Rmu_sc0000596.1_g000004

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000596.1
OG0011263
Physical Location & Seq
Forward (+)
13439 .. 17348
3910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000596.1_g000004.1.cds

Sequence Viewer

Length: 861 bp
atggggctgctctccaacagagtggctaagggaagcctcaaaccaggggatcacatctactcttggaggactgcttatatctatgcccatcatggcatctatattggggatgacaaagtcattcatttcaccagacgtggccaagaagtaggaactgggacagtgttggatgttctcttggttagctcaggaccagtccgacctcaacagccctgcgaagtgtgcactccacgggaagagaacagtggggttctctgctcatgcttgaactgctttcttgcagggggtgtcttgtaccgttttgaatattctgtcaaccctgccctatttctggcaaaagcccggggaggaacgtgcaccctggcagtgtcggactcggatgatattgtggtccatcgagcaaaatacctgcttgaaaatggctttggttgctattgcatatttaagagcaattgtgaagacttcgctatttattgcaaaaccgggctgcttgttatggatcaaagaacattagggcaaagtggtcaagcagcatctataatagggggacctcttgcagccgttttagcaacaccactgcgtcttgtcaccaccaacgtttatgggatggtagctgtaggcattggagtatactgtgctagtaggtacggtgctgacattggcaagaggattgatgttgtgaaggtgtctgtggaggatatgacaaggagacttgcagctggctcgctccaggtggtagaggccgaaatctcagctcccttgctccaggcgcccgagtcccaaatctctgcgccccctacaagaggttcttccaaccttttcttctggtcaagaagtccttccaaccttgtcactcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

286

Amino Acids

30.75

Weight (kDa)

8.26

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06370
fragaria_vesca FvH4_6g20310 FvH4_6g20310 FvH4_6g20310
malus_domestica MD14G1039000.v1.1
prunus_persica Prupe.7G094600_v2.0.a1
pyrus_communis pycom14g03350
rosa_chinensis RchiOBHm_Chr3g0475931
rosa_laevigata RLG00000023799
rosa_multiflora Rmu_co8434183.1_g000001 Rmu_sc0000596.1_g000004 Rmu_sc0009168.1_g000002
rosa_roxburghii Rroxscaffold_6G00405720
rosa_rugosa Rorug03G0151900 Rorug03G0152000
rosa_samantha Rh3AG202900 Rh3BG232700 Rh3CG228200 Rh3DG228400
rosa_wichuraiana Rw3G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 769
AccI GTMKAC 1 cut(s) 630
AclI AACGTT 1 cut(s) 597
AclWI GGATC 2 cut(s) 57, 507
AcoI YGGCCR 1 cut(s) 139
AcyI GRCGYC 1 cut(s) 770
AfaI GTAC 2 cut(s) 296, 647
AfiI CCNNNNNNNGG 2 cut(s) 331, 803
AgsI TTSAA 3 cut(s) 268, 305, 416
AjiI CACGTC 1 cut(s) 137
AjnI CCWGG 4 cut(s) 43, 360, 729, 765
AjuI GAANNNNNNNTTGG 4 cut(s) 408, 440, 806, 838
AluBI AGCT 4 cut(s) 186, 614, 719, 755
AluI AGCT 4 cut(s) 186, 614, 719, 755
Alw21I GWGCWC 2 cut(s) 227, 359
Alw26I GTCTC 1 cut(s) 703
Alw44I GTGCAC 2 cut(s) 223, 355
AlwI GGATC 2 cut(s) 57, 507
Ama87I CYCGRG 2 cut(s) 342, 773
AoxI GGCC 2 cut(s) 139, 741
ApaLI GTGCAC 2 cut(s) 223, 355
ApeKI GCWGC 5 cut(s) 7, 487, 530, 557, 716
Asp700I GAANNNNTTC 1 cut(s) 838
AspLEI GCGC 2 cut(s) 772, 793
AspS9I GGNCC 3 cut(s) 191, 391, 548
AsuC2I CCSGG 3 cut(s) 343, 344, 484
AsuHPI GGTGA 2 cut(s) 121, 580
AvaI CYCGRG 2 cut(s) 342, 773
AvaII GGWCC 3 cut(s) 191, 391, 548
BaeGI GKGCMC 2 cut(s) 227, 359
BalI TGGCCA 1 cut(s) 141
BanI GGYRCC 1 cut(s) 769
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 227, 359
BbvI GCAGC 4 cut(s) 474, 542, 569, 728
BccI CCATC 3 cut(s) 96, 402, 601
BceAI ACGGC 1 cut(s) 545
BcgI CGANNNNNNTGC 2 cut(s) 705, 739
BciT130I CCWGG 4 cut(s) 45, 362, 731, 767
BcnI CCSGG 3 cut(s) 343, 344, 484
BcoDI GTCTC 1 cut(s) 703
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 1 cut(s) 773
BfuAI ACCTGC 1 cut(s) 417
BisI GCNGC 5 cut(s) 8, 488, 531, 558, 717
BlsI GCNGC 5 cut(s) 9, 489, 532, 559, 718
Bme1390I CCNGG 7 cut(s) 45, 343, 344, 362, 484, 731, 767
Bme18I GGWCC 3 cut(s) 191, 391, 548
BmeT110I CYCGRG 2 cut(s) 342, 773
BmgBI CACGTC 1 cut(s) 137
BmgT120I GGNCC 3 cut(s) 191, 391, 548
BmiI GGNNCC 2 cut(s) 549, 771
BmrFI CCNGG 7 cut(s) 45, 343, 344, 362, 484, 731, 767
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 105, 542
BmuI ACTGGG 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 2 cut(s) 713, 749
Bpu10I CCTNAGC 2 cut(s) 27, 187
BpuMI CCSGG 3 cut(s) 343, 344, 484
BsaHI GRCGYC 1 cut(s) 770
BsaJI CCNNGG 5 cut(s) 44, 230, 342, 343, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 803
Bse1I ACTGG 2 cut(s) 160, 194
BseBI CCWGG 4 cut(s) 45, 362, 731, 767
BseDI CCNNGG 5 cut(s) 44, 230, 342, 343, 360
BseGI GGATG 4 cut(s) 115, 175, 385, 612
BseLI CCNNNNNNNGG 2 cut(s) 331, 803
BseMII CTCAG 2 cut(s) 201, 765
BseNI ACTGG 2 cut(s) 160, 194
BseSI GKGCMC 2 cut(s) 227, 359
BseXI GCAGC 4 cut(s) 474, 542, 569, 728
BshFI GGCC 2 cut(s) 141, 743
BshNI GGYRCC 1 cut(s) 769
BsiHKAI GWGCWC 2 cut(s) 227, 359
BsiHKCI CYCGRG 2 cut(s) 342, 773
BsiSI CCGG 2 cut(s) 343, 483
BslFI GGGAC 3 cut(s) 172, 561, 763
BslI CCNNNNNNNGG 2 cut(s) 331, 803
BsmAI GTCTC 1 cut(s) 703
BsmFI GGGAC 3 cut(s) 172, 561, 763
BsnI GGCC 2 cut(s) 141, 743
BsoBI CYCGRG 2 cut(s) 342, 773
Bsp1286I GDGCHC 2 cut(s) 227, 359
Bsp143I GATC 2 cut(s) 49, 499
BspANI GGCC 2 cut(s) 141, 743
BspCNI CTCAG 2 cut(s) 200, 764
BspLI GGNNCC 2 cut(s) 549, 771
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 57, 507
BspT107I GGYRCC 1 cut(s) 769
BsrI ACTGG 2 cut(s) 160, 194
BssECI CCNNGG 5 cut(s) 44, 230, 342, 343, 360
BssMI GATC 2 cut(s) 49, 499
BssNAI GTATAC 1 cut(s) 631
BssNI GRCGYC 1 cut(s) 770
Bst1107I GTATAC 1 cut(s) 631
Bst2UI CCWGG 4 cut(s) 45, 362, 731, 767
Bst4CI ACNGT 5 cut(s) 163, 245, 299, 635, 650
Bst6I CTCTTC 1 cut(s) 231
BstACI GRCGYC 1 cut(s) 770
BstC8I GCNNGC 2 cut(s) 721, 725
BstDEI CTNAG 4 cut(s) 27, 187, 751, 855
BstDSI CCRYGG 1 cut(s) 230
BstENI CCTNNNNNAGG 1 cut(s) 801
BstF5I GGATG 4 cut(s) 115, 175, 385, 612
BstH2I RGCGCY 1 cut(s) 773
BstHHI GCGC 2 cut(s) 772, 793
BstKTI GATC 2 cut(s) 52, 502
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 2 cut(s) 49, 499
BstMWI GCNNNNNNNGC 5 cut(s) 222, 270, 429, 566, 769
BstNI CCWGG 4 cut(s) 45, 362, 731, 767
BstSCI CCNGG 7 cut(s) 43, 341, 342, 360, 482, 729, 765
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 2 cut(s) 227, 359
BstV1I GCAGC 4 cut(s) 474, 542, 569, 728
BstV2I GAAGAC 1 cut(s) 465
BstXI CCANNNNNNTGG 1 cut(s) 22
BstZ17I GTATAC 1 cut(s) 631
BsuRI GGCC 2 cut(s) 141, 743
BtgI CCRYGG 1 cut(s) 230
BtrI CACGTC 1 cut(s) 137
BtsCI GGATG 4 cut(s) 115, 175, 385, 612
BtsI GCAGTG 2 cut(s) 372, 575
BtsIMutI CAGTG 4 cut(s) 168, 250, 372, 575
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 721, 725
CfoI GCGC 2 cut(s) 772, 793
Cfr13I GGNCC 3 cut(s) 191, 391, 548
Cfr9I CCCGGG 1 cut(s) 342
CseI GACGC 1 cut(s) 569
Csp6I GTAC 2 cut(s) 295, 646
CviAII CATG 2 cut(s) 92, 261
CviQI GTAC 2 cut(s) 295, 646
DdeI CTNAG 4 cut(s) 27, 187, 751, 855
DinI GGCGCC 1 cut(s) 771
DpnI GATC 2 cut(s) 51, 501
DpnII GATC 2 cut(s) 49, 499
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco47I GGWCC 3 cut(s) 191, 391, 548
Eco88I CYCGRG 2 cut(s) 342, 773
EcoNI CCTNNNNNAGG 1 cut(s) 801
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 4 cut(s) 43, 360, 729, 765
EgeI GGCGCC 1 cut(s) 771
EheI GGCGCC 1 cut(s) 771
FaeI CATG 2 cut(s) 95, 264
FalI AAGNNNNNCTT 4 cut(s) 793, 825, 823, 855
FaqI GGGAC 3 cut(s) 172, 561, 763
FatI CATG 2 cut(s) 91, 260
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 5 cut(s) 8, 488, 531, 558, 717
FokI GGATG 4 cut(s) 122, 182, 392, 619
Fsp4HI GCNGC 5 cut(s) 8, 488, 531, 558, 717
FspBI CTAG 1 cut(s) 639
GlaI GCGC 2 cut(s) 771, 792
GluI GCNGC 5 cut(s) 8, 488, 531, 558, 717
GsuI CTGGAG 2 cut(s) 713, 749
HaeII RGCGCY 1 cut(s) 773
HaeIII GGCC 2 cut(s) 141, 743
HapII CCGG 2 cut(s) 343, 483
HgaI GACGC 1 cut(s) 569
HhaI GCGC 2 cut(s) 772, 793
Hin1I GRCGYC 1 cut(s) 770
Hin1II CATG 2 cut(s) 95, 264
Hin6I GCGC 2 cut(s) 770, 791
HinP1I GCGC 2 cut(s) 770, 791
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 2 cut(s) 374, 776
HpaII CCGG 2 cut(s) 343, 483
HphI GGTGA 2 cut(s) 121, 580
Hpy166II GTNNAC 4 cut(s) 225, 316, 357, 631
Hpy188I TCNGA 3 cut(s) 200, 373, 379
Hpy188III TCNNGA 2 cut(s) 189, 831
Hpy8I GTNNAC 4 cut(s) 225, 316, 357, 631
HpyAV CCTTC 2 cut(s) 676, 849
HpyCH4III ACNGT 5 cut(s) 163, 245, 299, 635, 650
HpyCH4IV ACGT 3 cut(s) 136, 353, 597
HpyCH4V TGCA 7 cut(s) 225, 281, 357, 438, 477, 557, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 270, 429, 566, 769
HpyF3I CTNAG 4 cut(s) 27, 187, 751, 855
HpySE526I ACGT 3 cut(s) 136, 353, 597
Hsp92I GRCGYC 1 cut(s) 770
Hsp92II CATG 2 cut(s) 95, 264
HspAI GCGC 2 cut(s) 770, 791
KasI GGCGCC 1 cut(s) 769
Kzo9I GATC 2 cut(s) 49, 499
LmnI GCTCC 3 cut(s) 732, 760, 768
Lsp1109I GCAGC 4 cut(s) 474, 542, 569, 728
LweI GCATC 2 cut(s) 105, 542
MaeI CTAG 1 cut(s) 639
MaeII ACGT 3 cut(s) 136, 353, 597
MaeIII GTNAC 2 cut(s) 586, 850
MalI GATC 2 cut(s) 51, 501
MboI GATC 2 cut(s) 49, 499
MboII GAAGA 4 cut(s) 248, 470, 801, 814
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 227, 359
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 1 cut(s) 451
MluNI TGGCCA 1 cut(s) 141
Mly113I GGCGCC 1 cut(s) 770
MlyI GAGTC 2 cut(s) 368, 785
MmeI TCCRAC 5 cut(s) 39, 147, 223, 351, 837
MnlI CCTC 9 cut(s) 47, 60, 213, 341, 561, 660, 688, 733, 797
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 838
MscI TGGCCA 1 cut(s) 141
MseI TTAA 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 2 cut(s) 343, 483
MspR9I CCNGG 7 cut(s) 45, 343, 344, 362, 484, 731, 767
MunI CAATTG 1 cut(s) 451
MvaI CCWGG 4 cut(s) 45, 362, 731, 767
MwoI GCNNNNNNNGC 5 cut(s) 222, 270, 429, 566, 769
NarI GGCGCC 1 cut(s) 770
NciI CCSGG 3 cut(s) 343, 344, 484
NdeII GATC 2 cut(s) 49, 499
NlaIII CATG 2 cut(s) 95, 264
NlaIV GGNNCC 2 cut(s) 549, 771
NmuCI GTSAC 2 cut(s) 586, 850
PdmI GAANNNNTTC 1 cut(s) 838
PflFI GACNNNGTC 1 cut(s) 116
PkrI GCNGC 5 cut(s) 9, 489, 532, 559, 718
PleI GAGTC 2 cut(s) 368, 784
PluTI GGCGCC 1 cut(s) 773
PpsI GAGTC 2 cut(s) 368, 784
PpuMI RGGWCCY 1 cut(s) 548
Psp1406I AACGTT 1 cut(s) 597
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 4 cut(s) 43, 360, 729, 765
PspGI CCWGG 4 cut(s) 43, 360, 729, 765
PspN4I GGNNCC 2 cut(s) 549, 771
PspPI GGNCC 3 cut(s) 191, 391, 548
PspPPI RGGWCCY 1 cut(s) 548
PsyI GACNNNGTC 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 2 cut(s) 296, 647
RsaNI GTAC 2 cut(s) 295, 646
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 5 cut(s) 8, 488, 531, 558, 717
Sau3AI GATC 2 cut(s) 49, 499
Sau96I GGNCC 3 cut(s) 191, 391, 548
SchI GAGTC 2 cut(s) 368, 785
ScrFI CCNGG 7 cut(s) 45, 343, 344, 362, 484, 731, 767
SduI GDGCHC 2 cut(s) 227, 359
SfaNI GCATC 2 cut(s) 105, 542
SfcI CTRYAG 1 cut(s) 615
SfoI GGCGCC 1 cut(s) 771
SinI GGWCC 3 cut(s) 191, 391, 548
SmaI CCCGGG 1 cut(s) 344
Sse9I AATT 1 cut(s) 451
SspDI GGCGCC 1 cut(s) 769
SspI AATATT 1 cut(s) 308
SspMI CTAG 1 cut(s) 639
StyD4I CCNGG 7 cut(s) 43, 341, 342, 360, 482, 729, 765
TaaI ACNGT 5 cut(s) 163, 245, 299, 635, 650
TaiI ACGT 3 cut(s) 139, 356, 600
TaqI TCGA 1 cut(s) 397
TasI AATT 1 cut(s) 451
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 4 cut(s) 168, 250, 372, 582
TseFI GTSAC 2 cut(s) 586, 850
TseI GCWGC 5 cut(s) 7, 487, 530, 557, 716
Tsp45I GTSAC 2 cut(s) 586, 850
TspDTI ATGAA 1 cut(s) 113
TspMI CCCGGG 1 cut(s) 342
TspRI CASTG 4 cut(s) 168, 250, 372, 582
Tth111I GACNNNGTC 1 cut(s) 116
VneI GTGCAC 2 cut(s) 223, 355
VpaK11BI GGWCC 3 cut(s) 191, 391, 548
XagI CCTNNNNNAGG 1 cut(s) 801
XmaI CCCGGG 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 838
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.