Sorting nexin
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06140 |
| fragaria_vesca | FvH4_6g19390 FvH4_6g19390 FvH4_6g19390 |
| malus_domestica | MD12G1029600.v1.1 MD14G1029900.v1.1 |
| prunus_persica | Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 |
| pyrus_communis | pycom12g02800 pycom14g02770 |
| rosa_chinensis | RchiOBHm_Chr3g0474681 |
| rosa_laevigata | RLG00000023902 |
| rosa_multiflora | Rmu_sc0001126.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00406980 |
| rosa_rugosa | Rorug03G0142300.1 Rorug03G0142400 Rorug03G0142500.1 Rorug03G0142600 Rorug03G0142700 |
| rosa_samantha | Rh3AG192900 Rh3BG222800 Rh3CG217600 Rh3DG218700 |
| rosa_wichuraiana | Rw3G017590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 2 cut(s) | 123, 215 |
| BccI | CCATC | 1 cut(s) | 187 |
| BfaI | CTAG | 2 cut(s) | 54, 128 |
| BpmI | CTGGAG | 1 cut(s) | 203 |
| BsaJI | CCNNGG | 1 cut(s) | 60 |
| Bse1I | ACTGG | 1 cut(s) | 22 |
| BseDI | CCNNGG | 1 cut(s) | 60 |
| BseNI | ACTGG | 1 cut(s) | 22 |
| BsgI | GTGCAG | 1 cut(s) | 100 |
| BsrI | ACTGG | 1 cut(s) | 22 |
| BssECI | CCNNGG | 1 cut(s) | 60 |
| BssT1I | CCWWGG | 1 cut(s) | 60 |
| BstC8I | GCNNGC | 1 cut(s) | 97 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 78 |
| BtsI | GCAGTG | 1 cut(s) | 88 |
| BtsIMutI | CAGTG | 1 cut(s) | 88 |
| Cac8I | GCNNGC | 1 cut(s) | 97 |
| CviAII | CATG | 1 cut(s) | 76 |
| CviJI | RGCY | 3 cut(s) | 72, 131, 197 |
| CviKI_1 | RGCY | 3 cut(s) | 72, 131, 197 |
| Eco130I | CCWWGG | 1 cut(s) | 60 |
| EcoT14I | CCWWGG | 1 cut(s) | 60 |
| EcoT22I | ATGCAT | 1 cut(s) | 119 |
| ErhI | CCWWGG | 1 cut(s) | 60 |
| FaeI | CATG | 1 cut(s) | 79 |
| FaiI | YATR | 4 cut(s) | 77, 134, 179, 229 |
| FatI | CATG | 1 cut(s) | 75 |
| FspBI | CTAG | 2 cut(s) | 54, 128 |
| GsuI | CTGGAG | 1 cut(s) | 203 |
| Hin1II | CATG | 1 cut(s) | 79 |
| HinfI | GANTC | 2 cut(s) | 15, 211 |
| Hpy188I | TCNGA | 1 cut(s) | 192 |
| Hpy188III | TCNNGA | 1 cut(s) | 220 |
| HpyCH4V | TGCA | 3 cut(s) | 81, 99, 117 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 78 |
| Hsp92II | CATG | 1 cut(s) | 79 |
| LmnI | GCTCC | 1 cut(s) | 86 |
| LpnPI | CCDG | 1 cut(s) | 35 |
| MaeI | CTAG | 2 cut(s) | 54, 128 |
| MboII | GAAGA | 1 cut(s) | 10 |
| MfeI | CAATTG | 1 cut(s) | 90 |
| MluCI | AATT | 2 cut(s) | 90, 183 |
| MnlI | CCTC | 3 cut(s) | 58, 58, 62 |
| Mph1103I | ATGCAT | 1 cut(s) | 119 |
| MseI | TTAA | 1 cut(s) | 144 |
| MunI | CAATTG | 1 cut(s) | 90 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 78 |
| NlaIII | CATG | 1 cut(s) | 79 |
| NsiI | ATGCAT | 1 cut(s) | 119 |
| PfeI | GAWTC | 2 cut(s) | 15, 211 |
| SaqAI | TTAA | 1 cut(s) | 144 |
| SetI | ASST | 1 cut(s) | 13 |
| SgeI | CNNG | 9 cut(s) | 34, 66, 73, 88, 108, 140, 166, 181, 215 |
| Sse9I | AATT | 2 cut(s) | 90, 183 |
| SspMI | CTAG | 2 cut(s) | 54, 128 |
| StyI | CCWWGG | 1 cut(s) | 60 |
| TasI | AATT | 2 cut(s) | 90, 183 |
| TfiI | GAWTC | 2 cut(s) | 15, 211 |
| Tru1I | TTAA | 1 cut(s) | 144 |
| Tru9I | TTAA | 1 cut(s) | 144 |
| TscAI | CASTG | 1 cut(s) | 88 |
| TspDTI | ATGAA | 3 cut(s) | 64, 130, 176 |
| TspGWI | ACGGA | 1 cut(s) | 30 |
| TspRI | CASTG | 1 cut(s) | 88 |
| XspI | CTAG | 2 cut(s) | 54, 128 |
| Zsp2I | ATGCAT | 1 cut(s) | 119 |