AT5G06370

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011263
Physical Location & Seq
Reverse (-)
1947005 .. 1948612
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06370.1

Sequence Viewer

Length: 780 bp
ATGGGTCTTCTCTCCAACAGAATCGATAGATCGAGTTTGAAACCTGGAGATCATATCTACTCCTGGAGGACTGCTTACATCTATGCCCATCACGGCATCTATGTTGGAGATGATAGAGTCATCCATTTCACTAGACGAGGCCAAGAAGTTGGAACCGGGACTGTTCTAGATCTCATACTAGTCAGCTCAGGTCCATCCCGAAACCACACCCACTGTCCAACCTGTGTTCCACCTAACGAAGGTCACGGTGTTGTTTCCTCATGCCTTAACTGTTTCCTAGCCGGTGGTGTCTTGTACCGGTTTGAGTACTCAGTCAACGCTGCTCACTTCCTCGTCAAAGCCAGAGGAGGAACTTGCACACTCGCTGTCGCTGACCCTAATGAGATTGTTGTTCACCGGGCCAAACACCTCCTTCAAAACGGATTTGGATGTTATGACGTTTTCAAGAACAACTGTGAGGATTTCGCTATATATTGCAAAACCGCATTGCTGGTTCTTGAGGGAAGGACAATGGGACAGAGCGGTCAGGCGGTTTCGATTATAGGTGGGCCGATTGCTGCGGTTTTGTCCACGCCAATGCGGCTTCTGACTACAAACGTGTATGGGATGGCTGCTACAGCGATTGGTGTGTATTGTGCGAGTAGATACGCTACTGATATCGGAATGAGAGCTGACGTCGCGAAAGTTGAAGCAGAGGACCTCACAAGAAGGCTGTCTTCAGGACTTTTCCAAGTACTTGATCCTCCATTGGCAGCCATAGCTTTACCAAGCACGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

259

Amino Acids

27.85

Weight (kDa)

8.08

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 12 - 162 1e-27 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06370
fragaria_vesca FvH4_6g20310 FvH4_6g20310 FvH4_6g20310
malus_domestica MD14G1039000.v1.1
prunus_persica Prupe.7G094600_v2.0.a1
pyrus_communis pycom14g03350
rosa_chinensis RchiOBHm_Chr3g0475931
rosa_laevigata RLG00000023799
rosa_multiflora Rmu_co8434183.1_g000001 Rmu_sc0000596.1_g000004 Rmu_sc0009168.1_g000002
rosa_roxburghii Rroxscaffold_6G00405720
rosa_rugosa Rorug03G0151900 Rorug03G0152000
rosa_samantha Rh3AG202900 Rh3BG232700 Rh3CG228200 Rh3DG228400
rosa_wichuraiana Rw3G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 522
AatII GACGTC 1 cut(s) 678
AccBSI CCGCTC 1 cut(s) 522
AccII CGCG 1 cut(s) 680
AciI CCGC 5 cut(s) 483, 522, 530, 560, 580
AclWI GGATC 1 cut(s) 734
AcuI CTGAAG 1 cut(s) 702
AcyI GRCGYC 1 cut(s) 675
AfaI GTAC 3 cut(s) 296, 308, 735
AfiI CCNNNNNNNGG 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 597
AgeI ACCGGT 1 cut(s) 297
AgsI TTSAA 4 cut(s) 40, 416, 445, 689
AhlI ACTAGT 1 cut(s) 178
AjnI CCWGG 2 cut(s) 43, 62
AluBI AGCT 3 cut(s) 186, 671, 761
AluI AGCT 3 cut(s) 186, 671, 761
AlwI GGATC 1 cut(s) 734
AoxI GGCC 3 cut(s) 139, 399, 548
ApeKI GCWGC 4 cut(s) 320, 557, 611, 752
AsiGI ACCGGT 1 cut(s) 297
AspS9I GGNCC 4 cut(s) 191, 399, 548, 697
AsuC2I CCSGG 2 cut(s) 157, 398
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 2 cut(s) 191, 697
BauI CACGAG 1 cut(s) 772
BbsI GAAGAC 1 cut(s) 708
BbvI GCAGC 4 cut(s) 307, 544, 598, 764
BccI CCATC 3 cut(s) 96, 202, 601
BceAI ACGGC 1 cut(s) 109
BciT130I CCWGG 2 cut(s) 45, 64
BcnI CCSGG 2 cut(s) 157, 398
BcuI ACTAGT 1 cut(s) 178
BfaI CTAG 4 cut(s) 132, 167, 179, 278
BfmI CTRYAG 1 cut(s) 615
BglI GCCNNNNNGGC 1 cut(s) 580
BglII AGATCT 1 cut(s) 169
BisI GCNGC 5 cut(s) 321, 558, 581, 612, 753
BlsI GCNGC 5 cut(s) 322, 559, 582, 613, 754
BmcAI AGTACT 2 cut(s) 308, 735
Bme1390I CCNGG 4 cut(s) 45, 64, 157, 398
Bme18I GGWCC 2 cut(s) 191, 697
BmgT120I GGNCC 4 cut(s) 191, 399, 548, 697
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 4 cut(s) 45, 64, 157, 398
BmsI GCATC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 708
BpmI CTGGAG 2 cut(s) 66, 85
Bpu10I CCTNAGC 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 518
BpuMI CCSGG 2 cut(s) 157, 398
Bsa29I ATCGAT 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 675
BsaWI WCCGGW 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 2 cut(s) 281, 297
Bse3DI GCAATG 1 cut(s) 485
BseBI CCWGG 2 cut(s) 45, 64
BseCI ATCGAT 1 cut(s) 24
BseGI GGATG 4 cut(s) 120, 194, 434, 612
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 485
BseMII CTCAG 2 cut(s) 201, 324
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 4 cut(s) 307, 544, 598, 764
Bsh1236I CGCG 1 cut(s) 680
BshFI GGCC 3 cut(s) 141, 401, 550
BshTI ACCGGT 1 cut(s) 297
BshVI ATCGAT 1 cut(s) 24
BsiSI CCGG 4 cut(s) 156, 282, 298, 397
BslFI GGGAC 2 cut(s) 172, 528
BslI CCNNNNNNNGG 1 cut(s) 239
BsmFI GGGAC 2 cut(s) 172, 528
BsnI GGCC 3 cut(s) 141, 401, 550
Bsp143I GATC 4 cut(s) 29, 49, 169, 739
Bsp68I TCGCGA 1 cut(s) 680
BspACI CCGC 5 cut(s) 483, 522, 530, 560, 580
BspANI GGCC 3 cut(s) 141, 401, 550
BspCNI CTCAG 2 cut(s) 200, 323
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 1 cut(s) 680
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 1 cut(s) 734
BsrBI CCGCTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 485
BsrFI RCCGGY 2 cut(s) 281, 297
BssAI RCCGGY 2 cut(s) 281, 297
BssMI GATC 4 cut(s) 29, 49, 169, 739
BssNI GRCGYC 1 cut(s) 675
BssSI CACGAG 1 cut(s) 772
Bst2BI CACGAG 1 cut(s) 772
Bst2UI CCWGG 2 cut(s) 45, 64
Bst4CI ACNGT 5 cut(s) 163, 215, 248, 272, 455
BstACI GRCGYC 1 cut(s) 675
BstDEI CTNAG 2 cut(s) 187, 310
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 4 cut(s) 120, 194, 434, 612
BstFNI CGCG 1 cut(s) 680
BstKTI GATC 4 cut(s) 32, 52, 172, 742
BstMBI GATC 4 cut(s) 29, 49, 169, 739
BstMWI GCNNNNNNNGC 4 cut(s) 580, 617, 677, 758
BstNI CCWGG 2 cut(s) 45, 64
BstSCI CCNGG 4 cut(s) 43, 62, 155, 396
BstSFI CTRYAG 1 cut(s) 615
BstUI CGCG 1 cut(s) 680
BstV1I GCAGC 4 cut(s) 307, 544, 598, 764
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 169
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 3 cut(s) 141, 401, 550
BsuTUI ATCGAT 1 cut(s) 24
BtsCI GGATG 4 cut(s) 120, 194, 434, 612
BtsIMutI CAGTG 1 cut(s) 211
BtuMI TCGCGA 1 cut(s) 680
Cfr10I RCCGGY 2 cut(s) 281, 297
Cfr13I GGNCC 4 cut(s) 191, 399, 548, 697
ClaI ATCGAT 1 cut(s) 24
Csp6I GTAC 3 cut(s) 295, 307, 734
CspAI ACCGGT 1 cut(s) 297
CviAII CATG 1 cut(s) 261
CviQI GTAC 3 cut(s) 295, 307, 734
DdeI CTNAG 2 cut(s) 187, 310
DpnI GATC 4 cut(s) 31, 51, 171, 741
DpnII GATC 4 cut(s) 29, 49, 169, 739
DrdI GACNNNNNNGTC 1 cut(s) 522
DseDI GACNNNNNNGTC 1 cut(s) 522
Eco32I GATATC 1 cut(s) 658
Eco47I GGWCC 2 cut(s) 191, 697
Eco57I CTGAAG 1 cut(s) 702
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 697
EcoRII CCWGG 2 cut(s) 43, 62
EcoRV GATATC 1 cut(s) 658
FaeI CATG 1 cut(s) 264
FalI AAGNNNNNCTT 2 cut(s) 700, 732
FaqI GGGAC 2 cut(s) 172, 528
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 5 cut(s) 321, 558, 581, 612, 753
FokI GGATG 4 cut(s) 107, 181, 441, 619
Fsp4HI GCNGC 5 cut(s) 321, 558, 581, 612, 753
FspBI CTAG 4 cut(s) 132, 167, 179, 278
GluI GCNGC 5 cut(s) 321, 558, 581, 612, 753
GsuI CTGGAG 2 cut(s) 66, 85
HaeIII GGCC 3 cut(s) 141, 401, 550
HapII CCGG 4 cut(s) 156, 282, 298, 397
Hin1I GRCGYC 1 cut(s) 675
Hin1II CATG 1 cut(s) 264
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 2 cut(s) 21, 117
HpaII CCGG 4 cut(s) 156, 282, 298, 397
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 3 cut(s) 316, 394, 570
Hpy188I TCNGA 2 cut(s) 588, 662
Hpy188III TCNNGA 6 cut(s) 167, 198, 445, 497, 679, 720
Hpy8I GTNNAC 3 cut(s) 316, 394, 570
Hpy99I CGWCG 1 cut(s) 680
HpyAV CCTTC 4 cut(s) 233, 422, 498, 702
HpyCH4III ACNGT 5 cut(s) 163, 215, 248, 272, 455
HpyCH4IV ACGT 3 cut(s) 438, 597, 675
HpyCH4V TGCA 2 cut(s) 357, 477
HpyF10VI GCNNNNNNNGC 4 cut(s) 580, 617, 677, 758
HpyF3I CTNAG 2 cut(s) 187, 310
HpySE526I ACGT 3 cut(s) 438, 597, 675
Hsp92I GRCGYC 1 cut(s) 675
Hsp92II CATG 1 cut(s) 264
Kzo9I GATC 4 cut(s) 29, 49, 169, 739
Lsp1109I GCAGC 4 cut(s) 307, 544, 598, 764
LweI GCATC 1 cut(s) 105
MaeI CTAG 4 cut(s) 132, 167, 179, 278
MaeII ACGT 3 cut(s) 438, 597, 675
MaeIII GTNAC 1 cut(s) 242
MalI GATC 4 cut(s) 31, 51, 171, 741
MbiI CCGCTC 1 cut(s) 522
MboI GATC 4 cut(s) 29, 49, 169, 739
MboII GAAGA 1 cut(s) 708
MflI RGATCY 1 cut(s) 169
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 4 cut(s) 39, 85, 130, 242
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 575
MspI CCGG 4 cut(s) 156, 282, 298, 397
MspR9I CCNGG 4 cut(s) 45, 64, 157, 398
MvaI CCWGG 2 cut(s) 45, 64
MvnI CGCG 1 cut(s) 680
MwoI GCNNNNNNNGC 4 cut(s) 580, 617, 677, 758
NciI CCSGG 2 cut(s) 157, 398
NdeII GATC 4 cut(s) 29, 49, 169, 739
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 242
NruI TCGCGA 1 cut(s) 680
PfeI GAWTC 1 cut(s) 21
PfoI TCCNGGA 1 cut(s) 62
PinAI ACCGGT 1 cut(s) 297
PkrI GCNGC 5 cut(s) 322, 559, 582, 613, 754
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 697
Psp5II RGGWCCY 1 cut(s) 697
Psp6I CCWGG 2 cut(s) 43, 62
PspGI CCWGG 2 cut(s) 43, 62
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 4 cut(s) 191, 399, 548, 697
PspPPI RGGWCCY 1 cut(s) 697
PsuI RGATCY 1 cut(s) 169
RruI TCGCGA 1 cut(s) 680
RsaI GTAC 3 cut(s) 296, 308, 735
RsaNI GTAC 3 cut(s) 295, 307, 734
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 5 cut(s) 321, 558, 581, 612, 753
Sau3AI GATC 4 cut(s) 29, 49, 169, 739
Sau96I GGNCC 4 cut(s) 191, 399, 548, 697
ScaI AGTACT 2 cut(s) 308, 735
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 4 cut(s) 45, 64, 157, 398
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 615
SinI GGWCC 2 cut(s) 191, 697
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
SpeI ACTAGT 1 cut(s) 178
SsiI CCGC 5 cut(s) 483, 522, 530, 560, 580
SspMI CTAG 4 cut(s) 132, 167, 179, 278
StyD4I CCNGG 4 cut(s) 43, 62, 155, 396
TaaI ACNGT 5 cut(s) 163, 215, 248, 272, 455
TaiI ACGT 3 cut(s) 441, 600, 678
TaqI TCGA 3 cut(s) 24, 32, 536
TatI WGTACW 2 cut(s) 306, 733
TauI GCSGC 1 cut(s) 583
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 218
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 4 cut(s) 320, 557, 611, 752
Tsp45I GTSAC 1 cut(s) 242
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 191, 697
XagI CCTNNNNNAGG 1 cut(s) 237
XbaI TCTAGA 1 cut(s) 166
XspI CTAG 4 cut(s) 132, 167, 179, 278
ZraI GACGTC 1 cut(s) 676
ZrmI AGTACT 2 cut(s) 308, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.