut(s) 987
BbvI GCAGC 4 cut(s) 76, 204, 701, 765
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 1142
BcoDI GTCTC 6 cut(s) 85, 316, 413, 440, 672, 1178
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 2 cut(s) 282, 404
BglII AGATCT 1 cut(s) 388
BisI GCNGC 5 cut(s) 57, 65, 218, 690, 779
BlpI GCTNAGC 1 cut(s) 981
BlsI GCNGC 5 cut(s) 58, 66, 219, 691, 780
Bme1390I CCNGG 1 cut(s) 1142
BmeT110I CYCGRG 3 cut(s) 176, 527, 986
BmgT120I GGNCC 3 cut(s) 173, 174, 790
BmiI GGNNCC 2 cut(s) 175, 650
BmrFI CCNGG 1 cut(s) 1142
BmsI GCATC 4 cut(s) 68, 373, 471, 1150
Bpu1102I GCTNAGC 1 cut(s) 981
BsaHI GRCGYC 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 169, 526
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 532, 658, 1078
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 454, 542
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 1142
BseDI CCNNGG 2 cut(s) 169, 526
BseGI GGATG 2 cut(s) 343, 502
BseLI CCNNNNNNNGG 4 cut(s) 334, 532, 658, 1078
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 5 cut(s) 297, 632, 732, 861, 972
BseNI ACTGG 2 cut(s) 454, 542
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 4 cut(s) 76, 204, 701, 765
BseYI CCCAGC 1 cut(s) 658
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 5 cut(s) 122, 175, 611, 791, 860
BshNI GGYRCC 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 987
BsiHKCI CYCGRG 3 cut(s) 176, 527, 986
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 675
BslI CCNNNNNNNGG 4 cut(s) 334, 532, 658, 1078
BsmAI GTCTC 6 cut(s) 85, 316, 413, 440, 672, 1178
BsmBI CGTCTC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 675
BsnI GGCC 5 cut(s) 122, 175, 611, 791, 860
BsoBI CYCGRG 3 cut(s) 176, 527, 986
Bsp120I GGGCCC 1 cut(s) 173
Bsp1286I GDGCHC 3 cut(s) 44, 177, 987
Bsp1407I TGTACA 1 cut(s) 499
Bsp143I GATC 5 cut(s) 47, 91, 223, 388, 959
Bsp1720I GCTNAGC 1 cut(s) 981
BspACI CCGC 2 cut(s) 56, 1072
BspANI GGCC 5 cut(s) 122, 175, 611, 791, 860
BspCNI CTCAG 5 cut(s) 298, 631, 733, 862, 973
BspHI TCATGA 2 cut(s) 367, 442
BspLI GGNNCC 2 cut(s) 175, 650
BspMAI CTGCAG 1 cut(s) 408
BspPI GGATC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 52
BsrGI TGTACA 1 cut(s) 499
BsrI ACTGG 2 cut(s) 454, 542
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 169, 526
BssMI GATC 5 cut(s) 47, 91, 223, 388, 959
BssNI GRCGYC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 1142
Bst4CI ACNGT 4 cut(s) 635, 666, 801, 897
Bst6I CTCTTC 3 cut(s) 411, 543, 1056
BstACI GRCGYC 1 cut(s) 325
BstAUI TGTACA 1 cut(s) 499
BstC8I GCNNGC 8 cut(s) 6, 54, 116, 120, 408, 627, 1134, 1138
BstDEI CTNAG 7 cut(s) 306, 392, 618, 741, 870, 981, 1206
BstENI CCTNNNNNAGG 1 cut(s) 530
BstF5I GGATG 2 cut(s) 343, 502
BstKTI GATC 5 cut(s) 50, 94, 226, 391, 962
BstMAI GTCTC 6 cut(s) 85, 316, 413, 440, 672, 1178
BstMBI GATC 5 cut(s) 47, 91, 223, 388, 959
BstMWI GCNNNNNNNGC 6 cut(s) 10, 370, 655, 866, 875, 1142
BstNI CCWGG 1 cut(s) 1142
BstNSI RCATGY 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 1140
BstSFI CTRYAG 2 cut(s) 282, 404
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 4 cut(s) 76, 204, 701, 765
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 5 cut(s) 122, 175, 611, 791, 860
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 343, 502
BtsIMutI CAGTG 2 cut(s) 307, 902
Cac8I GCNNGC 8 cut(s) 6, 54, 116, 120, 408, 627, 1134, 1138
CciI TCATGA 2 cut(s) 367, 442
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 173, 174, 790
CseI GACGC 1 cut(s) 333
Csp6I GTAC 5 cut(s) 166, 241, 500, 631, 991
CviAII CATG 4 cut(s) 368, 443, 626, 949
CviQI GTAC 5 cut(s) 166, 241, 500, 631, 991
DdeI CTNAG 7 cut(s) 306, 392, 618, 741, 870, 981, 1206
DpnI GATC 5 cut(s) 49, 93, 225, 390, 961
DpnII GATC 5 cut(s) 47, 91, 223, 388, 959
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 3 cut(s) 411, 543, 1056
EarI CTCTTC 3 cut(s) 411, 543, 1056
Ecl136II GAGCTC 1 cut(s) 985
Eco130I CCWWGG 1 cut(s) 169
Eco147I AGGCCT 1 cut(s) 122
Eco24I GRGCYC 3 cut(s) 44, 177, 987
Eco53kI GAGCTC 1 cut(s) 985
Eco57I CTGAAG 2 cut(s) 456, 871
Eco88I CYCGRG 3 cut(s) 176, 527, 986
EcoICRI GAGCTC 1 cut(s) 985
EcoNI CCTNNNNNAGG 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 1140
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 3 cut(s) 44, 177, 987
ErhI CCWWGG 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 4 cut(s) 371, 446, 629, 952
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 1 cut(s) 675
FatI CATG 4 cut(s) 367, 442, 625, 948
Fnu4HI GCNGC 5 cut(s) 57, 65, 218, 690, 779
FokI GGATG 2 cut(s) 350, 509
FriOI GRGCYC 3 cut(s) 44, 177, 987
Fsp4HI GCNGC 5 cut(s) 57, 65, 218, 690, 779
FspBI CTAG 1 cut(s) 45
GluI GCNGC 5 cut(s) 57, 65, 218, 690, 779
GsaI CCCAGC 1 cut(s) 662
HaeIII GGCC 5 cut(s) 122, 175, 611, 791, 860
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 4 cut(s) 371, 446, 629, 952
HincII GTYRAC 1 cut(s) 954
HindII GTYRAC 1 cut(s) 954
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 2 cut(s) 249, 551
HpaI GTTAAC 1 cut(s) 954
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 136, 1191
Hpy166II GTNNAC 3 cut(s) 902, 954, 1199
Hpy188I TCNGA 6 cut(s) 475, 621, 676, 742, 760, 964
Hpy188III TCNNGA 9 cut(s) 368, 443, 460, 529, 560, 682, 938, 1079, 1115
Hpy8I GTNNAC 3 cut(s) 902, 954, 1199
Hpy99I CGWCG 2 cut(s) 37, 198
HpyAV CCTTC 7 cut(s) 480, 526, 707, 724, 895, 919, 997
HpyCH4III ACNGT 4 cut(s) 635, 666, 801, 897
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 5 cut(s) 118, 406, 484, 781, 1157
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 370, 655, 866, 875, 1142
HpyF3I CTNAG 7 cut(s) 306, 392, 618, 741, 870, 981, 1206
HpySE526I ACGT 1 cut(s) 196
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 4 cut(s) 371, 446, 629, 952
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
KspAI GTTAAC 1 cut(s) 954
Kzo9I GATC 5 cut(s) 47, 91, 223, 388, 959
LmnI GCTCC 1 cut(s) 704
Lsp1109I GCAGC 4 cut(s) 76, 204, 701, 765
LweI GCATC 4 cut(s) 68, 373, 471, 1150
MaeI CTAG 1 cut(s) 45
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 85
MalI GATC 5 cut(s) 49, 93, 225, 390, 961
MboI GATC 5 cut(s) 47, 91, 223, 388, 959
MboII GAAGA 8 cut(s) 193, 398, 428, 448, 475, 560, 827, 1073
MfeI CAATTG 1 cut(s) 1041
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 3 cut(s) 44, 177, 987
MluCI AATT 5 cut(s) 101, 290, 808, 1041, 1118
MlyI GAGTC 1 cut(s) 560
MnlI CCTC 7 cut(s) 270, 423, 536, 639, 754, 781, 1009
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 5 cut(s) 348, 434, 774, 855, 953
MslI CAYNNNNRTG 1 cut(s) 317
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 1142
MunI CAATTG 1 cut(s) 1041
MvaI CCWGG 1 cut(s) 1142
MwoI GCNNNNNNNGC 6 cut(s) 10, 370, 655, 866, 875, 1142
NaeI GCCGGC 1 cut(s) 54
NdeII GATC 5 cut(s) 47, 91, 223, 388, 959
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 4 cut(s) 371, 446, 629, 952
NlaIV GGNNCC 2 cut(s) 175, 650
NspI RCATGY 1 cut(s) 629
PaeI GCATGC 1 cut(s) 629
PaeR7I CTCGAG 1 cut(s) 986
PagI TCATGA 2 cut(s) 367, 442
PceI AGGCCT 1 cut(s) 122
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 5 cut(s) 58, 66, 219, 691, 780
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
Psp124BI GAGCTC 1 cut(s) 987
Psp6I CCWGG 1 cut(s) 1140
PspFI CCCAGC 1 cut(s) 658
PspGI CCWGG 1 cut(s) 1140
PspN4I GGNNCC 2 cut(s) 175, 650
PspOMI GGGCCC 1 cut(s) 173
PspPI GGNCC 3 cut(s) 173, 174, 790
PspXI VCTCGAGB 1 cut(s) 986
PstI CTGCAG 1 cut(s) 408
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 5 cut(s) 167, 242, 501, 632, 992
RsaNI GTAC 5 cut(s) 166, 241, 500, 631, 991
RseI CAYNNNNRTG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 987
SaqAI TTAA 5 cut(s) 348, 434, 774, 855, 953
SatI GCNGC 5 cut(s) 57, 65, 218, 690, 779
Sau3AI GATC 5 cut(s) 47, 91, 223, 388, 959
Sau96I GGNCC 3 cut(s) 173, 174, 790
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 1 cut(s) 1142
SduI GDGCHC 3 cut(s) 44, 177, 987
SfaNI GCATC 4 cut(s) 68, 373, 471, 1150
SfcI CTRYAG 2 cut(s) 282, 404
Sfr274I CTCGAG 1 cut(s) 986
SgrAI CRCCGGYG 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 986
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 986
SmoI CTYRAG 1 cut(s) 986
SphI GCATGC 1 cut(s) 629
Sse9I AATT 5 cut(s) 101, 290, 808, 1041, 1118
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 2 cut(s) 56, 1072
SspI AATATT 1 cut(s) 489
SspMI CTAG 1 cut(s) 45
SstI GAGCTC 1 cut(s) 987
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 1140
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 4 cut(s) 635, 666, 801, 897
TaiI ACGT 1 cut(s) 199
TaqI TCGA 4 cut(s) 193, 546, 987, 1188
TasI AATT 5 cut(s) 101, 290, 808, 1041, 1118
TatI WGTACW 3 cut(s) 240, 499, 990
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 5 cut(s) 348, 434, 774, 855, 953
Tru9I TTAA 5 cut(s) 348, 434, 774, 855, 953
TscAI CASTG 2 cut(s) 307, 902
TseI GCWGC 4 cut(s) 64, 217, 689, 778
TspDTI ATGAA 7 cut(s) 301, 429, 431, 821, 932, 1070, 1074
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 2 cut(s) 307, 902
Van91I CCANNNNNTGG 1 cut(s) 334
XagI CCTNNNNNAGG 1 cut(s) 530
XapI RAATTY 3 cut(s) 290, 808, 1118
XceI RCATGY 1 cut(s) 629
XhoI CTCGAG 1 cut(s) 986
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.