Rroxscaffold_6G00406980

Sorting nexin

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
29516160 .. 29521275
5116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406980.1

Sequence Viewer

Length: 1233 bp
ATGCTTGCCACGCAGAGAAGTATATCGGGGTCGTCGCAGAGCCCTAGATCGCCGGCGGCATCGCAGCCGTTCCTCTCAGTCTCGGTTACTGATCCTGTCAAATTGGGCAATGGCGTGCAGGCCTACATCTCCTACCGAGTAATCACCAAGACAAACTTCCCAGAGTACCAAGGGCCCGAGAAGATTGTCATTCGACGTTATAGTGATTTTGTTTGGCTGCGAGATCGTCTTTTTGAAAAGTACAAAGGAATCTTTATTCCTCCTATCCCAGAAAAGAGTGCTGTAGAAAAATTCCGTTTCAGTGCTGAGTTCATTGAGATGAGACGCCAAGCGTTGGATGTATTTGTTAATCGTATAGCTTCGCATCATGAGCTTCAACAAAGCGAAGATCTTAGAACATTTCTGCAGGCAGATGAAGAGACAATGGAGAGGTTAAGGTTTCATGAGACTGGTATCTTCAAGAAGAAGCCTTCAGATTTGATGCAAATATTCAAGGATGTACAATCCAAAGTGAGTGATGTTGTCCTCGGGAAGGAAAAGCCAGTCGAAGAGTCAAATCCTGAATATGAGAAGTTGAAACACTACATCTTTGAGCTTGAAAATCATTTGGCCGAAGCTCAGAAGCATGCGTACCGTCTTGTAAAGAGGCACCGAGAGCTGGGACAGTCTCTATCTGATTTCGGGAAAGCAGCCAAGCTTCTTGGAGCTTGTGAAGGTAATGCTCTTGGGAAGGCATTTTCTGAGCTTGGGGCAAAGTCAGAGGCATTATCATTTAAGCTGCAAAAAGAGGCCCACCAACTGTTGATGAATTTTGAAGAACCCTTGAAAGATTATGTTCGGGCTGTTCAATCTATTAAGGCCACCATAGCTGAAAGAGCAAATGCCTTCAGGCAACAGTGTGAACTTGCTGAAACAATGAAGTTGAAGGAGATAAATCTTGACAAACTCATGTTAACCAGATCAGACAAGGTGGGAGAAGCTGAGCTCGAGTACAAGGAGGCAAGTCACTTAAAGCATGCAATCACAGCTGATAGTGAGGAAGCGACCAGACGATTTGAAACAATTGTGCGACTGATGAATGAAGAGATTGTCCGCTTTCAGGAACAAAAAACAATAGATATGGGAGTTGCTTTTCACGAATTTGCCAAAGGGCAGGCACGCCTGGCAAATAGTATTGCAGATGCGTGGCGAAGTCTCCTGCCTAAACTCGAAAGTTGTTCACCTGCTCAGTGA

Protein Analysis

410

Amino Acids

46.95

Weight (kDa)

8.21

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PX PF00787 59 - 137 2.6e-22 PX domain
Vps5 PF09325 167 - 401 3.5e-20 Vps5 C terminal like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 648
AccB7I CCANNNNNTGG 1 cut(s) 334
AciI CCGC 2 cut(s) 56, 1093
AclWI GGATC 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 609
AcsI RAATTY 3 cut(s) 290, 808, 1139
AcuI CTGAAG 2 cut(s) 456, 871
AcyI GRCGYC 1 cut(s) 325
AfaI GTAC 5 cut(s) 167, 242, 501, 632, 992
AfiI CCNNNNNNNGG 4 cut(s) 334, 532, 658, 1099
AjnI CCWGG 1 cut(s) 1161
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
Alw21I GWGCWC 1 cut(s) 987
Alw26I GTCTC 6 cut(s) 85, 316, 413, 440, 672, 1199
AlwI GGATC 1 cut(s) 86
Ama87I CYCGRG 3 cut(s) 176, 527, 986
AoxI GGCC 5 cut(s) 120, 173, 609, 789, 858
ApaI GGGCCC 1 cut(s) 177
ApeKI GCWGC 4 cut(s) 64, 217, 689, 778
ApoI RAATTY 3 cut(s) 290, 808, 1139
AspS9I GGNCC 3 cut(s) 173, 174, 790
AsuHPI GGTGA 2 cut(s) 136, 1212
AvaI CYCGRG 3 cut(s) 176, 527, 986
BaeGI GKGCMC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 648
BanII GRGCYC 3 cut(s) 44, 177, 987
BarI GAAGNNNNNNTAC 2 cut(s) 614, 646
Bbv12I GWGCWC 1 cut(s) 987
BbvI GCAGC 4 cut(s) 76, 204, 701, 765
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 1163
BcoDI GTCTC 6 cut(s) 85, 316, 413, 440, 672, 1199
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 2 cut(s) 282, 404
BglII AGATCT 1 cut(s) 388
BisI GCNGC 5 cut(s) 57, 65, 218, 690, 779
BlpI GCTNAGC 1 cut(s) 981
BlsI GCNGC 5 cut(s) 58, 66, 219, 691, 780
Bme1390I CCNGG 1 cut(s) 1163
BmeT110I CYCGRG 3 cut(s) 176, 527, 986
BmgT120I GGNCC 3 cut(s) 173, 174, 790
BmiI GGNNCC 2 cut(s) 175, 650
BmrFI CCNGG 1 cut(s) 1163
BmsI GCATC 4 cut(s) 68, 373, 471, 1171
Bpu1102I GCTNAGC 1 cut(s) 981
BsaHI GRCGYC 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 169, 526
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 532, 658, 1099
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 454, 542
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 1163
BseDI CCNNGG 2 cut(s) 169, 526
BseGI GGATG 2 cut(s) 343, 502
BseLI CCNNNNNNNGG 4 cut(s) 334, 532, 658, 1099
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 5 cut(s) 90, 297, 632, 732, 972
BseNI ACTGG 2 cut(s) 454, 542
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 4 cut(s) 76, 204, 701, 765
BseYI CCCAGC 1 cut(s) 658
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 5 cut(s) 122, 175, 611, 791, 860
BshNI GGYRCC 1 cut(s) 648
BsiHKAI GWGCWC 1 cut(s) 987
BsiHKCI CYCGRG 3 cut(s) 176, 527, 986
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 675
BslI CCNNNNNNNGG 4 cut(s) 334, 532, 658, 1099
BsmAI GTCTC 6 cut(s) 85, 316, 413, 440, 672, 1199
BsmBI CGTCTC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 675
BsnI GGCC 5 cut(s) 122, 175, 611, 791, 860
BsoBI CYCGRG 3 cut(s) 176, 527, 986
Bsp120I GGGCCC 1 cut(s) 173
Bsp1286I GDGCHC 3 cut(s) 44, 177, 987
Bsp1407I TGTACA 1 cut(s) 499
Bsp143I GATC 5 cut(s) 47, 91, 223, 388, 959
Bsp1720I GCTNAGC 1 cut(s) 981
BspACI CCGC 2 cut(s) 56, 1093
BspANI GGCC 5 cut(s) 122, 175, 611, 791, 860
BspCNI CTCAG 5 cut(s) 89, 298, 631, 733, 973
BspHI TCATGA 2 cut(s) 367, 442
BspLI GGNNCC 2 cut(s) 175, 650
BspMAI CTGCAG 1 cut(s) 408
BspPI GGATC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 52
BsrGI TGTACA 1 cut(s) 499
BsrI ACTGG 2 cut(s) 454, 542
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 169, 526
BssMI GATC 5 cut(s) 47, 91, 223, 388, 959
BssNI GRCGYC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 1163
Bst4CI ACNGT 4 cut(s) 635, 666, 801, 897
Bst6I CTCTTC 3 cut(s) 411, 543, 1077
BstACI GRCGYC 1 cut(s) 325
BstAUI TGTACA 1 cut(s) 499
BstC8I GCNNGC 9 cut(s) 6, 54, 116, 120, 408, 627, 1017, 1155, 1159
BstDEI CTNAG 7 cut(s) 76, 306, 392, 618, 741, 981, 1227
BstENI CCTNNNNNAGG 1 cut(s) 530
BstF5I GGATG 2 cut(s) 343, 502
BstKTI GATC 5 cut(s) 50, 94, 226, 391, 962
BstMAI GTCTC 6 cut(s) 85, 316, 413, 440, 672, 1199
BstMBI GATC 5 cut(s) 47, 91, 223, 388, 959
BstMWI GCNNNNNNNGC 7 cut(s) 10, 370, 655, 866, 875, 1025, 1163
BstNI CCWGG 1 cut(s) 1163
BstNSI RCATGY 2 cut(s) 629, 1019
BstSCI CCNGG 1 cut(s) 1161
BstSFI CTRYAG 2 cut(s) 282, 404
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 4 cut(s) 76, 204, 701, 765
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 5 cut(s) 122, 175, 611, 791, 860
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 343, 502
BtsIMutI CAGTG 2 cut(s) 307, 902
Cac8I GCNNGC 9 cut(s) 6, 54, 116, 120, 408, 627, 1017, 1155, 1159
CciI TCATGA 2 cut(s) 367, 442
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 173, 174, 790
CseI GACGC 1 cut(s) 333
Csp6I GTAC 5 cut(s) 166, 241, 500, 631, 991
CviAII CATG 5 cut(s) 368, 443, 626, 949, 1016
CviQI GTAC 5 cut(s) 166, 241, 500, 631, 991
DdeI CTNAG 7 cut(s) 76, 306, 392, 618, 741, 981, 1227
DpnI GATC 5 cut(s) 49, 93, 225, 390, 961
DpnII GATC 5 cut(s) 47, 91, 223, 388, 959
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 3 cut(s) 411, 543, 1077
EarI CTCTTC 3 cut(s) 411, 543, 1077
Ecl136II GAGCTC 1 cut(s) 985
Eco130I CCWWGG 1 cut(s) 169
Eco147I AGGCCT 1 cut(s) 122
Eco24I GRGCYC 3 cut(s) 44, 177, 987
Eco53kI GAGCTC 1 cut(s) 985
Eco57I CTGAAG 2 cut(s) 456, 871
Eco88I CYCGRG 3 cut(s) 176, 527, 986
EcoICRI GAGCTC 1 cut(s) 985
EcoNI CCTNNNNNAGG 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 1161
EcoT14I CCWWGG 1 cut(s) 169
EcoT38I GRGCYC 3 cut(s) 44, 177, 987
ErhI CCWWGG 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 5 cut(s) 371, 446, 629, 952, 1019
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 1 cut(s) 675
FatI CATG 5 cut(s) 367, 442, 625, 948, 1015
Fnu4HI GCNGC 5 cut(s) 57, 65, 218, 690, 779
FokI GGATG 2 cut(s) 350, 509
FriOI GRGCYC 3 cut(s) 44, 177, 987
Fsp4HI GCNGC 5 cut(s) 57, 65, 218, 690, 779
FspBI CTAG 1 cut(s) 45
GluI GCNGC 5 cut(s) 57, 65, 218, 690, 779
GsaI CCCAGC 1 cut(s) 662
HaeIII GGCC 5 cut(s) 122, 175, 611, 791, 860
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 325
Hin1II CATG 5 cut(s) 371, 446, 629, 952, 1019
HincII GTYRAC 1 cut(s) 954
HindII GTYRAC 1 cut(s) 954
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 2 cut(s) 249, 551
HpaI GTTAAC 1 cut(s) 954
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 136, 1212
Hpy166II GTNNAC 3 cut(s) 902, 954, 1220
Hpy188I TCNGA 6 cut(s) 475, 621, 676, 742, 760, 964
Hpy188III TCNNGA 9 cut(s) 368, 443, 460, 529, 560, 682, 938, 1100, 1136
Hpy8I GTNNAC 3 cut(s) 902, 954, 1220
Hpy99I CGWCG 2 cut(s) 37, 198
HpyAV CCTTC 6 cut(s) 480, 526, 707, 724, 895, 919
HpyCH4III ACNGT 4 cut(s) 635, 666, 801, 897
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 6 cut(s) 118, 406, 484, 781, 1019, 1178
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 370, 655, 866, 875, 1025, 1163
HpyF3I CTNAG 7 cut(s) 76, 306, 392, 618, 741, 981, 1227
HpySE526I ACGT 1 cut(s) 196
Hsp92I GRCGYC 1 cut(s) 325
Hsp92II CATG 5 cut(s) 371, 446, 629, 952, 1019
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
KspAI GTTAAC 1 cut(s) 954
Kzo9I GATC 5 cut(s) 47, 91, 223, 388, 959
LmnI GCTCC 1 cut(s) 704
Lsp1109I GCAGC 4 cut(s) 76, 204, 701, 765
LweI GCATC 4 cut(s) 68, 373, 471, 1171
MaeI CTAG 1 cut(s) 45
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 2 cut(s) 85, 1004
MalI GATC 5 cut(s) 49, 93, 225, 390, 961
MboI GATC 5 cut(s) 47, 91, 223, 388, 959
MboII GAAGA 8 cut(s) 193, 398, 428, 448, 475, 560, 827, 1094
MfeI CAATTG 1 cut(s) 1062
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 3 cut(s) 44, 177, 987
MluCI AATT 5 cut(s) 101, 290, 808, 1062, 1139
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 9 cut(s) 83, 270, 423, 536, 639, 754, 781, 991, 1030
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 6 cut(s) 348, 434, 774, 855, 953, 1010
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 1028
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 1163
MunI CAATTG 1 cut(s) 1062
MvaI CCWGG 1 cut(s) 1163
MwoI GCNNNNNNNGC 7 cut(s) 10, 370, 655, 866, 875, 1025, 1163
NaeI GCCGGC 1 cut(s) 54
NdeII GATC 5 cut(s) 47, 91, 223, 388, 959
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 5 cut(s) 371, 446, 629, 952, 1019
NlaIV GGNNCC 2 cut(s) 175, 650
NmuCI GTSAC 1 cut(s) 1004
NspI RCATGY 2 cut(s) 629, 1019
PaeI GCATGC 2 cut(s) 629, 1019
PaeR7I CTCGAG 1 cut(s) 986
PagI TCATGA 2 cut(s) 367, 442
PceI AGGCCT 1 cut(s) 122
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 5 cut(s) 58, 66, 219, 691, 780
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
Psp124BI GAGCTC 1 cut(s) 987
Psp6I CCWGG 1 cut(s) 1161
PspFI CCCAGC 1 cut(s) 658
PspGI CCWGG 1 cut(s) 1161
PspN4I GGNNCC 2 cut(s) 175, 650
PspOMI GGGCCC 1 cut(s) 173
PspPI GGNCC 3 cut(s) 173, 174, 790
PspXI VCTCGAGB 1 cut(s) 986
PstI CTGCAG 1 cut(s) 408
PsuI RGATCY 1 cut(s) 388
PvuII CAGCTG 1 cut(s) 1028
RsaI GTAC 5 cut(s) 167, 242, 501, 632, 992
RsaNI GTAC 5 cut(s) 166, 241, 500, 631, 991
RseI CAYNNNNRTG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 987
SaqAI TTAA 6 cut(s) 348, 434, 774, 855, 953, 1010
SatI GCNGC 5 cut(s) 57, 65, 218, 690, 779
Sau3AI GATC 5 cut(s) 47, 91, 223, 388, 959
Sau96I GGNCC 3 cut(s) 173, 174, 790
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 1 cut(s) 1163
SduI GDGCHC 3 cut(s) 44, 177, 987
SfaNI GCATC 4 cut(s) 68, 373, 471, 1171
SfcI CTRYAG 2 cut(s) 282, 404
Sfr274I CTCGAG 1 cut(s) 986
SgrAI CRCCGGYG 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 986
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 986
SmoI CTYRAG 1 cut(s) 986
SphI GCATGC 2 cut(s) 629, 1019
Sse9I AATT 5 cut(s) 101, 290, 808, 1062, 1139
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 2 cut(s) 56, 1093
SspI AATATT 1 cut(s) 489
SspMI CTAG 1 cut(s) 45
SstI GAGCTC 1 cut(s) 987
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 1161
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 4 cut(s) 635, 666, 801, 897
TaiI ACGT 1 cut(s) 199
TaqI TCGA 4 cut(s) 193, 546, 987, 1209
TasI AATT 5 cut(s) 101, 290, 808, 1062, 1139
TatI WGTACW 3 cut(s) 240, 499, 990
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 6 cut(s) 348, 434, 774, 855, 953, 1010
Tru9I TTAA 6 cut(s) 348, 434, 774, 855, 953, 1010
TscAI CASTG 2 cut(s) 307, 902
TseFI GTSAC 1 cut(s) 1004
TseI GCWGC 4 cut(s) 64, 217, 689, 778
Tsp45I GTSAC 1 cut(s) 1004
TspDTI ATGAA 7 cut(s) 301, 429, 431, 821, 932, 1091, 1095
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 2 cut(s) 307, 902
Van91I CCANNNNNTGG 1 cut(s) 334
XagI CCTNNNNNAGG 1 cut(s) 530
XapI RAATTY 3 cut(s) 290, 808, 1139
XceI RCATGY 2 cut(s) 629, 1019
XhoI CTCGAG 1 cut(s) 986
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.