MD14G1029900.v1.1

Sorting nexin

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
2588116 .. 2593944
5829 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1029900.v1.1.491

Sequence Viewer

Length: 1203 bp
ATGCTTACCACGCAGAGAAGCATATCGGGGTCGTCGCAGAGCCCTAGATCTCCGTCGTCACAGCCGTACCTGTCGGTCTCAGTTACTGATCCTGTGAAATTGGGCAATGGCGTCCAGGCATACATCTCCTACCGAGTGATAACCAAGACAAATTTTCCTGAATACCAAGGGCCAGAGAAGATTGTTATTCGACGTTACAATGATTTTGTTTGGCTACAGGATCGTCTCTTTGAAAAGTACAAAGGAATTTTTATTCCGCCTCTTCCAGAAAAGAGTACCGTAGAGAAGTTCCGTTTCAGTGCTGAATTCATTGAGATGAGGCGTCAAGCATTGGATGTATTTGTTAACCGAATAGCTTCACATCATGAACTTCAGCAAAGTGAGGATCTGAGAACCTTCTTACAAGCAGATGAAGAGACAATGGAGAGGTTAAGGTTTCATGAGACTGGTATCTTTAAGAAGCCAGCAGATTGGATGCAAATCTTCAAGGATGTACAATCTAAAGTGAGTGATGTGGTTCTCGGAAAGGAAAAGCCGGTGGAAGAGTCAAATCCTGAATATGAGAAGTTGAAACACTACATTTTTGAGCTTGAAAACCACTTGGCTGAAGCCCAGAAGCATGCATACCGTCTTGTAAAGAGGCACAGAGAACTGGGACAGTCTCTAGCAGATTTTGGGAAAGCAGCCAAGCTCCTAGGAGCTTGTGAAGGTAATGCTCTTGGAAAGGCCTTTACCGAGCTTGGGGCGAAGTCGGAGACATTATCAATTAAGCTGCAAAAGGAGGCCCAACAACTGTTAATGAATTTTGAAGAACCCTTGAAAGATTATGTACGTGCCGTGCAATCTATTAAGGCCACAATAGCTGAGAGAGCAAATGCTTTCAGGCAACAGTGTGAACTTGCTGAAACAATTAAGTTGAAGGAGATAAATCTTGACAAGCTCATGTTGACCAGATCAGACAGGGTGGGAGAAGCTGAGCACGAGTACAAGGAGTTGAAGGCTGAGGGTGAGGAAGCAACCAGAAGATTTGAAACGATAGCGCGACTGATGAGTGAAGAGATAGTTCGCTTTCAGGAACAAAAAACAACAGACATGGGGTTTGCTTTCCATGAATTTGCCAAGGGACAGGCACGCCTGGCAAACAGTATTGCAGACGCTTGGCGAAGTCTTCTACCTAAGCTCGAATCTTGCTCCCCGGTTTAG

Protein Analysis

401

Amino Acids

46.06

Weight (kDa)

7.14

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PX PF00787 58 - 136 3.2e-22 PX domain
Vps5 PF09325 167 - 392 2.3e-24 Vps5 C terminal like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1042
AciI CCGC 1 cut(s) 257
AclWI GGATC 3 cut(s) 83, 228, 393
AcsI RAATTY 5 cut(s) 151, 246, 305, 802, 1112
AcuI CTGAAG 2 cut(s) 356, 627
AcyI GRCGYC 2 cut(s) 111, 322
AfaI GTAC 6 cut(s) 68, 239, 277, 495, 831, 986
AfiI CCNNNNNNNGG 1 cut(s) 741
AgsI TTSAA 9 cut(s) 233, 487, 571, 593, 809, 820, 919, 997, 1031
AjnI CCWGG 2 cut(s) 114, 1134
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 6 cut(s) 82, 230, 410, 437, 666, 749
AlwI GGATC 3 cut(s) 83, 228, 393
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 4 cut(s) 170, 726, 783, 852
ApeKI GCWGC 2 cut(s) 683, 772
ApoI RAATTY 5 cut(s) 151, 246, 305, 802, 1112
ArsI GACNNNNNNTTYG 2 cut(s) 1082, 1114
Asp700I GAANNNNTTC 1 cut(s) 355
AspA2I CCTAGG 1 cut(s) 694
AspLEI GCGC 1 cut(s) 1042
AspS9I GGNCC 2 cut(s) 170, 784
AsuC2I CCSGG 1 cut(s) 1196
AsuHPI GGTGA 1 cut(s) 1019
AvrII CCTAGG 1 cut(s) 694
BaeI ACNNNNGTAYC 2 cut(s) 50, 83
BanII GRGCYC 1 cut(s) 44
BarI GAAGNNNNNNTAC 2 cut(s) 608, 640
BauI CACGAG 1 cut(s) 980
BbsI GAAGAC 1 cut(s) 1160
Bbv12I GWGCWC 1 cut(s) 981
BbvCI CCTCAGC 1 cut(s) 1002
BbvI GCAGC 2 cut(s) 695, 759
BceAI ACGGC 2 cut(s) 49, 821
BciT130I CCWGG 2 cut(s) 116, 1136
BcnI CCSGG 1 cut(s) 1196
BcoDI GTCTC 6 cut(s) 82, 230, 410, 437, 666, 749
BfaI CTAG 3 cut(s) 45, 665, 695
BfmI CTRYAG 1 cut(s) 215
BglII AGATCT 1 cut(s) 47
BisI GCNGC 2 cut(s) 684, 773
BlnI CCTAGG 1 cut(s) 694
BlpI GCTNAGC 1 cut(s) 975
BlsI GCNGC 2 cut(s) 685, 774
Bme1390I CCNGG 3 cut(s) 116, 1136, 1196
BmgT120I GGNCC 2 cut(s) 170, 784
BmrFI CCNGG 3 cut(s) 116, 1136, 1196
BmrI ACTGGG 1 cut(s) 662
BmsI GCATC 1 cut(s) 465
BmuI ACTGGG 1 cut(s) 662
BpiI GAAGAC 1 cut(s) 1160
Bpu10I CCTNAGC 2 cut(s) 1002, 1176
Bpu1102I GCTNAGC 1 cut(s) 975
BpuMI CCSGG 1 cut(s) 1196
BsaAI YACGTR 1 cut(s) 833
BsaBI GATNNNNATC 1 cut(s) 479
BsaHI GRCGYC 2 cut(s) 111, 322
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 4 cut(s) 166, 694, 1119, 1194
Bsc4I CCNNNNNNNGG 1 cut(s) 741
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 2 cut(s) 451, 657
Bse3DI GCAATG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 479
BseBI CCWGG 2 cut(s) 116, 1136
BseDI CCNNGG 4 cut(s) 166, 694, 1119, 1194
BseGI GGATG 3 cut(s) 340, 480, 496
BseJI GATNNNNATC 1 cut(s) 479
BseLI CCNNNNNNNGG 1 cut(s) 741
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 5 cut(s) 93, 380, 855, 966, 993
BseNI ACTGG 2 cut(s) 451, 657
BseXI GCAGC 2 cut(s) 695, 759
Bsh1236I CGCG 1 cut(s) 1042
BshFI GGCC 4 cut(s) 172, 728, 785, 854
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 2 cut(s) 536, 1196
BslFI GGGAC 2 cut(s) 669, 1137
BslI CCNNNNNNNGG 1 cut(s) 741
BsmAI GTCTC 6 cut(s) 82, 230, 410, 437, 666, 749
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 2 cut(s) 669, 1137
BsnI GGCC 4 cut(s) 172, 728, 785, 854
Bso31I GGTCTC 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 44, 981
Bsp1407I TGTACA 1 cut(s) 493
Bsp143I GATC 5 cut(s) 47, 88, 220, 385, 953
Bsp1720I GCTNAGC 1 cut(s) 975
BspACI CCGC 1 cut(s) 257
BspANI GGCC 4 cut(s) 172, 728, 785, 854
BspCNI CTCAG 5 cut(s) 92, 381, 856, 967, 994
BspFNI CGCG 1 cut(s) 1042
BspHI TCATGA 2 cut(s) 364, 439
BspPI GGATC 3 cut(s) 83, 228, 393
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 535
BsrGI TGTACA 1 cut(s) 493
BsrI ACTGG 2 cut(s) 451, 657
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 4 cut(s) 166, 694, 1119, 1194
BssMI GATC 5 cut(s) 47, 88, 220, 385, 953
BssNI GRCGYC 2 cut(s) 111, 322
BssSI CACGAG 1 cut(s) 980
BssT1I CCWWGG 3 cut(s) 166, 694, 1119
Bst2BI CACGAG 1 cut(s) 980
Bst2UI CCWGG 2 cut(s) 116, 1136
Bst4CI ACNGT 6 cut(s) 280, 629, 660, 795, 891, 1145
Bst6I CTCTTC 4 cut(s) 267, 408, 537, 1050
BstACI GRCGYC 2 cut(s) 111, 322
BstAUI TGTACA 1 cut(s) 493
BstBAI YACGTR 1 cut(s) 833
BstC8I GCNNGC 3 cut(s) 465, 621, 1132
BstDEI CTNAG 6 cut(s) 79, 389, 864, 975, 1002, 1176
BstF5I GGATG 3 cut(s) 340, 480, 496
BstFNI CGCG 1 cut(s) 1042
BstHHI GCGC 1 cut(s) 1042
BstKTI GATC 5 cut(s) 50, 91, 223, 388, 956
BstMAI GTCTC 6 cut(s) 82, 230, 410, 437, 666, 749
BstMBI GATC 5 cut(s) 47, 88, 220, 385, 953
BstMWI GCNNNNNNNGC 4 cut(s) 10, 860, 869, 1136
BstNI CCWGG 2 cut(s) 116, 1136
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 3 cut(s) 114, 1134, 1194
BstSFI CTRYAG 1 cut(s) 215
BstUI CGCG 1 cut(s) 1042
BstV1I GCAGC 2 cut(s) 695, 759
BstV2I GAAGAC 1 cut(s) 1160
BstX2I RGATCY 2 cut(s) 47, 385
BstXI CCANNNNNNTGG 1 cut(s) 471
BstYI RGATCY 2 cut(s) 47, 385
BsuRI GGCC 4 cut(s) 172, 728, 785, 854
BtsCI GGATG 3 cut(s) 340, 480, 496
BtsIMutI CAGTG 2 cut(s) 304, 896
Cac8I GCNNGC 3 cut(s) 465, 621, 1132
CaiI CAGNNNCTG 1 cut(s) 86
CciI TCATGA 2 cut(s) 364, 439
CfoI GCGC 1 cut(s) 1042
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 2 cut(s) 170, 784
CseI GACGC 3 cut(s) 100, 311, 1163
Csp6I GTAC 6 cut(s) 67, 238, 276, 494, 830, 985
CviAII CATG 6 cut(s) 365, 440, 620, 943, 1093, 1109
CviQI GTAC 6 cut(s) 67, 238, 276, 494, 830, 985
DdeI CTNAG 6 cut(s) 79, 389, 864, 975, 1002, 1176
DpnI GATC 5 cut(s) 49, 90, 222, 387, 955
DpnII GATC 5 cut(s) 47, 88, 220, 385, 953
Eam1104I CTCTTC 4 cut(s) 267, 408, 537, 1050
EarI CTCTTC 4 cut(s) 267, 408, 537, 1050
EciI GGCGGA 1 cut(s) 246
Eco130I CCWWGG 3 cut(s) 166, 694, 1119
Eco147I AGGCCT 1 cut(s) 728
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 82
Eco57I CTGAAG 2 cut(s) 356, 627
EcoRI GAATTC 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 114, 1134
EcoT14I CCWWGG 3 cut(s) 166, 694, 1119
EcoT22I ATGCAT 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 3 cut(s) 166, 694, 1119
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 6 cut(s) 368, 443, 623, 946, 1096, 1112
FaqI GGGAC 2 cut(s) 669, 1137
FatI CATG 6 cut(s) 364, 439, 619, 942, 1092, 1108
Fnu4HI GCNGC 2 cut(s) 684, 773
FokI GGATG 3 cut(s) 347, 487, 503
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 684, 773
FspBI CTAG 3 cut(s) 45, 665, 695
GlaI GCGC 1 cut(s) 1041
GluI GCNGC 2 cut(s) 684, 773
HaeIII GGCC 4 cut(s) 172, 728, 785, 854
HapII CCGG 2 cut(s) 536, 1196
HgaI GACGC 3 cut(s) 100, 311, 1163
HhaI GCGC 1 cut(s) 1042
Hin1I GRCGYC 2 cut(s) 111, 322
Hin1II CATG 6 cut(s) 368, 443, 623, 946, 1096, 1112
Hin6I GCGC 1 cut(s) 1040
HinP1I GCGC 1 cut(s) 1040
HincII GTYRAC 2 cut(s) 346, 948
HindII GTYRAC 2 cut(s) 346, 948
HinfI GANTC 2 cut(s) 545, 1184
HpaI GTTAAC 1 cut(s) 346
HpaII CCGG 2 cut(s) 536, 1196
HphI GGTGA 1 cut(s) 1019
Hpy166II GTNNAC 3 cut(s) 346, 896, 948
Hpy188I TCNGA 4 cut(s) 390, 524, 754, 958
Hpy188III TCNNGA 7 cut(s) 158, 266, 365, 440, 554, 932, 1073
Hpy8I GTNNAC 3 cut(s) 346, 896, 948
Hpy99I CGWCG 3 cut(s) 37, 58, 195
HpyAV CCTTC 4 cut(s) 406, 701, 913, 991
HpyCH4III ACNGT 6 cut(s) 280, 629, 660, 795, 891, 1145
HpyCH4IV ACGT 2 cut(s) 193, 832
HpyCH4V TGCA 5 cut(s) 478, 623, 775, 841, 1151
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 860, 869, 1136
HpyF3I CTNAG 6 cut(s) 79, 389, 864, 975, 1002, 1176
HpySE526I ACGT 2 cut(s) 193, 832
Hsp92I GRCGYC 2 cut(s) 111, 322
Hsp92II CATG 6 cut(s) 368, 443, 623, 946, 1096, 1112
HspAI GCGC 1 cut(s) 1040
KspAI GTTAAC 1 cut(s) 346
Kzo9I GATC 5 cut(s) 47, 88, 220, 385, 953
LmnI GCTCC 3 cut(s) 696, 698, 1196
Lsp1109I GCAGC 2 cut(s) 695, 759
LweI GCATC 1 cut(s) 465
MaeI CTAG 3 cut(s) 45, 665, 695
MaeII ACGT 2 cut(s) 193, 832
MaeIII GTNAC 3 cut(s) 57, 82, 194
MalI GATC 5 cut(s) 49, 90, 222, 387, 955
MboI GATC 5 cut(s) 47, 88, 220, 385, 953
MboII GAAGA 9 cut(s) 190, 254, 425, 475, 554, 821, 1035, 1067, 1160
MflI RGATCY 2 cut(s) 47, 385
MhlI GDGCHC 2 cut(s) 44, 981
MluCI AATT 8 cut(s) 98, 151, 246, 305, 765, 802, 909, 1112
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 1 cut(s) 732
MnlI CCTC 8 cut(s) 270, 312, 376, 420, 633, 775, 997, 1003
Mph1103I ATGCAT 1 cut(s) 625
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 7 cut(s) 345, 431, 456, 768, 797, 849, 912
MslI CAYNNNNRTG 1 cut(s) 314
MspI CCGG 2 cut(s) 536, 1196
MspR9I CCNGG 3 cut(s) 116, 1136, 1196
MvaI CCWGG 2 cut(s) 116, 1136
MvnI CGCG 1 cut(s) 1042
MwoI GCNNNNNNNGC 4 cut(s) 10, 860, 869, 1136
NciI CCSGG 1 cut(s) 1196
NdeII GATC 5 cut(s) 47, 88, 220, 385, 953
NlaIII CATG 6 cut(s) 368, 443, 623, 946, 1096, 1112
NmuCI GTSAC 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 625
NspI RCATGY 1 cut(s) 623
PaeI GCATGC 1 cut(s) 623
PagI TCATGA 2 cut(s) 364, 439
PceI AGGCCT 1 cut(s) 728
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 1184
PkrI GCNGC 2 cut(s) 685, 774
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
Ppu21I YACGTR 1 cut(s) 833
Psp6I CCWGG 2 cut(s) 114, 1134
PspGI CCWGG 2 cut(s) 114, 1134
PspPI GGNCC 2 cut(s) 170, 784
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 2 cut(s) 47, 385
RsaI GTAC 6 cut(s) 68, 239, 277, 495, 831, 986
RsaNI GTAC 6 cut(s) 67, 238, 276, 494, 830, 985
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 7 cut(s) 345, 431, 456, 768, 797, 849, 912
SatI GCNGC 2 cut(s) 684, 773
Sau3AI GATC 5 cut(s) 47, 88, 220, 385, 953
Sau96I GGNCC 2 cut(s) 170, 784
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 3 cut(s) 116, 1136, 1196
SduI GDGCHC 2 cut(s) 44, 981
SfaNI GCATC 1 cut(s) 465
SfcI CTRYAG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 314
SphI GCATGC 1 cut(s) 623
Sse9I AATT 8 cut(s) 98, 151, 246, 305, 765, 802, 909, 1112
SseBI AGGCCT 1 cut(s) 728
SsiI CCGC 1 cut(s) 257
SspMI CTAG 3 cut(s) 45, 665, 695
StuI AGGCCT 1 cut(s) 728
StyD4I CCNGG 3 cut(s) 114, 1134, 1194
StyI CCWWGG 3 cut(s) 166, 694, 1119
TaaI ACNGT 6 cut(s) 280, 629, 660, 795, 891, 1145
TaiI ACGT 2 cut(s) 196, 835
TaqI TCGA 2 cut(s) 190, 1182
TaqII GACCGA 1 cut(s) 64
TasI AATT 8 cut(s) 98, 151, 246, 305, 765, 802, 909, 1112
TatI WGTACW 3 cut(s) 237, 493, 984
TfiI GAWTC 1 cut(s) 1184
Tru1I TTAA 7 cut(s) 345, 431, 456, 768, 797, 849, 912
Tru9I TTAA 7 cut(s) 345, 431, 456, 768, 797, 849, 912
TscAI CASTG 2 cut(s) 304, 896
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 2 cut(s) 683, 772
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 6 cut(s) 298, 381, 426, 428, 815, 1125
TspGWI ACGGA 2 cut(s) 42, 281
TspRI CASTG 2 cut(s) 304, 896
XapI RAATTY 5 cut(s) 151, 246, 305, 802, 1112
XceI RCATGY 1 cut(s) 623
XmaJI CCTAGG 1 cut(s) 694
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 3 cut(s) 45, 665, 695
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.