FvH4_6g19390

Sorting nexin

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
12926628 .. 12932055
5428 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19390.t1

Sequence Viewer

Length: 1209 bp
ATGCTTGCCACGCAGAGAAGTATATCGGGGTCGTCACAGAGCCCTAGATCGCCGTCGTCGCAGCCGTTCCTGTCAGTTTCCGTCACTGATCCAGTCAAATTGGGCAATGGCGTCCAGGCCTACATCTCCTACCGTGTTATCACCAAGACAAATTTCCCAGAGTACCAAGGGCCTGAGAAGATTGTCATCCGACGTTATAGTGATTTTGTTTGGCTGCGAGATCGTCTTTTTGAAAAGTACAAAGGAATTTTTATTCCTCCTATCCCAGAAAAGAGTGCTGTAGAAAAATTTCGTTTCAGTGCTGAGTTCATAGAGATGAGACGCCAAGCATTGGATGTATTTGTCAATCGTATAGCTTCGCATCATGAGCTTCAACAAAGTGAAGATCTTAAAACATTCCTACAGGCAGATGAAGAGACAATGGAGAGGTTAAGGTTTCATGAGACTGGTATCTTCAAGAAGAAGCCATCAGATTTGATGCAAATATTCAAGGATGTACAATCCAAAGTTAGTGATGTTGTCCTCGGGAAGGAAAAGCCAGTTGAGGAGTCAAATCCTGAATATGAGAAATTGAAACACTACATCTTTGAGCTTGAAAACCATTTGACTGAAGCCCAGAAGCATGCGTACCGTCTTGTAAAGAGGCACCGAGAGCTGGGACAATCTCTATCAGATTTCGGGAAAGCAGCCAAACTTCTTGGAGCTTCTGAAGGTAATGCGCTTGGGAAGGCATTTTCCGAGCTCGGGGCAAAGTCAGAAGCATTATCATTTAAGCTGCAAAAAGAGGCCCACCAGCTGTTAATGAATTTTGAAGAGCCCTTGAAAGATTATGTTCGGGCTGTTCAATCTATAAAGGCCACTATAGCTGAGAGAGCAAATGCCTTCAGGCAACAATGTGAACTTGCTGAGACAATGAAGTTGAAGGAGATAAATCTTGACAAACTCATGCTAACCAGATCAGACAAGGTGGCAGAAGCTGAGCATGAGTACAAGGAGTTGAAGGCTGATAGCGAGGAAGCGACCAGAAGATTTGAAACAATTGTGCGACTGATGAATGAAGAGATTGTCCGCTTTCAGGAACAAAAGACAATAGATATGGGAGTTGCTTTCCACGAATTTGCCAAAGGGCAGGCACGCTTGGCAAATAGTATTGCAGATGCTTGGAGAAGTCTCCTGCCTAAACTTGAATCTTGTTCACCTGCTCAGTGA

Protein Analysis

403

Amino Acids

46.2

Weight (kDa)

8.25

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PX PF00787 58 - 136 2.2e-22 PX domain
Vps5 PF09325 166 - 393 5.1e-24 Vps5 C terminal like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 645
AccB7I CCANNNNNTGG 1 cut(s) 331
AciI CCGC 1 cut(s) 1069
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 5 cut(s) 151, 246, 287, 805, 1115
AcuI CTGAAG 3 cut(s) 630, 729, 868
AcyI GRCGYC 2 cut(s) 111, 322
AfaI GTAC 5 cut(s) 164, 239, 498, 629, 989
AfiI CCNNNNNNNGG 5 cut(s) 331, 529, 655, 744, 1075
AjnI CCWGG 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 5 cut(s) 313, 410, 437, 902, 1175
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 977
Ama87I CYCGRG 2 cut(s) 524, 743
AoxI GGCC 4 cut(s) 117, 170, 786, 855
ApeKI GCWGC 4 cut(s) 61, 214, 686, 775
ApoI RAATTY 5 cut(s) 151, 246, 287, 805, 1115
Asp700I GAANNNNTTC 1 cut(s) 288
AspLEI GCGC 1 cut(s) 721
AspS9I GGNCC 2 cut(s) 170, 787
AsuHPI GGTGA 2 cut(s) 133, 1188
AvaI CYCGRG 2 cut(s) 524, 743
BanI GGYRCC 1 cut(s) 645
BanII GRGCYC 3 cut(s) 44, 744, 819
BarI GAAGNNNNNNTAC 2 cut(s) 611, 643
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 4 cut(s) 73, 201, 698, 762
BccI CCATC 1 cut(s) 475
BceAI ACGGC 2 cut(s) 37, 49
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 5 cut(s) 313, 410, 437, 902, 1175
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 3 cut(s) 279, 401, 861
BglII AGATCT 1 cut(s) 385
BisI GCNGC 4 cut(s) 62, 215, 687, 776
BlpI GCTNAGC 1 cut(s) 978
BlsI GCNGC 4 cut(s) 63, 216, 688, 777
Bme1390I CCNGG 1 cut(s) 116
BmeT110I CYCGRG 2 cut(s) 524, 743
BmgT120I GGNCC 2 cut(s) 170, 787
BmiI GGNNCC 1 cut(s) 647
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 3 cut(s) 370, 468, 1147
Bpu1102I GCTNAGC 1 cut(s) 978
BsaBI GATNNNNATC 1 cut(s) 185
BsaHI GRCGYC 2 cut(s) 111, 322
BsaJI CCNNGG 2 cut(s) 166, 523
Bsc4I CCNNNNNNNGG 5 cut(s) 331, 529, 655, 744, 1075
Bse1I ACTGG 3 cut(s) 92, 451, 539
Bse3DI GCAATG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 185
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 166, 523
BseGI GGATG 3 cut(s) 186, 340, 499
BseJI GATNNNNATC 1 cut(s) 185
BseLI CCNNNNNNNGG 5 cut(s) 331, 529, 655, 744, 1075
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 5 cut(s) 165, 294, 858, 897, 969
BseNI ACTGG 3 cut(s) 92, 451, 539
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 4 cut(s) 73, 201, 698, 762
BseYI CCCAGC 1 cut(s) 655
BshFI GGCC 4 cut(s) 119, 172, 788, 857
BshNI GGYRCC 1 cut(s) 645
BsiHKAI GWGCWC 1 cut(s) 744
BsiHKCI CYCGRG 2 cut(s) 524, 743
BslFI GGGAC 1 cut(s) 672
BslI CCNNNNNNNGG 5 cut(s) 331, 529, 655, 744, 1075
BsmAI GTCTC 5 cut(s) 313, 410, 437, 902, 1175
BsmBI CGTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 672
BsnI GGCC 4 cut(s) 119, 172, 788, 857
BsoBI CYCGRG 2 cut(s) 524, 743
Bsp1286I GDGCHC 3 cut(s) 44, 744, 819
Bsp1407I TGTACA 1 cut(s) 496
Bsp143I GATC 5 cut(s) 47, 88, 220, 385, 956
Bsp1720I GCTNAGC 1 cut(s) 978
BspACI CCGC 1 cut(s) 1069
BspANI GGCC 4 cut(s) 119, 172, 788, 857
BspCNI CTCAG 5 cut(s) 166, 295, 859, 898, 970
BspHI TCATGA 2 cut(s) 364, 439
BspLI GGNNCC 1 cut(s) 647
BspPI GGATC 1 cut(s) 83
BspQI GCTCTTC 1 cut(s) 807
BspT107I GGYRCC 1 cut(s) 645
BsrDI GCAATG 1 cut(s) 112
BsrGI TGTACA 1 cut(s) 496
BsrI ACTGG 3 cut(s) 92, 451, 539
BssECI CCNNGG 2 cut(s) 166, 523
BssMI GATC 5 cut(s) 47, 88, 220, 385, 956
BssNI GRCGYC 2 cut(s) 111, 322
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 134, 632
Bst6I CTCTTC 3 cut(s) 408, 807, 1053
BstACI GRCGYC 2 cut(s) 111, 322
BstAUI TGTACA 1 cut(s) 496
BstC8I GCNNGC 4 cut(s) 6, 624, 1131, 1135
BstDEI CTNAG 6 cut(s) 174, 303, 867, 906, 978, 1203
BstENI CCTNNNNNAGG 1 cut(s) 527
BstF5I GGATG 3 cut(s) 186, 340, 499
BstHHI GCGC 1 cut(s) 721
BstKTI GATC 5 cut(s) 50, 91, 223, 388, 959
BstMAI GTCTC 5 cut(s) 313, 410, 437, 902, 1175
BstMBI GATC 5 cut(s) 47, 88, 220, 385, 956
BstMWI GCNNNNNNNGC 7 cut(s) 10, 58, 367, 652, 863, 872, 1139
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 3 cut(s) 279, 401, 861
BstV1I GCAGC 4 cut(s) 73, 201, 698, 762
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 4 cut(s) 119, 172, 788, 857
BtsCI GGATG 3 cut(s) 186, 340, 499
BtsIMutI CAGTG 2 cut(s) 84, 304
Cac8I GCNNGC 4 cut(s) 6, 624, 1131, 1135
CaiI CAGNNNCTG 1 cut(s) 977
CciI TCATGA 2 cut(s) 364, 439
CfoI GCGC 1 cut(s) 721
Cfr13I GGNCC 2 cut(s) 170, 787
CseI GACGC 2 cut(s) 100, 330
Csp6I GTAC 5 cut(s) 163, 238, 497, 628, 988
CviAII CATG 5 cut(s) 365, 440, 623, 946, 983
CviQI GTAC 5 cut(s) 163, 238, 497, 628, 988
DdeI CTNAG 6 cut(s) 174, 303, 867, 906, 978, 1203
DpnI GATC 5 cut(s) 49, 90, 222, 387, 958
DpnII GATC 5 cut(s) 47, 88, 220, 385, 956
Eam1104I CTCTTC 3 cut(s) 408, 807, 1053
EarI CTCTTC 3 cut(s) 408, 807, 1053
Ecl136II GAGCTC 1 cut(s) 742
Eco130I CCWWGG 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 119
Eco24I GRGCYC 3 cut(s) 44, 744, 819
Eco53kI GAGCTC 1 cut(s) 742
Eco57I CTGAAG 3 cut(s) 630, 729, 868
Eco88I CYCGRG 2 cut(s) 524, 743
EcoICRI GAGCTC 1 cut(s) 742
EcoNI CCTNNNNNAGG 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 166
EcoT38I GRGCYC 3 cut(s) 44, 744, 819
ErhI CCWWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 313
FaeI CATG 5 cut(s) 368, 443, 626, 949, 986
FaqI GGGAC 1 cut(s) 672
FatI CATG 5 cut(s) 364, 439, 622, 945, 982
Fnu4HI GCNGC 4 cut(s) 62, 215, 687, 776
FokI GGATG 3 cut(s) 173, 347, 506
FriOI GRGCYC 3 cut(s) 44, 744, 819
Fsp4HI GCNGC 4 cut(s) 62, 215, 687, 776
FspBI CTAG 1 cut(s) 45
GlaI GCGC 1 cut(s) 720
GluI GCNGC 4 cut(s) 62, 215, 687, 776
GsaI CCCAGC 1 cut(s) 659
HaeIII GGCC 4 cut(s) 119, 172, 788, 857
HgaI GACGC 2 cut(s) 100, 330
HhaI GCGC 1 cut(s) 721
Hin1I GRCGYC 2 cut(s) 111, 322
Hin1II CATG 5 cut(s) 368, 443, 626, 949, 986
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HinfI GANTC 2 cut(s) 548, 1187
HphI GGTGA 2 cut(s) 133, 1188
Hpy166II GTNNAC 2 cut(s) 899, 1196
Hpy188I TCNGA 7 cut(s) 191, 472, 673, 709, 739, 757, 961
Hpy188III TCNNGA 8 cut(s) 365, 440, 457, 526, 557, 679, 935, 1076
Hpy8I GTNNAC 2 cut(s) 899, 1196
Hpy99I CGWCG 3 cut(s) 58, 61, 195
HpyAV CCTTC 6 cut(s) 523, 704, 721, 892, 916, 994
HpyCH4III ACNGT 2 cut(s) 134, 632
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 481, 778, 1154
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 58, 367, 652, 863, 872, 1139
HpyF3I CTNAG 6 cut(s) 174, 303, 867, 906, 978, 1203
HpySE526I ACGT 1 cut(s) 193
Hsp92I GRCGYC 2 cut(s) 111, 322
Hsp92II CATG 5 cut(s) 368, 443, 626, 949, 986
HspAI GCGC 1 cut(s) 719
Kzo9I GATC 5 cut(s) 47, 88, 220, 385, 956
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 1 cut(s) 701
Lsp1109I GCAGC 4 cut(s) 73, 201, 698, 762
LweI GCATC 3 cut(s) 370, 468, 1147
MaeI CTAG 1 cut(s) 45
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 2 cut(s) 33, 82
MalI GATC 5 cut(s) 49, 90, 222, 387, 958
MboI GATC 5 cut(s) 47, 88, 220, 385, 956
MboII GAAGA 8 cut(s) 190, 395, 425, 445, 472, 824, 1038, 1070
MfeI CAATTG 1 cut(s) 1038
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 3 cut(s) 44, 744, 819
MluCI AATT 8 cut(s) 98, 151, 246, 287, 569, 805, 1038, 1115
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 7 cut(s) 267, 420, 533, 538, 636, 778, 1006
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 4 cut(s) 390, 431, 771, 800
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 796
MspR9I CCNGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 1038
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 7 cut(s) 10, 58, 367, 652, 863, 872, 1139
NdeII GATC 5 cut(s) 47, 88, 220, 385, 956
NlaIII CATG 5 cut(s) 368, 443, 626, 949, 986
NlaIV GGNNCC 1 cut(s) 647
NmuCI GTSAC 2 cut(s) 33, 82
NspI RCATGY 1 cut(s) 626
PaeI GCATGC 1 cut(s) 626
PagI TCATGA 2 cut(s) 364, 439
PceI AGGCCT 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 807
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 1187
PflMI CCANNNNNTGG 1 cut(s) 331
PkrI GCNGC 4 cut(s) 63, 216, 688, 777
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
Psp124BI GAGCTC 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 655
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 647
PspPI GGNCC 2 cut(s) 170, 787
PstNI CAGNNNCTG 1 cut(s) 977
PsuI RGATCY 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 796
RsaI GTAC 5 cut(s) 164, 239, 498, 629, 989
RsaNI GTAC 5 cut(s) 163, 238, 497, 628, 988
RseI CAYNNNNRTG 1 cut(s) 314
SacI GAGCTC 1 cut(s) 744
SapI GCTCTTC 1 cut(s) 807
SaqAI TTAA 4 cut(s) 390, 431, 771, 800
SatI GCNGC 4 cut(s) 62, 215, 687, 776
Sau3AI GATC 5 cut(s) 47, 88, 220, 385, 956
Sau96I GGNCC 2 cut(s) 170, 787
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 3 cut(s) 44, 744, 819
SfaNI GCATC 3 cut(s) 370, 468, 1147
SfcI CTRYAG 3 cut(s) 279, 401, 861
SmiMI CAYNNNNRTG 1 cut(s) 314
SphI GCATGC 1 cut(s) 626
Sse9I AATT 8 cut(s) 98, 151, 246, 287, 569, 805, 1038, 1115
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 1 cut(s) 1069
SspI AATATT 1 cut(s) 486
SspMI CTAG 1 cut(s) 45
SstI GAGCTC 1 cut(s) 744
StuI AGGCCT 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 134, 632
TaiI ACGT 1 cut(s) 196
TasI AATT 8 cut(s) 98, 151, 246, 287, 569, 805, 1038, 1115
TatI WGTACW 3 cut(s) 237, 496, 987
TfiI GAWTC 1 cut(s) 1187
Tru1I TTAA 4 cut(s) 390, 431, 771, 800
Tru9I TTAA 4 cut(s) 390, 431, 771, 800
TscAI CASTG 2 cut(s) 91, 304
TseFI GTSAC 2 cut(s) 33, 82
TseI GCWGC 4 cut(s) 61, 214, 686, 775
Tsp45I GTSAC 2 cut(s) 33, 82
TspDTI ATGAA 7 cut(s) 298, 426, 428, 818, 929, 1067, 1071
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 91, 304
Van91I CCANNNNNTGG 1 cut(s) 331
XagI CCTNNNNNAGG 1 cut(s) 527
XapI RAATTY 5 cut(s) 151, 246, 287, 805, 1115
XceI RCATGY 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.