Sorting nexin
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06140 |
| fragaria_vesca | FvH4_6g19390 FvH4_6g19390 FvH4_6g19390 |
| malus_domestica | MD12G1029600.v1.1 MD14G1029900.v1.1 |
| prunus_persica | Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 |
| pyrus_communis | pycom12g02800 pycom14g02770 |
| rosa_chinensis | RchiOBHm_Chr3g0474681 |
| rosa_laevigata | RLG00000023902 |
| rosa_multiflora | Rmu_sc0001126.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00406980 |
| rosa_rugosa | Rorug03G0142300.1 Rorug03G0142400 Rorug03G0142500.1 Rorug03G0142600 Rorug03G0142700 |
| rosa_samantha | Rh3AG192900 Rh3BG222800 Rh3CG217600 Rh3DG218700 |
| rosa_wichuraiana | Rw3G017590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 648 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 334 |
| AciI | CCGC | 2 cut(s) | 56, 1072 |
| AclWI | GGATC | 1 cut(s) | 86 |
| AcoI | YGGCCR | 1 cut(s) | 609 |
| AcsI | RAATTY | 3 cut(s) | 290, 808, 1118 |
| AcuI | CTGAAG | 2 cut(s) | 456, 871 |
| AcyI | GRCGYC | 1 cut(s) | 325 |
| AfaI | GTAC | 5 cut(s) | 167, 242, 501, 632, 992 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 334, 532, 658, 1078 |
| AjnI | CCWGG | 1 cut(s) | 1140 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 140, 172 |
| Alw21I | GWGCWC | 1 cut(s) | 987 |
| Alw26I | GTCTC | 6 cut(s) | 85, 316, 413, 440, 672, 1178 |
| AlwI | GGATC | 1 cut(s) | 86 |
| Ama87I | CYCGRG | 3 cut(s) | 176, 527, 986 |
| AoxI | GGCC | 5 cut(s) | 120, 173, 609, 789, 858 |
| ApaI | GGGCCC | 1 cut(s) | 177 |
| ApeKI | GCWGC | 4 cut(s) | 64, 217, 689, 778 |
| ApoI | RAATTY | 3 cut(s) | 290, 808, 1118 |
| AspS9I | GGNCC | 3 cut(s) | 173, 174, 790 |
| AsuHPI | GGTGA | 2 cut(s) | 136, 1191 |
| AvaI | CYCGRG | 3 cut(s) | 176, 527, 986 |
| BaeGI | GKGCMC | 1 cut(s) | 177 |
| BanI | GGYRCC | 1 cut(s) | 648 |
| BanII | GRGCYC | 3 cut(s) | 44, 177, 987 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 614, 646 |
| Bbv12I | GWGCWC | 1 cut(s) | 987 |
| BbvI | GCAGC | 4 cut(s) | 76, 204, 701, 765 |
| BceAI | ACGGC | 1 cut(s) | 52 |
| BciT130I | CCWGG | 1 cut(s) | 1142 |
| BcoDI | GTCTC | 6 cut(s) | 85, 316, 413, 440, 672, 1178 |
| BfaI | CTAG | 1 cut(s) | 45 |
| BfmI | CTRYAG | 2 cut(s) | 282, 404 |
| BglII | AGATCT | 1 cut(s) | 388 |
| BisI | GCNGC | 5 cut(s) | 57, 65, 218, 690, 779 |
| BlpI | GCTNAGC | 1 cut(s) | 981 |
| BlsI | GCNGC | 5 cut(s) | 58, 66, 219, 691, 780 |
| Bme1390I | CCNGG | 1 cut(s) | 1142 |
| BmeT110I | CYCGRG | 3 cut(s) | 176, 527, 986 |
| BmgT120I | GGNCC | 3 cut(s) | 173, 174, 790 |
| BmiI | GGNNCC | 2 cut(s) | 175, 650 |
| BmrFI | CCNGG | 1 cut(s) | 1142 |
| BmsI | GCATC | 4 cut(s) | 68, 373, 471, 1150 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 981 |
| BsaHI | GRCGYC | 1 cut(s) | 325 |
| BsaJI | CCNNGG | 2 cut(s) | 169, 526 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 334, 532, 658, 1078 |
| Bse118I | RCCGGY | 1 cut(s) | 52 |
| Bse1I | ACTGG | 2 cut(s) | 454, 542 |
| Bse3DI | GCAATG | 1 cut(s) | 115 |
| BseBI | CCWGG | 1 cut(s) | 1142 |
| BseDI | CCNNGG | 2 cut(s) | 169, 526 |
| BseGI | GGATG | 2 cut(s) | 343, 502 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 334, 532, 658, 1078 |
| BseMI | GCAATG | 1 cut(s) | 115 |
| BseMII | CTCAG | 5 cut(s) | 297, 632, 732, 861, 972 |
| BseNI | ACTGG | 2 cut(s) | 454, 542 |
| BseSI | GKGCMC | 1 cut(s) | 177 |
| BseXI | GCAGC | 4 cut(s) | 76, 204, 701, 765 |
| BseYI | CCCAGC | 1 cut(s) | 658 |
| BsgI | GTGCAG | 1 cut(s) | 137 |
| BshFI | GGCC | 5 cut(s) | 122, 175, 611, 791, 860 |
| BshNI | GGYRCC | 1 cut(s) | 648 |
| BsiHKAI | GWGCWC | 1 cut(s) | 987 |
| BsiHKCI | CYCGRG | 3 cut(s) | 176, 527, 986 |
| BsiSI | CCGG | 1 cut(s) | 53 |
| BslFI | GGGAC | 1 cut(s) | 675 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 334, 532, 658, 1078 |
| BsmAI | GTCTC | 6 cut(s) | 85, 316, 413, 440, 672, 1178 |
| BsmBI | CGTCTC | 1 cut(s) | 316 |
| BsmFI | GGGAC | 1 cut(s) | 675 |
| BsnI | GGCC | 5 cut(s) | 122, 175, 611, 791, 860 |
| BsoBI | CYCGRG | 3 cut(s) | 176, 527, 986 |
| Bsp120I | GGGCCC | 1 cut(s) | 173 |
| Bsp1286I | GDGCHC | 3 cut(s) | 44, 177, 987 |
| Bsp1407I | TGTACA | 1 cut(s) | 499 |
| Bsp143I | GATC | 5 cut(s) | 47, 91, 223, 388, 959 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 981 |
| BspACI | CCGC | 2 cut(s) | 56, 1072 |
| BspANI | GGCC | 5 cut(s) | 122, 175, 611, 791, 860 |
| BspCNI | CTCAG | 5 cut(s) | 298, 631, 733, 862, 973 |
| BspHI | TCATGA | 2 cut(s) | 367, 442 |
| BspLI | GGNNCC | 2 cut(s) | 175, 650 |
| BspMAI | CTGCAG | 1 cut(s) | 408 |
| BspPI | GGATC | 1 cut(s) | 86 |
| BspT107I | GGYRCC | 1 cut(s) | 648 |
| BsrDI | GCAATG | 1 cut(s) | 115 |
| BsrFI | RCCGGY | 1 cut(s) | 52 |
| BsrGI | TGTACA | 1 cut(s) | 499 |
| BsrI | ACTGG | 2 cut(s) | 454, 542 |
| BssAI | RCCGGY | 1 cut(s) | 52 |
| BssECI | CCNNGG | 2 cut(s) | 169, 526 |
| BssMI | GATC | 5 cut(s) | 47, 91, 223, 388, 959 |
| BssNI | GRCGYC | 1 cut(s) | 325 |
| BssT1I | CCWWGG | 1 cut(s) | 169 |
| Bst2UI | CCWGG | 1 cut(s) | 1142 |
| Bst4CI | ACNGT | 4 cut(s) | 635, 666, 801, 897 |
| Bst6I | CTCTTC | 3 cut(s) | 411, 543, 1056 |
| BstACI | GRCGYC | 1 cut(s) | 325 |
| BstAUI | TGTACA | 1 cut(s) | 499 |
| BstC8I | GCNNGC | 8 cut(s) | 6, 54, 116, 120, 408, 627, 1134, 1138 |
| BstDEI | CTNAG | 7 cut(s) | 306, 392, 618, 741, 870, 981, 1206 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 530 |
| BstF5I | GGATG | 2 cut(s) | 343, 502 |
| BstKTI | GATC | 5 cut(s) | 50, 94, 226, 391, 962 |
| BstMAI | GTCTC | 6 cut(s) | 85, 316, 413, 440, 672, 1178 |
| BstMBI | GATC | 5 cut(s) | 47, 91, 223, 388, 959 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 10, 370, 655, 866, 875, 1142 |
| BstNI | CCWGG | 1 cut(s) | 1142 |
| BstNSI | RCATGY | 1 cut(s) | 629 |
| BstSCI | CCNGG | 1 cut(s) | 1140 |
| BstSFI | CTRYAG | 2 cut(s) | 282, 404 |
| BstSLI | GKGCMC | 1 cut(s) | 177 |
| BstV1I | GCAGC | 4 cut(s) | 76, 204, 701, 765 |
| BstX2I | RGATCY | 1 cut(s) | 388 |
| BstYI | RGATCY | 1 cut(s) | 388 |
| BsuRI | GGCC | 5 cut(s) | 122, 175, 611, 791, 860 |
| BtgZI | GCGATG | 1 cut(s) | 45 |
| BtsCI | GGATG | 2 cut(s) | 343, 502 |
| BtsIMutI | CAGTG | 2 cut(s) | 307, 902 |
| Cac8I | GCNNGC | 8 cut(s) | 6, 54, 116, 120, 408, 627, 1134, 1138 |
| CciI | TCATGA | 2 cut(s) | 367, 442 |
| Cfr10I | RCCGGY | 1 cut(s) | 52 |
| Cfr13I | GGNCC | 3 cut(s) | 173, 174, 790 |
| CseI | GACGC | 1 cut(s) | 333 |
| Csp6I | GTAC | 5 cut(s) | 166, 241, 500, 631, 991 |
| CviAII | CATG | 4 cut(s) | 368, 443, 626, 949 |
| CviQI | GTAC | 5 cut(s) | 166, 241, 500, 631, 991 |
| DdeI | CTNAG | 7 cut(s) | 306, 392, 618, 741, 870, 981, 1206 |
| DpnI | GATC | 5 cut(s) | 49, 93, 225, 390, 961 |
| DpnII | GATC | 5 cut(s) | 47, 91, 223, 388, 959 |
| EaeI | YGGCCR | 1 cut(s) | 609 |
| Eam1104I | CTCTTC | 3 cut(s) | 411, 543, 1056 |
| EarI | CTCTTC | 3 cut(s) | 411, 543, 1056 |
| Ecl136II | GAGCTC | 1 cut(s) | 985 |
| Eco130I | CCWWGG | 1 cut(s) | 169 |
| Eco147I | AGGCCT | 1 cut(s) | 122 |
| Eco24I | GRGCYC | 3 cut(s) | 44, 177, 987 |
| Eco53kI | GAGCTC | 1 cut(s) | 985 |
| Eco57I | CTGAAG | 2 cut(s) | 456, 871 |
| Eco88I | CYCGRG | 3 cut(s) | 176, 527, 986 |
| EcoICRI | GAGCTC | 1 cut(s) | 985 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 530 |
| EcoO109I | RGGNCCY | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 1140 |
| EcoT14I | CCWWGG | 1 cut(s) | 169 |
| EcoT38I | GRGCYC | 3 cut(s) | 44, 177, 987 |
| ErhI | CCWWGG | 1 cut(s) | 169 |
| Esp3I | CGTCTC | 1 cut(s) | 316 |
| FaeI | CATG | 4 cut(s) | 371, 446, 629, 952 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 140, 172 |
| FaqI | GGGAC | 1 cut(s) | 675 |
| FatI | CATG | 4 cut(s) | 367, 442, 625, 948 |
| Fnu4HI | GCNGC | 5 cut(s) | 57, 65, 218, 690, 779 |
| FokI | GGATG | 2 cut(s) | 350, 509 |
| FriOI | GRGCYC | 3 cut(s) | 44, 177, 987 |
| Fsp4HI | GCNGC | 5 cut(s) | 57, 65, 218, 690, 779 |
| FspBI | CTAG | 1 cut(s) | 45 |
| GluI | GCNGC | 5 cut(s) | 57, 65, 218, 690, 779 |
| GsaI | CCCAGC | 1 cut(s) | 662 |
| HaeIII | GGCC | 5 cut(s) | 122, 175, 611, 791, 860 |
| HapII | CCGG | 1 cut(s) | 53 |
| HgaI | GACGC | 1 cut(s) | 333 |
| Hin1I | GRCGYC | 1 cut(s) | 325 |
| Hin1II | CATG | 4 cut(s) | 371, 446, 629, 952 |
| HincII | GTYRAC | 1 cut(s) | 954 |
| HindII | GTYRAC | 1 cut(s) | 954 |
| HindIII | AAGCTT | 1 cut(s) | 695 |
| HinfI | GANTC | 2 cut(s) | 249, 551 |
| HpaI | GTTAAC | 1 cut(s) | 954 |
| HpaII | CCGG | 1 cut(s) | 53 |
| HphI | GGTGA | 2 cut(s) | 136, 1191 |
| Hpy166II | GTNNAC | 3 cut(s) | 902, 954, 1199 |
| Hpy188I | TCNGA | 6 cut(s) | 475, 621, 676, 742, 760, 964 |
| Hpy188III | TCNNGA | 9 cut(s) | 368, 443, 460, 529, 560, 682, 938, 1079, 1115 |
| Hpy8I | GTNNAC | 3 cut(s) | 902, 954, 1199 |
| Hpy99I | CGWCG | 2 cut(s) | 37, 198 |
| HpyAV | CCTTC | 7 cut(s) | 480, 526, 707, 724, 895, 919, 997 |
| HpyCH4III | ACNGT | 4 cut(s) | 635, 666, 801, 897 |
| HpyCH4IV | ACGT | 1 cut(s) | 196 |
| HpyCH4V | TGCA | 5 cut(s) | 118, 406, 484, 781, 1157 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 10, 370, 655, 866, 875, 1142 |
| HpyF3I | CTNAG | 7 cut(s) | 306, 392, 618, 741, 870, 981, 1206 |
| HpySE526I | ACGT | 1 cut(s) | 196 |
| Hsp92I | GRCGYC | 1 cut(s) | 325 |
| Hsp92II | CATG | 4 cut(s) | 371, 446, 629, 952 |
| KroI | GCCGGC | 1 cut(s) | 52 |
| KroNI | GCCGGC | 1 cut(s) | 54 |
| KspAI | GTTAAC | 1 cut(s) | 954 |
| Kzo9I | GATC | 5 cut(s) | 47, 91, 223, 388, 959 |
| LmnI | GCTCC | 1 cut(s) | 704 |
| Lsp1109I | GCAGC | 4 cut(s) | 76, 204, 701, 765 |
| LweI | GCATC | 4 cut(s) | 68, 373, 471, 1150 |
| MaeI | CTAG | 1 cut(s) | 45 |
| MaeII | ACGT | 1 cut(s) | 196 |
| MaeIII | GTNAC | 1 cut(s) | 85 |
| MalI | GATC | 5 cut(s) | 49, 93, 225, 390, 961 |
| MboI | GATC | 5 cut(s) | 47, 91, 223, 388, 959 |
| MboII | GAAGA | 8 cut(s) | 193, 398, 428, 448, 475, 560, 827, 1073 |
| MfeI | CAATTG | 1 cut(s) | 1041 |
| MflI | RGATCY | 1 cut(s) | 388 |
| MhlI | GDGCHC | 3 cut(s) | 44, 177, 987 |
| MluCI | AATT | 5 cut(s) | 101, 290, 808, 1041, 1118 |
| MlyI | GAGTC | 1 cut(s) | 560 |
| MnlI | CCTC | 7 cut(s) | 270, 423, 536, 639, 754, 781, 1009 |
| MreI | CGCCGGCG | 1 cut(s) | 52 |
| MroNI | GCCGGC | 1 cut(s) | 52 |
| MseI | TTAA | 5 cut(s) | 348, 434, 774, 855, 953 |
| MslI | CAYNNNNRTG | 1 cut(s) | 317 |
| MspI | CCGG | 1 cut(s) | 53 |
| MspR9I | CCNGG | 1 cut(s) | 1142 |
| MunI | CAATTG | 1 cut(s) | 1041 |
| MvaI | CCWGG | 1 cut(s) | 1142 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 10, 370, 655, 866, 875, 1142 |
| NaeI | GCCGGC | 1 cut(s) | 54 |
| NdeII | GATC | 5 cut(s) | 47, 91, 223, 388, 959 |
| NgoMIV | GCCGGC | 1 cut(s) | 52 |
| NlaIII | CATG | 4 cut(s) | 371, 446, 629, 952 |
| NlaIV | GGNNCC | 2 cut(s) | 175, 650 |
| NspI | RCATGY | 1 cut(s) | 629 |
| PaeI | GCATGC | 1 cut(s) | 629 |
| PaeR7I | CTCGAG | 1 cut(s) | 986 |
| PagI | TCATGA | 2 cut(s) | 367, 442 |
| PceI | AGGCCT | 1 cut(s) | 122 |
| PdiI | GCCGGC | 1 cut(s) | 54 |
| PfeI | GAWTC | 1 cut(s) | 249 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 334 |
| PkrI | GCNGC | 5 cut(s) | 58, 66, 219, 691, 780 |
| PleI | GAGTC | 1 cut(s) | 559 |
| PpsI | GAGTC | 1 cut(s) | 559 |
| Psp124BI | GAGCTC | 1 cut(s) | 987 |
| Psp6I | CCWGG | 1 cut(s) | 1140 |
| PspFI | CCCAGC | 1 cut(s) | 658 |
| PspGI | CCWGG | 1 cut(s) | 1140 |
| PspN4I | GGNNCC | 2 cut(s) | 175, 650 |
| PspOMI | GGGCCC | 1 cut(s) | 173 |
| PspPI | GGNCC | 3 cut(s) | 173, 174, 790 |
| PspXI | VCTCGAGB | 1 cut(s) | 986 |
| PstI | CTGCAG | 1 cut(s) | 408 |
| PsuI | RGATCY | 1 cut(s) | 388 |
| RsaI | GTAC | 5 cut(s) | 167, 242, 501, 632, 992 |
| RsaNI | GTAC | 5 cut(s) | 166, 241, 500, 631, 991 |
| RseI | CAYNNNNRTG | 1 cut(s) | 317 |
| SacI | GAGCTC | 1 cut(s) | 987 |
| SaqAI | TTAA | 5 cut(s) | 348, 434, 774, 855, 953 |
| SatI | GCNGC | 5 cut(s) | 57, 65, 218, 690, 779 |
| Sau3AI | GATC | 5 cut(s) | 47, 91, 223, 388, 959 |
| Sau96I | GGNCC | 3 cut(s) | 173, 174, 790 |
| SchI | GAGTC | 1 cut(s) | 560 |
| ScrFI | CCNGG | 1 cut(s) | 1142 |
| SduI | GDGCHC | 3 cut(s) | 44, 177, 987 |
| SfaNI | GCATC | 4 cut(s) | 68, 373, 471, 1150 |
| SfcI | CTRYAG | 2 cut(s) | 282, 404 |
| Sfr274I | CTCGAG | 1 cut(s) | 986 |
| SgrAI | CRCCGGYG | 1 cut(s) | 52 |
| SlaI | CTCGAG | 1 cut(s) | 986 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 317 |
| SmlI | CTYRAG | 1 cut(s) | 986 |
| SmoI | CTYRAG | 1 cut(s) | 986 |
| SphI | GCATGC | 1 cut(s) | 629 |
| Sse9I | AATT | 5 cut(s) | 101, 290, 808, 1041, 1118 |
| SseBI | AGGCCT | 1 cut(s) | 122 |
| SsiI | CCGC | 2 cut(s) | 56, 1072 |
| SspI | AATATT | 1 cut(s) | 489 |
| SspMI | CTAG | 1 cut(s) | 45 |
| SstI | GAGCTC | 1 cut(s) | 987 |
| StuI | AGGCCT | 1 cut(s) | 122 |
| StyD4I | CCNGG | 1 cut(s) | 1140 |
| StyI | CCWWGG | 1 cut(s) | 169 |
| TaaI | ACNGT | 4 cut(s) | 635, 666, 801, 897 |
| TaiI | ACGT | 1 cut(s) | 199 |
| TaqI | TCGA | 4 cut(s) | 193, 546, 987, 1188 |
| TasI | AATT | 5 cut(s) | 101, 290, 808, 1041, 1118 |
| TatI | WGTACW | 3 cut(s) | 240, 499, 990 |
| TauI | GCSGC | 1 cut(s) | 59 |
| TfiI | GAWTC | 1 cut(s) | 249 |
| Tru1I | TTAA | 5 cut(s) | 348, 434, 774, 855, 953 |
| Tru9I | TTAA | 5 cut(s) | 348, 434, 774, 855, 953 |
| TscAI | CASTG | 2 cut(s) | 307, 902 |
| TseI | GCWGC | 4 cut(s) | 64, 217, 689, 778 |
| TspDTI | ATGAA | 7 cut(s) | 301, 429, 431, 821, 932, 1070, 1074 |
| TspGWI | ACGGA | 1 cut(s) | 284 |
| TspRI | CASTG | 2 cut(s) | 307, 902 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 334 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 530 |
| XapI | RAATTY | 3 cut(s) | 290, 808, 1118 |
| XceI | RCATGY | 1 cut(s) | 629 |
| XhoI | CTCGAG | 1 cut(s) | 986 |
| XspI | CTAG | 1 cut(s) | 45 |