Sorting nexin
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06140 |
| fragaria_vesca | FvH4_6g19390 FvH4_6g19390 FvH4_6g19390 |
| malus_domestica | MD12G1029600.v1.1 MD14G1029900.v1.1 |
| prunus_persica | Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 |
| pyrus_communis | pycom12g02800 pycom14g02770 |
| rosa_chinensis | RchiOBHm_Chr3g0474681 |
| rosa_laevigata | RLG00000023902 |
| rosa_multiflora | Rmu_sc0001126.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00406980 |
| rosa_rugosa | Rorug03G0142300.1 Rorug03G0142400 Rorug03G0142500.1 Rorug03G0142600 Rorug03G0142700 |
| rosa_samantha | Rh3AG192900 Rh3BG222800 Rh3CG217600 Rh3DG218700 |
| rosa_wichuraiana | Rw3G017590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 645 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 331 |
| AciI | CCGC | 1 cut(s) | 1069 |
| AclWI | GGATC | 1 cut(s) | 83 |
| AcsI | RAATTY | 5 cut(s) | 151, 246, 287, 805, 1115 |
| AcuI | CTGAAG | 3 cut(s) | 630, 729, 868 |
| AcyI | GRCGYC | 2 cut(s) | 111, 322 |
| AfaI | GTAC | 5 cut(s) | 164, 239, 498, 629, 989 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 331, 529, 655, 744, 1075 |
| AjnI | CCWGG | 1 cut(s) | 114 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 137, 169 |
| Alw21I | GWGCWC | 1 cut(s) | 744 |
| Alw26I | GTCTC | 5 cut(s) | 313, 410, 437, 902, 1175 |
| AlwI | GGATC | 1 cut(s) | 83 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 977 |
| Ama87I | CYCGRG | 2 cut(s) | 524, 743 |
| AoxI | GGCC | 4 cut(s) | 117, 170, 786, 855 |
| ApeKI | GCWGC | 4 cut(s) | 61, 214, 686, 775 |
| ApoI | RAATTY | 5 cut(s) | 151, 246, 287, 805, 1115 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 288 |
| AspLEI | GCGC | 1 cut(s) | 721 |
| AspS9I | GGNCC | 2 cut(s) | 170, 787 |
| AsuHPI | GGTGA | 2 cut(s) | 133, 1188 |
| AvaI | CYCGRG | 2 cut(s) | 524, 743 |
| BanI | GGYRCC | 1 cut(s) | 645 |
| BanII | GRGCYC | 3 cut(s) | 44, 744, 819 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 611, 643 |
| Bbv12I | GWGCWC | 1 cut(s) | 744 |
| BbvI | GCAGC | 4 cut(s) | 73, 201, 698, 762 |
| BccI | CCATC | 1 cut(s) | 475 |
| BceAI | ACGGC | 2 cut(s) | 37, 49 |
| BciT130I | CCWGG | 1 cut(s) | 116 |
| BcoDI | GTCTC | 5 cut(s) | 313, 410, 437, 902, 1175 |
| BfaI | CTAG | 1 cut(s) | 45 |
| BfmI | CTRYAG | 3 cut(s) | 279, 401, 861 |
| BglII | AGATCT | 1 cut(s) | 385 |
| BisI | GCNGC | 4 cut(s) | 62, 215, 687, 776 |
| BlpI | GCTNAGC | 1 cut(s) | 978 |
| BlsI | GCNGC | 4 cut(s) | 63, 216, 688, 777 |
| Bme1390I | CCNGG | 1 cut(s) | 116 |
| BmeT110I | CYCGRG | 2 cut(s) | 524, 743 |
| BmgT120I | GGNCC | 2 cut(s) | 170, 787 |
| BmiI | GGNNCC | 1 cut(s) | 647 |
| BmrFI | CCNGG | 1 cut(s) | 116 |
| BmsI | GCATC | 3 cut(s) | 370, 468, 1147 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 978 |
| BsaBI | GATNNNNATC | 1 cut(s) | 185 |
| BsaHI | GRCGYC | 2 cut(s) | 111, 322 |
| BsaJI | CCNNGG | 2 cut(s) | 166, 523 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 331, 529, 655, 744, 1075 |
| Bse1I | ACTGG | 3 cut(s) | 92, 451, 539 |
| Bse3DI | GCAATG | 1 cut(s) | 112 |
| Bse8I | GATNNNNATC | 1 cut(s) | 185 |
| BseBI | CCWGG | 1 cut(s) | 116 |
| BseDI | CCNNGG | 2 cut(s) | 166, 523 |
| BseGI | GGATG | 3 cut(s) | 186, 340, 499 |
| BseJI | GATNNNNATC | 1 cut(s) | 185 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 331, 529, 655, 744, 1075 |
| BseMI | GCAATG | 1 cut(s) | 112 |
| BseMII | CTCAG | 5 cut(s) | 165, 294, 858, 897, 969 |
| BseNI | ACTGG | 3 cut(s) | 92, 451, 539 |
| BseRI | GAGGAG | 1 cut(s) | 560 |
| BseXI | GCAGC | 4 cut(s) | 73, 201, 698, 762 |
| BseYI | CCCAGC | 1 cut(s) | 655 |
| BshFI | GGCC | 4 cut(s) | 119, 172, 788, 857 |
| BshNI | GGYRCC | 1 cut(s) | 645 |
| BsiHKAI | GWGCWC | 1 cut(s) | 744 |
| BsiHKCI | CYCGRG | 2 cut(s) | 524, 743 |
| BslFI | GGGAC | 1 cut(s) | 672 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 331, 529, 655, 744, 1075 |
| BsmAI | GTCTC | 5 cut(s) | 313, 410, 437, 902, 1175 |
| BsmBI | CGTCTC | 1 cut(s) | 313 |
| BsmFI | GGGAC | 1 cut(s) | 672 |
| BsnI | GGCC | 4 cut(s) | 119, 172, 788, 857 |
| BsoBI | CYCGRG | 2 cut(s) | 524, 743 |
| Bsp1286I | GDGCHC | 3 cut(s) | 44, 744, 819 |
| Bsp1407I | TGTACA | 1 cut(s) | 496 |
| Bsp143I | GATC | 5 cut(s) | 47, 88, 220, 385, 956 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 978 |
| BspACI | CCGC | 1 cut(s) | 1069 |
| BspANI | GGCC | 4 cut(s) | 119, 172, 788, 857 |
| BspCNI | CTCAG | 5 cut(s) | 166, 295, 859, 898, 970 |
| BspHI | TCATGA | 2 cut(s) | 364, 439 |
| BspLI | GGNNCC | 1 cut(s) | 647 |
| BspPI | GGATC | 1 cut(s) | 83 |
| BspQI | GCTCTTC | 1 cut(s) | 807 |
| BspT107I | GGYRCC | 1 cut(s) | 645 |
| BsrDI | GCAATG | 1 cut(s) | 112 |
| BsrGI | TGTACA | 1 cut(s) | 496 |
| BsrI | ACTGG | 3 cut(s) | 92, 451, 539 |
| BssECI | CCNNGG | 2 cut(s) | 166, 523 |
| BssMI | GATC | 5 cut(s) | 47, 88, 220, 385, 956 |
| BssNI | GRCGYC | 2 cut(s) | 111, 322 |
| BssT1I | CCWWGG | 1 cut(s) | 166 |
| Bst2UI | CCWGG | 1 cut(s) | 116 |
| Bst4CI | ACNGT | 2 cut(s) | 134, 632 |
| Bst6I | CTCTTC | 3 cut(s) | 408, 807, 1053 |
| BstACI | GRCGYC | 2 cut(s) | 111, 322 |
| BstAUI | TGTACA | 1 cut(s) | 496 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 624, 1131, 1135 |
| BstDEI | CTNAG | 6 cut(s) | 174, 303, 867, 906, 978, 1203 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 527 |
| BstF5I | GGATG | 3 cut(s) | 186, 340, 499 |
| BstHHI | GCGC | 1 cut(s) | 721 |
| BstKTI | GATC | 5 cut(s) | 50, 91, 223, 388, 959 |
| BstMAI | GTCTC | 5 cut(s) | 313, 410, 437, 902, 1175 |
| BstMBI | GATC | 5 cut(s) | 47, 88, 220, 385, 956 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 10, 58, 367, 652, 863, 872, 1139 |
| BstNI | CCWGG | 1 cut(s) | 116 |
| BstNSI | RCATGY | 1 cut(s) | 626 |
| BstSCI | CCNGG | 1 cut(s) | 114 |
| BstSFI | CTRYAG | 3 cut(s) | 279, 401, 861 |
| BstV1I | GCAGC | 4 cut(s) | 73, 201, 698, 762 |
| BstX2I | RGATCY | 1 cut(s) | 385 |
| BstYI | RGATCY | 1 cut(s) | 385 |
| BsuRI | GGCC | 4 cut(s) | 119, 172, 788, 857 |
| BtsCI | GGATG | 3 cut(s) | 186, 340, 499 |
| BtsIMutI | CAGTG | 2 cut(s) | 84, 304 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 624, 1131, 1135 |
| CaiI | CAGNNNCTG | 1 cut(s) | 977 |
| CciI | TCATGA | 2 cut(s) | 364, 439 |
| CfoI | GCGC | 1 cut(s) | 721 |
| Cfr13I | GGNCC | 2 cut(s) | 170, 787 |
| CseI | GACGC | 2 cut(s) | 100, 330 |
| Csp6I | GTAC | 5 cut(s) | 163, 238, 497, 628, 988 |
| CviAII | CATG | 5 cut(s) | 365, 440, 623, 946, 983 |
| CviQI | GTAC | 5 cut(s) | 163, 238, 497, 628, 988 |
| DdeI | CTNAG | 6 cut(s) | 174, 303, 867, 906, 978, 1203 |
| DpnI | GATC | 5 cut(s) | 49, 90, 222, 387, 958 |
| DpnII | GATC | 5 cut(s) | 47, 88, 220, 385, 956 |
| Eam1104I | CTCTTC | 3 cut(s) | 408, 807, 1053 |
| EarI | CTCTTC | 3 cut(s) | 408, 807, 1053 |
| Ecl136II | GAGCTC | 1 cut(s) | 742 |
| Eco130I | CCWWGG | 1 cut(s) | 166 |
| Eco147I | AGGCCT | 1 cut(s) | 119 |
| Eco24I | GRGCYC | 3 cut(s) | 44, 744, 819 |
| Eco53kI | GAGCTC | 1 cut(s) | 742 |
| Eco57I | CTGAAG | 3 cut(s) | 630, 729, 868 |
| Eco88I | CYCGRG | 2 cut(s) | 524, 743 |
| EcoICRI | GAGCTC | 1 cut(s) | 742 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 527 |
| EcoO109I | RGGNCCY | 1 cut(s) | 170 |
| EcoRII | CCWGG | 1 cut(s) | 114 |
| EcoT14I | CCWWGG | 1 cut(s) | 166 |
| EcoT38I | GRGCYC | 3 cut(s) | 44, 744, 819 |
| ErhI | CCWWGG | 1 cut(s) | 166 |
| Esp3I | CGTCTC | 1 cut(s) | 313 |
| FaeI | CATG | 5 cut(s) | 368, 443, 626, 949, 986 |
| FaqI | GGGAC | 1 cut(s) | 672 |
| FatI | CATG | 5 cut(s) | 364, 439, 622, 945, 982 |
| Fnu4HI | GCNGC | 4 cut(s) | 62, 215, 687, 776 |
| FokI | GGATG | 3 cut(s) | 173, 347, 506 |
| FriOI | GRGCYC | 3 cut(s) | 44, 744, 819 |
| Fsp4HI | GCNGC | 4 cut(s) | 62, 215, 687, 776 |
| FspBI | CTAG | 1 cut(s) | 45 |
| GlaI | GCGC | 1 cut(s) | 720 |
| GluI | GCNGC | 4 cut(s) | 62, 215, 687, 776 |
| GsaI | CCCAGC | 1 cut(s) | 659 |
| HaeIII | GGCC | 4 cut(s) | 119, 172, 788, 857 |
| HgaI | GACGC | 2 cut(s) | 100, 330 |
| HhaI | GCGC | 1 cut(s) | 721 |
| Hin1I | GRCGYC | 2 cut(s) | 111, 322 |
| Hin1II | CATG | 5 cut(s) | 368, 443, 626, 949, 986 |
| Hin6I | GCGC | 1 cut(s) | 719 |
| HinP1I | GCGC | 1 cut(s) | 719 |
| HinfI | GANTC | 2 cut(s) | 548, 1187 |
| HphI | GGTGA | 2 cut(s) | 133, 1188 |
| Hpy166II | GTNNAC | 2 cut(s) | 899, 1196 |
| Hpy188I | TCNGA | 7 cut(s) | 191, 472, 673, 709, 739, 757, 961 |
| Hpy188III | TCNNGA | 8 cut(s) | 365, 440, 457, 526, 557, 679, 935, 1076 |
| Hpy8I | GTNNAC | 2 cut(s) | 899, 1196 |
| Hpy99I | CGWCG | 3 cut(s) | 58, 61, 195 |
| HpyAV | CCTTC | 6 cut(s) | 523, 704, 721, 892, 916, 994 |
| HpyCH4III | ACNGT | 2 cut(s) | 134, 632 |
| HpyCH4IV | ACGT | 1 cut(s) | 193 |
| HpyCH4V | TGCA | 3 cut(s) | 481, 778, 1154 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 10, 58, 367, 652, 863, 872, 1139 |
| HpyF3I | CTNAG | 6 cut(s) | 174, 303, 867, 906, 978, 1203 |
| HpySE526I | ACGT | 1 cut(s) | 193 |
| Hsp92I | GRCGYC | 2 cut(s) | 111, 322 |
| Hsp92II | CATG | 5 cut(s) | 368, 443, 626, 949, 986 |
| HspAI | GCGC | 1 cut(s) | 719 |
| Kzo9I | GATC | 5 cut(s) | 47, 88, 220, 385, 956 |
| LguI | GCTCTTC | 1 cut(s) | 807 |
| LmnI | GCTCC | 1 cut(s) | 701 |
| Lsp1109I | GCAGC | 4 cut(s) | 73, 201, 698, 762 |
| LweI | GCATC | 3 cut(s) | 370, 468, 1147 |
| MaeI | CTAG | 1 cut(s) | 45 |
| MaeII | ACGT | 1 cut(s) | 193 |
| MaeIII | GTNAC | 2 cut(s) | 33, 82 |
| MalI | GATC | 5 cut(s) | 49, 90, 222, 387, 958 |
| MboI | GATC | 5 cut(s) | 47, 88, 220, 385, 956 |
| MboII | GAAGA | 8 cut(s) | 190, 395, 425, 445, 472, 824, 1038, 1070 |
| MfeI | CAATTG | 1 cut(s) | 1038 |
| MflI | RGATCY | 1 cut(s) | 385 |
| MhlI | GDGCHC | 3 cut(s) | 44, 744, 819 |
| MluCI | AATT | 8 cut(s) | 98, 151, 246, 287, 569, 805, 1038, 1115 |
| MlyI | GAGTC | 1 cut(s) | 557 |
| MmeI | TCCRAC | 1 cut(s) | 214 |
| MnlI | CCTC | 7 cut(s) | 267, 420, 533, 538, 636, 778, 1006 |
| MroXI | GAANNNNTTC | 1 cut(s) | 288 |
| MseI | TTAA | 4 cut(s) | 390, 431, 771, 800 |
| MslI | CAYNNNNRTG | 1 cut(s) | 314 |
| MspA1I | CMGCKG | 1 cut(s) | 796 |
| MspR9I | CCNGG | 1 cut(s) | 116 |
| MunI | CAATTG | 1 cut(s) | 1038 |
| MvaI | CCWGG | 1 cut(s) | 116 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 10, 58, 367, 652, 863, 872, 1139 |
| NdeII | GATC | 5 cut(s) | 47, 88, 220, 385, 956 |
| NlaIII | CATG | 5 cut(s) | 368, 443, 626, 949, 986 |
| NlaIV | GGNNCC | 1 cut(s) | 647 |
| NmuCI | GTSAC | 2 cut(s) | 33, 82 |
| NspI | RCATGY | 1 cut(s) | 626 |
| PaeI | GCATGC | 1 cut(s) | 626 |
| PagI | TCATGA | 2 cut(s) | 364, 439 |
| PceI | AGGCCT | 1 cut(s) | 119 |
| PciSI | GCTCTTC | 1 cut(s) | 807 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 62 |
| PdmI | GAANNNNTTC | 1 cut(s) | 288 |
| PfeI | GAWTC | 1 cut(s) | 1187 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 331 |
| PkrI | GCNGC | 4 cut(s) | 63, 216, 688, 777 |
| PleI | GAGTC | 1 cut(s) | 556 |
| PpsI | GAGTC | 1 cut(s) | 556 |
| Psp124BI | GAGCTC | 1 cut(s) | 744 |
| Psp6I | CCWGG | 1 cut(s) | 114 |
| PspFI | CCCAGC | 1 cut(s) | 655 |
| PspGI | CCWGG | 1 cut(s) | 114 |
| PspN4I | GGNNCC | 1 cut(s) | 647 |
| PspPI | GGNCC | 2 cut(s) | 170, 787 |
| PstNI | CAGNNNCTG | 1 cut(s) | 977 |
| PsuI | RGATCY | 1 cut(s) | 385 |
| PvuII | CAGCTG | 1 cut(s) | 796 |
| RsaI | GTAC | 5 cut(s) | 164, 239, 498, 629, 989 |
| RsaNI | GTAC | 5 cut(s) | 163, 238, 497, 628, 988 |
| RseI | CAYNNNNRTG | 1 cut(s) | 314 |
| SacI | GAGCTC | 1 cut(s) | 744 |
| SapI | GCTCTTC | 1 cut(s) | 807 |
| SaqAI | TTAA | 4 cut(s) | 390, 431, 771, 800 |
| SatI | GCNGC | 4 cut(s) | 62, 215, 687, 776 |
| Sau3AI | GATC | 5 cut(s) | 47, 88, 220, 385, 956 |
| Sau96I | GGNCC | 2 cut(s) | 170, 787 |
| SchI | GAGTC | 1 cut(s) | 557 |
| ScrFI | CCNGG | 1 cut(s) | 116 |
| SduI | GDGCHC | 3 cut(s) | 44, 744, 819 |
| SfaNI | GCATC | 3 cut(s) | 370, 468, 1147 |
| SfcI | CTRYAG | 3 cut(s) | 279, 401, 861 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 314 |
| SphI | GCATGC | 1 cut(s) | 626 |
| Sse9I | AATT | 8 cut(s) | 98, 151, 246, 287, 569, 805, 1038, 1115 |
| SseBI | AGGCCT | 1 cut(s) | 119 |
| SsiI | CCGC | 1 cut(s) | 1069 |
| SspI | AATATT | 1 cut(s) | 486 |
| SspMI | CTAG | 1 cut(s) | 45 |
| SstI | GAGCTC | 1 cut(s) | 744 |
| StuI | AGGCCT | 1 cut(s) | 119 |
| StyD4I | CCNGG | 1 cut(s) | 114 |
| StyI | CCWWGG | 1 cut(s) | 166 |
| TaaI | ACNGT | 2 cut(s) | 134, 632 |
| TaiI | ACGT | 1 cut(s) | 196 |
| TasI | AATT | 8 cut(s) | 98, 151, 246, 287, 569, 805, 1038, 1115 |
| TatI | WGTACW | 3 cut(s) | 237, 496, 987 |
| TfiI | GAWTC | 1 cut(s) | 1187 |
| Tru1I | TTAA | 4 cut(s) | 390, 431, 771, 800 |
| Tru9I | TTAA | 4 cut(s) | 390, 431, 771, 800 |
| TscAI | CASTG | 2 cut(s) | 91, 304 |
| TseFI | GTSAC | 2 cut(s) | 33, 82 |
| TseI | GCWGC | 4 cut(s) | 61, 214, 686, 775 |
| Tsp45I | GTSAC | 2 cut(s) | 33, 82 |
| TspDTI | ATGAA | 7 cut(s) | 298, 426, 428, 818, 929, 1067, 1071 |
| TspGWI | ACGGA | 1 cut(s) | 70 |
| TspRI | CASTG | 2 cut(s) | 91, 304 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 331 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 527 |
| XapI | RAATTY | 5 cut(s) | 151, 246, 287, 805, 1115 |
| XceI | RCATGY | 1 cut(s) | 626 |
| XmnI | GAANNNNTTC | 1 cut(s) | 288 |
| XspI | CTAG | 1 cut(s) | 45 |