Sorting nexin
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06140 |
| fragaria_vesca | FvH4_6g19390 FvH4_6g19390 FvH4_6g19390 |
| malus_domestica | MD12G1029600.v1.1 MD14G1029900.v1.1 |
| prunus_persica | Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 |
| pyrus_communis | pycom12g02800 pycom14g02770 |
| rosa_chinensis | RchiOBHm_Chr3g0474681 |
| rosa_laevigata | RLG00000023902 |
| rosa_multiflora | Rmu_sc0001126.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00406980 |
| rosa_rugosa | Rorug03G0142300.1 Rorug03G0142400 Rorug03G0142500.1 Rorug03G0142600 Rorug03G0142700 |
| rosa_samantha | Rh3AG192900 Rh3BG222800 Rh3CG217600 Rh3DG218700 |
| rosa_wichuraiana | Rw3G017590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1042 |
| AciI | CCGC | 1 cut(s) | 257 |
| AclWI | GGATC | 3 cut(s) | 83, 228, 393 |
| AcsI | RAATTY | 5 cut(s) | 151, 246, 305, 802, 1112 |
| AcuI | CTGAAG | 2 cut(s) | 356, 627 |
| AcyI | GRCGYC | 2 cut(s) | 111, 322 |
| AfaI | GTAC | 6 cut(s) | 68, 239, 277, 495, 831, 986 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 741 |
| AgsI | TTSAA | 9 cut(s) | 233, 487, 571, 593, 809, 820, 919, 997, 1031 |
| AjnI | CCWGG | 2 cut(s) | 114, 1134 |
| Alw21I | GWGCWC | 1 cut(s) | 981 |
| Alw26I | GTCTC | 6 cut(s) | 82, 230, 410, 437, 666, 749 |
| AlwI | GGATC | 3 cut(s) | 83, 228, 393 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 86 |
| AoxI | GGCC | 4 cut(s) | 170, 726, 783, 852 |
| ApeKI | GCWGC | 2 cut(s) | 683, 772 |
| ApoI | RAATTY | 5 cut(s) | 151, 246, 305, 802, 1112 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1082, 1114 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 355 |
| AspA2I | CCTAGG | 1 cut(s) | 694 |
| AspLEI | GCGC | 1 cut(s) | 1042 |
| AspS9I | GGNCC | 2 cut(s) | 170, 784 |
| AsuC2I | CCSGG | 1 cut(s) | 1196 |
| AsuHPI | GGTGA | 1 cut(s) | 1019 |
| AvrII | CCTAGG | 1 cut(s) | 694 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 50, 83 |
| BanII | GRGCYC | 1 cut(s) | 44 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 608, 640 |
| BauI | CACGAG | 1 cut(s) | 980 |
| BbsI | GAAGAC | 1 cut(s) | 1160 |
| Bbv12I | GWGCWC | 1 cut(s) | 981 |
| BbvCI | CCTCAGC | 1 cut(s) | 1002 |
| BbvI | GCAGC | 2 cut(s) | 695, 759 |
| BceAI | ACGGC | 2 cut(s) | 49, 821 |
| BciT130I | CCWGG | 2 cut(s) | 116, 1136 |
| BcnI | CCSGG | 1 cut(s) | 1196 |
| BcoDI | GTCTC | 6 cut(s) | 82, 230, 410, 437, 666, 749 |
| BfaI | CTAG | 3 cut(s) | 45, 665, 695 |
| BfmI | CTRYAG | 1 cut(s) | 215 |
| BglII | AGATCT | 1 cut(s) | 47 |
| BisI | GCNGC | 2 cut(s) | 684, 773 |
| BlnI | CCTAGG | 1 cut(s) | 694 |
| BlpI | GCTNAGC | 1 cut(s) | 975 |
| BlsI | GCNGC | 2 cut(s) | 685, 774 |
| Bme1390I | CCNGG | 3 cut(s) | 116, 1136, 1196 |
| BmgT120I | GGNCC | 2 cut(s) | 170, 784 |
| BmrFI | CCNGG | 3 cut(s) | 116, 1136, 1196 |
| BmrI | ACTGGG | 1 cut(s) | 662 |
| BmsI | GCATC | 1 cut(s) | 465 |
| BmuI | ACTGGG | 1 cut(s) | 662 |
| BpiI | GAAGAC | 1 cut(s) | 1160 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1002, 1176 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 975 |
| BpuMI | CCSGG | 1 cut(s) | 1196 |
| BsaAI | YACGTR | 1 cut(s) | 833 |
| BsaBI | GATNNNNATC | 1 cut(s) | 479 |
| BsaHI | GRCGYC | 2 cut(s) | 111, 322 |
| BsaI | GGTCTC | 1 cut(s) | 82 |
| BsaJI | CCNNGG | 4 cut(s) | 166, 694, 1119, 1194 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 741 |
| Bse118I | RCCGGY | 1 cut(s) | 535 |
| Bse1I | ACTGG | 2 cut(s) | 451, 657 |
| Bse3DI | GCAATG | 1 cut(s) | 112 |
| Bse8I | GATNNNNATC | 1 cut(s) | 479 |
| BseBI | CCWGG | 2 cut(s) | 116, 1136 |
| BseDI | CCNNGG | 4 cut(s) | 166, 694, 1119, 1194 |
| BseGI | GGATG | 3 cut(s) | 340, 480, 496 |
| BseJI | GATNNNNATC | 1 cut(s) | 479 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 741 |
| BseMI | GCAATG | 1 cut(s) | 112 |
| BseMII | CTCAG | 5 cut(s) | 93, 380, 855, 966, 993 |
| BseNI | ACTGG | 2 cut(s) | 451, 657 |
| BseXI | GCAGC | 2 cut(s) | 695, 759 |
| Bsh1236I | CGCG | 1 cut(s) | 1042 |
| BshFI | GGCC | 4 cut(s) | 172, 728, 785, 854 |
| BsiHKAI | GWGCWC | 1 cut(s) | 981 |
| BsiSI | CCGG | 2 cut(s) | 536, 1196 |
| BslFI | GGGAC | 2 cut(s) | 669, 1137 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 741 |
| BsmAI | GTCTC | 6 cut(s) | 82, 230, 410, 437, 666, 749 |
| BsmBI | CGTCTC | 1 cut(s) | 230 |
| BsmFI | GGGAC | 2 cut(s) | 669, 1137 |
| BsnI | GGCC | 4 cut(s) | 172, 728, 785, 854 |
| Bso31I | GGTCTC | 1 cut(s) | 82 |
| Bsp1286I | GDGCHC | 2 cut(s) | 44, 981 |
| Bsp1407I | TGTACA | 1 cut(s) | 493 |
| Bsp143I | GATC | 5 cut(s) | 47, 88, 220, 385, 953 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 975 |
| BspACI | CCGC | 1 cut(s) | 257 |
| BspANI | GGCC | 4 cut(s) | 172, 728, 785, 854 |
| BspCNI | CTCAG | 5 cut(s) | 92, 381, 856, 967, 994 |
| BspFNI | CGCG | 1 cut(s) | 1042 |
| BspHI | TCATGA | 2 cut(s) | 364, 439 |
| BspPI | GGATC | 3 cut(s) | 83, 228, 393 |
| BspTNI | GGTCTC | 1 cut(s) | 82 |
| BsrDI | GCAATG | 1 cut(s) | 112 |
| BsrFI | RCCGGY | 1 cut(s) | 535 |
| BsrGI | TGTACA | 1 cut(s) | 493 |
| BsrI | ACTGG | 2 cut(s) | 451, 657 |
| BssAI | RCCGGY | 1 cut(s) | 535 |
| BssECI | CCNNGG | 4 cut(s) | 166, 694, 1119, 1194 |
| BssMI | GATC | 5 cut(s) | 47, 88, 220, 385, 953 |
| BssNI | GRCGYC | 2 cut(s) | 111, 322 |
| BssSI | CACGAG | 1 cut(s) | 980 |
| BssT1I | CCWWGG | 3 cut(s) | 166, 694, 1119 |
| Bst2BI | CACGAG | 1 cut(s) | 980 |
| Bst2UI | CCWGG | 2 cut(s) | 116, 1136 |
| Bst4CI | ACNGT | 6 cut(s) | 280, 629, 660, 795, 891, 1145 |
| Bst6I | CTCTTC | 4 cut(s) | 267, 408, 537, 1050 |
| BstACI | GRCGYC | 2 cut(s) | 111, 322 |
| BstAUI | TGTACA | 1 cut(s) | 493 |
| BstBAI | YACGTR | 1 cut(s) | 833 |
| BstC8I | GCNNGC | 3 cut(s) | 465, 621, 1132 |
| BstDEI | CTNAG | 6 cut(s) | 79, 389, 864, 975, 1002, 1176 |
| BstF5I | GGATG | 3 cut(s) | 340, 480, 496 |
| BstFNI | CGCG | 1 cut(s) | 1042 |
| BstHHI | GCGC | 1 cut(s) | 1042 |
| BstKTI | GATC | 5 cut(s) | 50, 91, 223, 388, 956 |
| BstMAI | GTCTC | 6 cut(s) | 82, 230, 410, 437, 666, 749 |
| BstMBI | GATC | 5 cut(s) | 47, 88, 220, 385, 953 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 10, 860, 869, 1136 |
| BstNI | CCWGG | 2 cut(s) | 116, 1136 |
| BstNSI | RCATGY | 1 cut(s) | 623 |
| BstSCI | CCNGG | 3 cut(s) | 114, 1134, 1194 |
| BstSFI | CTRYAG | 1 cut(s) | 215 |
| BstUI | CGCG | 1 cut(s) | 1042 |
| BstV1I | GCAGC | 2 cut(s) | 695, 759 |
| BstV2I | GAAGAC | 1 cut(s) | 1160 |
| BstX2I | RGATCY | 2 cut(s) | 47, 385 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 471 |
| BstYI | RGATCY | 2 cut(s) | 47, 385 |
| BsuRI | GGCC | 4 cut(s) | 172, 728, 785, 854 |
| BtsCI | GGATG | 3 cut(s) | 340, 480, 496 |
| BtsIMutI | CAGTG | 2 cut(s) | 304, 896 |
| Cac8I | GCNNGC | 3 cut(s) | 465, 621, 1132 |
| CaiI | CAGNNNCTG | 1 cut(s) | 86 |
| CciI | TCATGA | 2 cut(s) | 364, 439 |
| CfoI | GCGC | 1 cut(s) | 1042 |
| Cfr10I | RCCGGY | 1 cut(s) | 535 |
| Cfr13I | GGNCC | 2 cut(s) | 170, 784 |
| CseI | GACGC | 3 cut(s) | 100, 311, 1163 |
| Csp6I | GTAC | 6 cut(s) | 67, 238, 276, 494, 830, 985 |
| CviAII | CATG | 6 cut(s) | 365, 440, 620, 943, 1093, 1109 |
| CviQI | GTAC | 6 cut(s) | 67, 238, 276, 494, 830, 985 |
| DdeI | CTNAG | 6 cut(s) | 79, 389, 864, 975, 1002, 1176 |
| DpnI | GATC | 5 cut(s) | 49, 90, 222, 387, 955 |
| DpnII | GATC | 5 cut(s) | 47, 88, 220, 385, 953 |
| Eam1104I | CTCTTC | 4 cut(s) | 267, 408, 537, 1050 |
| EarI | CTCTTC | 4 cut(s) | 267, 408, 537, 1050 |
| EciI | GGCGGA | 1 cut(s) | 246 |
| Eco130I | CCWWGG | 3 cut(s) | 166, 694, 1119 |
| Eco147I | AGGCCT | 1 cut(s) | 728 |
| Eco24I | GRGCYC | 1 cut(s) | 44 |
| Eco31I | GGTCTC | 1 cut(s) | 82 |
| Eco57I | CTGAAG | 2 cut(s) | 356, 627 |
| EcoRI | GAATTC | 1 cut(s) | 305 |
| EcoRII | CCWGG | 2 cut(s) | 114, 1134 |
| EcoT14I | CCWWGG | 3 cut(s) | 166, 694, 1119 |
| EcoT22I | ATGCAT | 1 cut(s) | 625 |
| EcoT38I | GRGCYC | 1 cut(s) | 44 |
| ErhI | CCWWGG | 3 cut(s) | 166, 694, 1119 |
| Esp3I | CGTCTC | 1 cut(s) | 230 |
| FaeI | CATG | 6 cut(s) | 368, 443, 623, 946, 1096, 1112 |
| FaqI | GGGAC | 2 cut(s) | 669, 1137 |
| FatI | CATG | 6 cut(s) | 364, 439, 619, 942, 1092, 1108 |
| Fnu4HI | GCNGC | 2 cut(s) | 684, 773 |
| FokI | GGATG | 3 cut(s) | 347, 487, 503 |
| FriOI | GRGCYC | 1 cut(s) | 44 |
| Fsp4HI | GCNGC | 2 cut(s) | 684, 773 |
| FspBI | CTAG | 3 cut(s) | 45, 665, 695 |
| GlaI | GCGC | 1 cut(s) | 1041 |
| GluI | GCNGC | 2 cut(s) | 684, 773 |
| HaeIII | GGCC | 4 cut(s) | 172, 728, 785, 854 |
| HapII | CCGG | 2 cut(s) | 536, 1196 |
| HgaI | GACGC | 3 cut(s) | 100, 311, 1163 |
| HhaI | GCGC | 1 cut(s) | 1042 |
| Hin1I | GRCGYC | 2 cut(s) | 111, 322 |
| Hin1II | CATG | 6 cut(s) | 368, 443, 623, 946, 1096, 1112 |
| Hin6I | GCGC | 1 cut(s) | 1040 |
| HinP1I | GCGC | 1 cut(s) | 1040 |
| HincII | GTYRAC | 2 cut(s) | 346, 948 |
| HindII | GTYRAC | 2 cut(s) | 346, 948 |
| HinfI | GANTC | 2 cut(s) | 545, 1184 |
| HpaI | GTTAAC | 1 cut(s) | 346 |
| HpaII | CCGG | 2 cut(s) | 536, 1196 |
| HphI | GGTGA | 1 cut(s) | 1019 |
| Hpy166II | GTNNAC | 3 cut(s) | 346, 896, 948 |
| Hpy188I | TCNGA | 4 cut(s) | 390, 524, 754, 958 |
| Hpy188III | TCNNGA | 7 cut(s) | 158, 266, 365, 440, 554, 932, 1073 |
| Hpy8I | GTNNAC | 3 cut(s) | 346, 896, 948 |
| Hpy99I | CGWCG | 3 cut(s) | 37, 58, 195 |
| HpyAV | CCTTC | 4 cut(s) | 406, 701, 913, 991 |
| HpyCH4III | ACNGT | 6 cut(s) | 280, 629, 660, 795, 891, 1145 |
| HpyCH4IV | ACGT | 2 cut(s) | 193, 832 |
| HpyCH4V | TGCA | 5 cut(s) | 478, 623, 775, 841, 1151 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 10, 860, 869, 1136 |
| HpyF3I | CTNAG | 6 cut(s) | 79, 389, 864, 975, 1002, 1176 |
| HpySE526I | ACGT | 2 cut(s) | 193, 832 |
| Hsp92I | GRCGYC | 2 cut(s) | 111, 322 |
| Hsp92II | CATG | 6 cut(s) | 368, 443, 623, 946, 1096, 1112 |
| HspAI | GCGC | 1 cut(s) | 1040 |
| KspAI | GTTAAC | 1 cut(s) | 346 |
| Kzo9I | GATC | 5 cut(s) | 47, 88, 220, 385, 953 |
| LmnI | GCTCC | 3 cut(s) | 696, 698, 1196 |
| Lsp1109I | GCAGC | 2 cut(s) | 695, 759 |
| LweI | GCATC | 1 cut(s) | 465 |
| MaeI | CTAG | 3 cut(s) | 45, 665, 695 |
| MaeII | ACGT | 2 cut(s) | 193, 832 |
| MaeIII | GTNAC | 3 cut(s) | 57, 82, 194 |
| MalI | GATC | 5 cut(s) | 49, 90, 222, 387, 955 |
| MboI | GATC | 5 cut(s) | 47, 88, 220, 385, 953 |
| MboII | GAAGA | 9 cut(s) | 190, 254, 425, 475, 554, 821, 1035, 1067, 1160 |
| MflI | RGATCY | 2 cut(s) | 47, 385 |
| MhlI | GDGCHC | 2 cut(s) | 44, 981 |
| MluCI | AATT | 8 cut(s) | 98, 151, 246, 305, 765, 802, 909, 1112 |
| MlyI | GAGTC | 1 cut(s) | 554 |
| MmeI | TCCRAC | 1 cut(s) | 732 |
| MnlI | CCTC | 8 cut(s) | 270, 312, 376, 420, 633, 775, 997, 1003 |
| Mph1103I | ATGCAT | 1 cut(s) | 625 |
| MroXI | GAANNNNTTC | 1 cut(s) | 355 |
| MseI | TTAA | 7 cut(s) | 345, 431, 456, 768, 797, 849, 912 |
| MslI | CAYNNNNRTG | 1 cut(s) | 314 |
| MspI | CCGG | 2 cut(s) | 536, 1196 |
| MspR9I | CCNGG | 3 cut(s) | 116, 1136, 1196 |
| MvaI | CCWGG | 2 cut(s) | 116, 1136 |
| MvnI | CGCG | 1 cut(s) | 1042 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 10, 860, 869, 1136 |
| NciI | CCSGG | 1 cut(s) | 1196 |
| NdeII | GATC | 5 cut(s) | 47, 88, 220, 385, 953 |
| NlaIII | CATG | 6 cut(s) | 368, 443, 623, 946, 1096, 1112 |
| NmuCI | GTSAC | 1 cut(s) | 57 |
| NsiI | ATGCAT | 1 cut(s) | 625 |
| NspI | RCATGY | 1 cut(s) | 623 |
| PaeI | GCATGC | 1 cut(s) | 623 |
| PagI | TCATGA | 2 cut(s) | 364, 439 |
| PceI | AGGCCT | 1 cut(s) | 728 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 62 |
| PdmI | GAANNNNTTC | 1 cut(s) | 355 |
| PfeI | GAWTC | 1 cut(s) | 1184 |
| PkrI | GCNGC | 2 cut(s) | 685, 774 |
| PleI | GAGTC | 1 cut(s) | 553 |
| PpsI | GAGTC | 1 cut(s) | 553 |
| Ppu21I | YACGTR | 1 cut(s) | 833 |
| Psp6I | CCWGG | 2 cut(s) | 114, 1134 |
| PspGI | CCWGG | 2 cut(s) | 114, 1134 |
| PspPI | GGNCC | 2 cut(s) | 170, 784 |
| PstNI | CAGNNNCTG | 1 cut(s) | 86 |
| PsuI | RGATCY | 2 cut(s) | 47, 385 |
| RsaI | GTAC | 6 cut(s) | 68, 239, 277, 495, 831, 986 |
| RsaNI | GTAC | 6 cut(s) | 67, 238, 276, 494, 830, 985 |
| RseI | CAYNNNNRTG | 1 cut(s) | 314 |
| SaqAI | TTAA | 7 cut(s) | 345, 431, 456, 768, 797, 849, 912 |
| SatI | GCNGC | 2 cut(s) | 684, 773 |
| Sau3AI | GATC | 5 cut(s) | 47, 88, 220, 385, 953 |
| Sau96I | GGNCC | 2 cut(s) | 170, 784 |
| SchI | GAGTC | 1 cut(s) | 554 |
| ScrFI | CCNGG | 3 cut(s) | 116, 1136, 1196 |
| SduI | GDGCHC | 2 cut(s) | 44, 981 |
| SfaNI | GCATC | 1 cut(s) | 465 |
| SfcI | CTRYAG | 1 cut(s) | 215 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 314 |
| SphI | GCATGC | 1 cut(s) | 623 |
| Sse9I | AATT | 8 cut(s) | 98, 151, 246, 305, 765, 802, 909, 1112 |
| SseBI | AGGCCT | 1 cut(s) | 728 |
| SsiI | CCGC | 1 cut(s) | 257 |
| SspMI | CTAG | 3 cut(s) | 45, 665, 695 |
| StuI | AGGCCT | 1 cut(s) | 728 |
| StyD4I | CCNGG | 3 cut(s) | 114, 1134, 1194 |
| StyI | CCWWGG | 3 cut(s) | 166, 694, 1119 |
| TaaI | ACNGT | 6 cut(s) | 280, 629, 660, 795, 891, 1145 |
| TaiI | ACGT | 2 cut(s) | 196, 835 |
| TaqI | TCGA | 2 cut(s) | 190, 1182 |
| TaqII | GACCGA | 1 cut(s) | 64 |
| TasI | AATT | 8 cut(s) | 98, 151, 246, 305, 765, 802, 909, 1112 |
| TatI | WGTACW | 3 cut(s) | 237, 493, 984 |
| TfiI | GAWTC | 1 cut(s) | 1184 |
| Tru1I | TTAA | 7 cut(s) | 345, 431, 456, 768, 797, 849, 912 |
| Tru9I | TTAA | 7 cut(s) | 345, 431, 456, 768, 797, 849, 912 |
| TscAI | CASTG | 2 cut(s) | 304, 896 |
| TseFI | GTSAC | 1 cut(s) | 57 |
| TseI | GCWGC | 2 cut(s) | 683, 772 |
| Tsp45I | GTSAC | 1 cut(s) | 57 |
| TspDTI | ATGAA | 6 cut(s) | 298, 381, 426, 428, 815, 1125 |
| TspGWI | ACGGA | 2 cut(s) | 42, 281 |
| TspRI | CASTG | 2 cut(s) | 304, 896 |
| XapI | RAATTY | 5 cut(s) | 151, 246, 305, 802, 1112 |
| XceI | RCATGY | 1 cut(s) | 623 |
| XmaJI | CCTAGG | 1 cut(s) | 694 |
| XmnI | GAANNNNTTC | 1 cut(s) | 355 |
| XspI | CTAG | 3 cut(s) | 45, 665, 695 |
| Zsp2I | ATGCAT | 1 cut(s) | 625 |