Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007468

Physical Location & Seq

Genomic Coordinates Reverse (-)

11703941 .. 11704881

Gene Structure 941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0142600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAGAGCTCACCGGCCATCCTAAACAAACCACCCCCGCCCTTCCCGGCGCCACCGCGCAGTGTCGACTTCTCCGCCCTCGAGTTCATCCTCGGCCTCCTCGCCGTCATCACCGTCCCCGCCTTAATCTACGCTGTCTTCTTCACCGTCAAGTGTCCTCCCAACCTTTTCCGCCATCGACCACGCCGGAGCTCCACCACCGCCCCCGCCGACCCGGCCCATGCCCGGCCCGAGGTGATTTCCGACCTCAAATACCTGAAGGACGCCCACGTCAAGGAAATCGGGACCGAGTGCCCGGTTTGCTTATCGGTCTTTGCCGACGGCGAAGAAGTAAGGCAGCTCAGTGTGTGCAAGCACTCGTTTCATGGCACGTGCATTAACATGTGGCTCAAGGATCACTCGAATTGCCCGATATGCCGCGCTAACATCGCCCTCGATCGGAGTAGTAGTAACAGCAGAACGGCGGCGTCCGGTAGAGAATATCGGGATGATCTGCAACAAGGTTTGCCCGATGCATCCGCCATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006897 GO:0006996 GO:0007034 GO:0007041 GO:0007275 GO:0008104 GO:0008150 GO:0008289 GO:0008333 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009987 GO:0010008 GO:0010252 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022622 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035091 GO:0042592 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

176

Amino Acids

19.3

Weight (kDa)

7.63

Isoelectric Point (pI)

65.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	97 - 140	6.7e-13	Ring finger domain
zf-C3HC4_2	PF13923	97 - 139	2.3e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	97 - 126	1.5e-08	RING-like zinc finger
zf-rbx1	PF12678	98 - 140	1.1e-07	RING-H2 zinc finger domain
zf-C3HC4	PF00097	98 - 139	6.5e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06140
fragaria_vesca	FvH4_6g19390 FvH4_6g19390 FvH4_6g19390
malus_domestica	MD12G1029600.v1.1 MD14G1029900.v1.1
prunus_persica	Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1
pyrus_communis	pycom12g02800 pycom14g02770
rosa_chinensis	RchiOBHm_Chr3g0474681
rosa_laevigata	RLG00000023902
rosa_multiflora	Rmu_sc0001126.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406980
rosa_rugosa	Rorug03G0142300.1 Rorug03G0142400 Rorug03G0142500.1 Rorug03G0142600 Rorug03G0142700
rosa_samantha	Rh3AG192900 Rh3BG222800 Rh3CG217600 Rh3DG218700
rosa_wichuraiana	Rw3G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	2 cut(s)	58, 420
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	278
AcvI	CACGTG	1 cut(s)	372
AcyI	GRCGYC	3 cut(s)	50, 264, 467
AfiI	CCNNNNNNNGG	4 cut(s)	225, 232, 274, 438
AflIII	ACRYGT	1 cut(s)	381
AjiI	CACGTC	1 cut(s)	271
AluBI	AGCT	3 cut(s)	9, 192, 340
AluI	AGCT	3 cut(s)	9, 192, 340
Alw21I	GWGCWC	2 cut(s)	11, 194
AlwI	GGATC	1 cut(s)	402
Ama87I	CYCGRG	2 cut(s)	80, 230
AoxI	GGCC	4 cut(s)	15, 94, 216, 227
ApeKI	GCWGC	1 cut(s)	337
AspLEI	GCGC	3 cut(s)	52, 60, 422
AspS9I	GGNCC	3 cut(s)	217, 228, 285
AsuC2I	CCSGG	4 cut(s)	47, 215, 226, 296
AsuHPI	GGTGA	4 cut(s)	3, 103, 136, 247
AvaI	CYCGRG	2 cut(s)	80, 230
AvaII	GGWCC	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	2 cut(s)	11, 194
BbrPI	CACGTG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	2 cut(s)	11, 194
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	2 cut(s)	26, 183
BceAI	ACGGC	3 cut(s)	89, 337, 477
BcnI	CCSGG	4 cut(s)	47, 215, 226, 296
BfoI	RGCGCY	1 cut(s)	53
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	3 cut(s)	338, 418, 465
BlsI	GCNGC	3 cut(s)	339, 419, 466
Bme1390I	CCNGG	4 cut(s)	47, 215, 226, 296
Bme18I	GGWCC	1 cut(s)	285
BmeT110I	CYCGRG	2 cut(s)	80, 230
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	3 cut(s)	217, 228, 285
BmiI	GGNNCC	2 cut(s)	51, 286
BmrFI	CCNGG	4 cut(s)	47, 215, 226, 296
BmsI	GCATC	2 cut(s)	502, 524
BpiI	GAAGAC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	4 cut(s)	47, 215, 226, 296
BsaAI	YACGTR	1 cut(s)	372
BsaHI	GRCGYC	3 cut(s)	50, 264, 467
BsaJI	CCNNGG	3 cut(s)	91, 231, 522
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	4 cut(s)	225, 232, 274, 438
Bse118I	RCCGGY	1 cut(s)	13
BseDI	CCNNGG	3 cut(s)	91, 231, 522
BseGI	GGATG	4 cut(s)	18, 87, 493, 515
BseLI	CCNNNNNNNGG	4 cut(s)	225, 232, 274, 438
BseMII	CTCAG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	349
Bsh1236I	CGCG	2 cut(s)	58, 420
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	4 cut(s)	17, 96, 218, 229
BshNI	GGYRCC	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	11, 194
BsiHKCI	CYCGRG	2 cut(s)	80, 230
BsiSI	CCGG	7 cut(s)	14, 47, 187, 215, 226, 296, 471
BslFI	GGGAC	2 cut(s)	101, 298
BslI	CCNNNNNNNGG	4 cut(s)	225, 232, 274, 438
BsmFI	GGGAC	2 cut(s)	101, 298
BsnI	GGCC	4 cut(s)	17, 96, 218, 229
BsoBI	CYCGRG	2 cut(s)	80, 230
Bsp1286I	GDGCHC	3 cut(s)	11, 194, 296
Bsp143I	GATC	3 cut(s)	394, 436, 490
Bsp19I	CCATGG	1 cut(s)	522
BspANI	GGCC	4 cut(s)	17, 96, 218, 229
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	2 cut(s)	58, 420
BspLI	GGNNCC	2 cut(s)	51, 286
BspPI	GGATC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	91, 231, 522
BssMI	GATC	3 cut(s)	394, 436, 490
BssNI	GRCGYC	3 cut(s)	50, 264, 467
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	2 cut(s)	115, 148
BstACI	GRCGYC	3 cut(s)	50, 264, 467
BstBAI	YACGTR	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	341
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	4 cut(s)	18, 87, 493, 515
BstFNI	CGCG	2 cut(s)	58, 420
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	3 cut(s)	52, 60, 422
BstKTI	GATC	3 cut(s)	397, 439, 493
BstMBI	GATC	3 cut(s)	394, 436, 490
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 300, 414, 428
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	4 cut(s)	45, 213, 224, 294
BstSLI	GKGCMC	1 cut(s)	296
BstUI	CGCG	2 cut(s)	58, 420
BstV1I	GCAGC	1 cut(s)	349
BstV2I	GAAGAC	1 cut(s)	130
BsuRI	GGCC	4 cut(s)	17, 96, 218, 229
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	412
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	4 cut(s)	18, 87, 493, 515
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	67, 349
Cac8I	GCNNGC	1 cut(s)	353
CfoI	GCGC	3 cut(s)	52, 60, 422
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	217, 228, 285
CseI	GACGC	2 cut(s)	272, 456
CviAII	CATG	4 cut(s)	221, 365, 382, 523
CviJI	RGCY	8 cut(s)	9, 17, 96, 192, 218, 229, 340, 388
CviKI_1	RGCY	8 cut(s)	9, 17, 96, 192, 218, 229, 340, 388
DdeI	CTNAG	1 cut(s)	341
DinI	GGCGCC	1 cut(s)	51
DpnI	GATC	3 cut(s)	396, 438, 492
DpnII	GATC	3 cut(s)	394, 436, 490
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	15
EciI	GGCGGA	3 cut(s)	64, 161, 508
Ecl136II	GAGCTC	2 cut(s)	9, 192
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	11, 194
Eco47I	GGWCC	1 cut(s)	285
Eco53kI	GAGCTC	2 cut(s)	9, 192
Eco57I	CTGAAG	1 cut(s)	278
Eco72I	CACGTG	1 cut(s)	372
Eco88I	CYCGRG	2 cut(s)	80, 230
EcoICRI	GAGCTC	2 cut(s)	9, 192
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	517
EcoT38I	GRGCYC	2 cut(s)	11, 194
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	4 cut(s)	224, 368, 385, 526
FaiI	YATR	5 cut(s)	222, 366, 383, 415, 524
FaqI	GGGAC	2 cut(s)	101, 298
FatI	CATG	4 cut(s)	220, 364, 381, 522
FauI	CCCGC	3 cut(s)	45, 127, 214
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	338, 418, 465
FokI	GGATG	4 cut(s)	5, 74, 500, 502
FriOI	GRGCYC	2 cut(s)	11, 194
Fsp4HI	GCNGC	3 cut(s)	338, 418, 465
GlaI	GCGC	3 cut(s)	51, 59, 421
GluI	GCNGC	3 cut(s)	338, 418, 465
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	4 cut(s)	17, 96, 218, 229
HapII	CCGG	7 cut(s)	14, 47, 187, 215, 226, 296, 471
HgaI	GACGC	2 cut(s)	272, 456
HhaI	GCGC	3 cut(s)	52, 60, 422
Hin1I	GRCGYC	3 cut(s)	50, 264, 467
Hin1II	CATG	4 cut(s)	224, 368, 385, 526
Hin6I	GCGC	3 cut(s)	50, 58, 420
HinP1I	GCGC	3 cut(s)	50, 58, 420
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HpaII	CCGG	7 cut(s)	14, 47, 187, 215, 226, 296, 471
HphI	GGTGA	4 cut(s)	3, 103, 136, 247
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	244, 441
Hpy188III	TCNNGA	2 cut(s)	283, 485
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	52, 253
HpyCH4III	ACNGT	2 cut(s)	115, 148
HpyCH4IV	ACGT	2 cut(s)	270, 371
HpyCH4V	TGCA	4 cut(s)	351, 375, 496, 515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 300, 414, 428
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	2 cut(s)	270, 371
Hsp92I	GRCGYC	3 cut(s)	50, 264, 467
Hsp92II	CATG	4 cut(s)	224, 368, 385, 526
HspAI	GCGC	3 cut(s)	50, 58, 420
KasI	GGCGCC	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	394, 436, 490
LmnI	GCTCC	2 cut(s)	189, 197
LpnPI	CCDG	8 cut(s)	27, 60, 200, 228, 239, 269, 309, 484
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	2 cut(s)	502, 524
MaeII	ACGT	2 cut(s)	270, 371
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	3 cut(s)	396, 438, 492
MboI	GATC	3 cut(s)	394, 436, 490
MboII	GAAGA	3 cut(s)	130, 133, 338
MhlI	GDGCHC	3 cut(s)	11, 194, 296
MluCI	AATT	1 cut(s)	403
Mly113I	GGCGCC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	8 cut(s)	89, 101, 107, 110, 168, 226, 257, 443
Mph1103I	ATGCAT	1 cut(s)	517
MseI	TTAA	2 cut(s)	125, 378
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	7 cut(s)	14, 47, 187, 215, 226, 296, 471
MspR9I	CCNGG	4 cut(s)	47, 215, 226, 296
MvnI	CGCG	2 cut(s)	58, 420
MwoI	GCNNNNNNNGC	4 cut(s)	215, 300, 414, 428
NarI	GGCGCC	1 cut(s)	50
NciI	CCSGG	4 cut(s)	47, 215, 226, 296
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	3 cut(s)	394, 436, 490
NlaIII	CATG	4 cut(s)	224, 368, 385, 526
NlaIV	GGNNCC	2 cut(s)	51, 286
NmeAIII	GCCGAG	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	1 cut(s)	385
PaeR7I	CTCGAG	1 cut(s)	80
PciI	ACATGT	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	339, 419, 466
Ple19I	CGATCG	1 cut(s)	439
PluTI	GGCGCC	1 cut(s)	53
PmaCI	CACGTG	1 cut(s)	372
PmlI	CACGTG	1 cut(s)	372
Ppu21I	YACGTR	1 cut(s)	372
PscI	ACATGT	1 cut(s)	381
Psp124BI	GAGCTC	2 cut(s)	11, 194
PspCI	CACGTG	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	51, 286
PspPI	GGNCC	3 cut(s)	217, 228, 285
PspXI	VCTCGAGB	1 cut(s)	80
PvuI	CGATCG	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	2 cut(s)	11, 194
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	125, 378
SatI	GCNGC	3 cut(s)	338, 418, 465
Sau3AI	GATC	3 cut(s)	394, 436, 490
Sau96I	GGNCC	3 cut(s)	217, 228, 285
ScrFI	CCNGG	4 cut(s)	47, 215, 226, 296
SduI	GDGCHC	3 cut(s)	11, 194, 296
SfaNI	GCATC	2 cut(s)	502, 524
SfoI	GGCGCC	1 cut(s)	51
Sfr274I	CTCGAG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	285
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	80, 389
SmoI	CTYRAG	2 cut(s)	80, 389
Sse9I	AATT	1 cut(s)	403
SspDI	GGCGCC	1 cut(s)	49
SstI	GAGCTC	2 cut(s)	11, 194
StyD4I	CCNGG	4 cut(s)	45, 213, 224, 294
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	115, 148
TaiI	ACGT	2 cut(s)	273, 374
TaqI	TCGA	5 cut(s)	66, 81, 178, 401, 435
TaqII	GACCGA	2 cut(s)	298, 302
TasI	AATT	1 cut(s)	403
TauI	GCSGC	2 cut(s)	420, 467
Tru1I	TTAA	2 cut(s)	125, 378
Tru9I	TTAA	2 cut(s)	125, 378
TscAI	CASTG	2 cut(s)	67, 349
TseI	GCWGC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	76, 353
TspRI	CASTG	2 cut(s)	67, 349
VpaK11BI	GGWCC	1 cut(s)	285
XceI	RCATGY	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	66
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.