Rroxscaffold_6G00405720

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011263
Physical Location & Seq
Forward (+)
28177110 .. 28181411
4302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405720.1

Sequence Viewer

Length: 933 bp
ATGGGGCTGCTCTCCAACAGAGTGGCTAAGGGAAGCCTTAAACCAGGGGATCACATCTACTCTTGGAGGACTGCTTATATCTATGCCCATCATGGCATCTATATTGGGGATGACAAAGTCATTCATTTCACCAGACGTGGCCAAGAAGTAGGAACTGGGACAGTGTTGGATGTTCTCTTGGTTAGCTCAGGACCAGTCCAACCTCAACAGCCCTGCGAAGTCTGCACTCCACGGGAAGAGAACAGTGGGGTTCTCTGCTCATGCTTGAACTGCTTTCTTGCAGGGGGTGTCTTGTACCGTTTTGAATATTCTGTCAACCCTGCCCTATTTCTGGCAAAAGCCCGGGGAGGAACGTGCACCCTTGCAGTGTCGGACTCAGATGATATTGTGGTCCATCGAGCAAAATACCTGCTTGAAAATGGCTTCGGTTGCTATTGCATATTTAAAAACAATTGTGAAGACTTCGCTATTTATTGCAAAACCGGGCTGCTTGTTATGGATCAAAGAACATTAGGGCAAAGTGGTCAAGCAGCATCTATAATAGGGGGACCTCTTGCAGCCGTTTTAGCAACACCGCTGCGTCTTGTCACCACCAACATTTATGGCATGGTAGCTGTAGGCATTGGAGTATACTGTGCTAGTAGGTACACTGCTGACATTGGCAAGAGGATTGATGTTGTGAAGATGTCTGTGGAGGATATGACAAGGAGACTTGCAGCTGGCTCGCTCCAGGTGGTGGAGGCCCAAATCTCAGCTCCCTTGCTCCAAGCACCCGAGTCCCAAATCTCAGCTCCCTTGCTCCAGGCACCCGAGTCCCAAATCCCAGGTCCCTTGCTCCAGGCGCCCGAGTCCCAAATCTCTGCGCCCCCTACAAGAGGTTCTTCCAACCTTTTCTTCTGGTCAAGAAGTCCTTCCAACCTTGTCACTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

310

Amino Acids

33.33

Weight (kDa)

7.98

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 13 - 164 1.6e-27 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06370
fragaria_vesca FvH4_6g20310 FvH4_6g20310 FvH4_6g20310
malus_domestica MD14G1039000.v1.1
prunus_persica Prupe.7G094600_v2.0.a1
pyrus_communis pycom14g03350
rosa_chinensis RchiOBHm_Chr3g0475931
rosa_laevigata RLG00000023799
rosa_multiflora Rmu_co8434183.1_g000001 Rmu_sc0000596.1_g000004 Rmu_sc0009168.1_g000002
rosa_roxburghii Rroxscaffold_6G00405720
rosa_rugosa Rorug03G0151900 Rorug03G0152000
rosa_samantha Rh3AG202900 Rh3BG232700 Rh3CG228200 Rh3DG228400
rosa_wichuraiana Rw3G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
AccB1I GGYRCC 2 cut(s) 805, 841
AccB7I CCANNNNNTGG 1 cut(s) 736
AccI GTMKAC 1 cut(s) 630
AciI CCGC 1 cut(s) 575
AclWI GGATC 2 cut(s) 57, 507
AcoI YGGCCR 1 cut(s) 139
AcyI GRCGYC 1 cut(s) 842
AfaI GTAC 2 cut(s) 296, 647
AfiI CCNNNNNNNGG 3 cut(s) 331, 736, 875
AgsI TTSAA 3 cut(s) 268, 305, 416
AjiI CACGTC 1 cut(s) 137
AjnI CCWGG 5 cut(s) 43, 729, 801, 823, 837
AjuI GAANNNNNNNTTGG 2 cut(s) 878, 910
AluBI AGCT 5 cut(s) 186, 614, 719, 755, 791
AluI AGCT 5 cut(s) 186, 614, 719, 755, 791
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 1 cut(s) 703
Alw44I GTGCAC 1 cut(s) 355
AlwI GGATC 2 cut(s) 57, 507
Ama87I CYCGRG 4 cut(s) 342, 773, 809, 845
AoxI GGCC 2 cut(s) 139, 741
ApaLI GTGCAC 1 cut(s) 355
ApeKI GCWGC 6 cut(s) 7, 487, 530, 557, 577, 716
ArsI GACNNNNNNTTYG 2 cut(s) 811, 843
Asp700I GAANNNNTTC 1 cut(s) 910
AspLEI GCGC 2 cut(s) 844, 865
AspS9I GGNCC 5 cut(s) 191, 391, 548, 742, 827
AsuC2I CCSGG 3 cut(s) 343, 344, 484
AsuHPI GGTGA 2 cut(s) 121, 580
AvaI CYCGRG 4 cut(s) 342, 773, 809, 845
AvaII GGWCC 4 cut(s) 191, 391, 548, 827
BaeGI GKGCMC 1 cut(s) 359
BalI TGGCCA 1 cut(s) 141
BanI GGYRCC 2 cut(s) 805, 841
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 5 cut(s) 474, 542, 564, 569, 728
BccI CCATC 2 cut(s) 96, 402
BceAI ACGGC 1 cut(s) 545
BcgI CGANNNNNNTGC 2 cut(s) 705, 739
BciT130I CCWGG 5 cut(s) 45, 731, 803, 825, 839
BcnI CCSGG 3 cut(s) 343, 344, 484
BcoDI GTCTC 1 cut(s) 703
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 1 cut(s) 845
BfuAI ACCTGC 1 cut(s) 417
BisI GCNGC 6 cut(s) 8, 488, 531, 558, 578, 717
BlsI GCNGC 6 cut(s) 9, 489, 532, 559, 579, 718
Bme1390I CCNGG 8 cut(s) 45, 343, 344, 484, 731, 803, 825, 839
Bme18I GGWCC 4 cut(s) 191, 391, 548, 827
BmeT110I CYCGRG 4 cut(s) 342, 773, 809, 845
BmgBI CACGTC 1 cut(s) 137
BmgT120I GGNCC 5 cut(s) 191, 391, 548, 742, 827
BmiI GGNNCC 4 cut(s) 549, 807, 829, 843
BmrFI CCNGG 8 cut(s) 45, 343, 344, 484, 731, 803, 825, 839
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 105, 542
BmuI ACTGGG 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 3 cut(s) 713, 785, 821
Bpu10I CCTNAGC 2 cut(s) 27, 187
BpuMI CCSGG 3 cut(s) 343, 344, 484
BsaHI GRCGYC 1 cut(s) 842
BsaJI CCNNGG 5 cut(s) 44, 230, 342, 343, 823
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 736, 875
Bse1I ACTGG 2 cut(s) 160, 194
BseBI CCWGG 5 cut(s) 45, 731, 803, 825, 839
BseDI CCNNGG 5 cut(s) 44, 230, 342, 343, 823
BseGI GGATG 2 cut(s) 115, 175
BseLI CCNNNNNNNGG 3 cut(s) 331, 736, 875
BseMII CTCAG 4 cut(s) 201, 390, 765, 801
BseNI ACTGG 2 cut(s) 160, 194
BseSI GKGCMC 1 cut(s) 359
BseXI GCAGC 5 cut(s) 474, 542, 564, 569, 728
BsgI GTGCAG 1 cut(s) 208
BshFI GGCC 2 cut(s) 141, 743
BshNI GGYRCC 2 cut(s) 805, 841
BsiHKAI GWGCWC 1 cut(s) 359
BsiHKCI CYCGRG 4 cut(s) 342, 773, 809, 845
BsiSI CCGG 2 cut(s) 343, 483
BslFI GGGAC 6 cut(s) 172, 561, 763, 799, 813, 835
BslI CCNNNNNNNGG 3 cut(s) 331, 736, 875
BsmAI GTCTC 1 cut(s) 703
BsmFI GGGAC 6 cut(s) 172, 561, 763, 799, 813, 835
BsnI GGCC 2 cut(s) 141, 743
BsoBI CYCGRG 4 cut(s) 342, 773, 809, 845
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 2 cut(s) 49, 499
BspACI CCGC 1 cut(s) 575
BspANI GGCC 2 cut(s) 141, 743
BspCNI CTCAG 4 cut(s) 200, 389, 764, 800
BspLI GGNNCC 4 cut(s) 549, 807, 829, 843
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 57, 507
BspT107I GGYRCC 2 cut(s) 805, 841
BsrI ACTGG 2 cut(s) 160, 194
BssECI CCNNGG 5 cut(s) 44, 230, 342, 343, 823
BssMI GATC 2 cut(s) 49, 499
BssNAI GTATAC 1 cut(s) 631
BssNI GRCGYC 1 cut(s) 842
Bst1107I GTATAC 1 cut(s) 631
Bst2UI CCWGG 5 cut(s) 45, 731, 803, 825, 839
Bst4CI ACNGT 4 cut(s) 163, 245, 299, 635
Bst6I CTCTTC 1 cut(s) 231
BstACI GRCGYC 1 cut(s) 842
BstC8I GCNNGC 2 cut(s) 721, 725
BstDEI CTNAG 5 cut(s) 27, 187, 376, 751, 787
BstDSI CCRYGG 1 cut(s) 230
BstENI CCTNNNNNAGG 1 cut(s) 873
BstF5I GGATG 2 cut(s) 115, 175
BstH2I RGCGCY 1 cut(s) 845
BstHHI GCGC 2 cut(s) 844, 865
BstKTI GATC 2 cut(s) 52, 502
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 2 cut(s) 49, 499
BstMWI GCNNNNNNNGC 5 cut(s) 222, 270, 429, 566, 841
BstNI CCWGG 5 cut(s) 45, 731, 803, 825, 839
BstSCI CCNGG 8 cut(s) 43, 341, 342, 482, 729, 801, 823, 837
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 1 cut(s) 359
BstV1I GCAGC 5 cut(s) 474, 542, 564, 569, 728
BstV2I GAAGAC 1 cut(s) 465
BstXI CCANNNNNNTGG 1 cut(s) 22
BstZ17I GTATAC 1 cut(s) 631
BsuRI GGCC 2 cut(s) 141, 743
BtgI CCRYGG 1 cut(s) 230
BtrI CACGTC 1 cut(s) 137
BtsCI GGATG 2 cut(s) 115, 175
BtsI GCAGTG 2 cut(s) 372, 648
BtsIMutI CAGTG 4 cut(s) 168, 250, 372, 648
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 721, 725
CfoI GCGC 2 cut(s) 844, 865
Cfr13I GGNCC 5 cut(s) 191, 391, 548, 742, 827
Cfr9I CCCGGG 1 cut(s) 342
CseI GACGC 1 cut(s) 569
Csp6I GTAC 2 cut(s) 295, 646
CviAII CATG 3 cut(s) 92, 261, 607
CviQI GTAC 2 cut(s) 295, 646
DdeI CTNAG 5 cut(s) 27, 187, 376, 751, 787
DinI GGCGCC 1 cut(s) 843
DpnI GATC 2 cut(s) 51, 501
DpnII GATC 2 cut(s) 49, 499
DraI TTTAAA 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco47I GGWCC 4 cut(s) 191, 391, 548, 827
Eco88I CYCGRG 4 cut(s) 342, 773, 809, 845
EcoNI CCTNNNNNAGG 1 cut(s) 873
EcoO109I RGGNCCY 2 cut(s) 548, 827
EcoRII CCWGG 5 cut(s) 43, 729, 801, 823, 837
EgeI GGCGCC 1 cut(s) 843
EheI GGCGCC 1 cut(s) 843
FaeI CATG 3 cut(s) 95, 264, 610
FalI AAGNNNNNCTT 4 cut(s) 865, 897, 895, 927
FaqI GGGAC 6 cut(s) 172, 561, 763, 799, 813, 835
FatI CATG 3 cut(s) 91, 260, 606
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 6 cut(s) 8, 488, 531, 558, 578, 717
FokI GGATG 2 cut(s) 122, 182
Fsp4HI GCNGC 6 cut(s) 8, 488, 531, 558, 578, 717
FspBI CTAG 1 cut(s) 639
GlaI GCGC 2 cut(s) 843, 864
GluI GCNGC 6 cut(s) 8, 488, 531, 558, 578, 717
GsuI CTGGAG 3 cut(s) 713, 785, 821
HaeII RGCGCY 1 cut(s) 845
HaeIII GGCC 2 cut(s) 141, 743
HapII CCGG 2 cut(s) 343, 483
HgaI GACGC 1 cut(s) 569
HhaI GCGC 2 cut(s) 844, 865
Hin1I GRCGYC 1 cut(s) 842
Hin1II CATG 3 cut(s) 95, 264, 610
Hin6I GCGC 2 cut(s) 842, 863
HinP1I GCGC 2 cut(s) 842, 863
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 4 cut(s) 374, 776, 812, 848
HpaII CCGG 2 cut(s) 343, 483
HphI GGTGA 2 cut(s) 121, 580
Hpy166II GTNNAC 4 cut(s) 316, 357, 631, 648
Hpy188I TCNGA 2 cut(s) 373, 379
Hpy188III TCNNGA 2 cut(s) 189, 903
Hpy8I GTNNAC 4 cut(s) 316, 357, 631, 648
HpyAV CCTTC 1 cut(s) 921
HpyCH4III ACNGT 4 cut(s) 163, 245, 299, 635
HpyCH4IV ACGT 2 cut(s) 136, 353
HpyCH4V TGCA 8 cut(s) 225, 281, 357, 365, 438, 477, 557, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 270, 429, 566, 841
HpyF3I CTNAG 5 cut(s) 27, 187, 376, 751, 787
HpySE526I ACGT 2 cut(s) 136, 353
Hsp92I GRCGYC 1 cut(s) 842
Hsp92II CATG 3 cut(s) 95, 264, 610
HspAI GCGC 2 cut(s) 842, 863
KasI GGCGCC 1 cut(s) 841
Kzo9I GATC 2 cut(s) 49, 499
LmnI GCTCC 6 cut(s) 732, 760, 768, 796, 804, 840
Lsp1109I GCAGC 5 cut(s) 474, 542, 564, 569, 728
LweI GCATC 2 cut(s) 105, 542
MaeI CTAG 1 cut(s) 639
MaeII ACGT 2 cut(s) 136, 353
MaeIII GTNAC 2 cut(s) 586, 922
MalI GATC 2 cut(s) 51, 501
MboI GATC 2 cut(s) 49, 499
MboII GAAGA 5 cut(s) 248, 470, 694, 873, 886
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 359
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 1 cut(s) 451
MluNI TGGCCA 1 cut(s) 141
Mly113I GGCGCC 1 cut(s) 842
MlyI GAGTC 4 cut(s) 368, 785, 821, 857
MmeI TCCRAC 5 cut(s) 39, 147, 223, 351, 909
MnlI CCTC 8 cut(s) 60, 213, 341, 561, 660, 688, 733, 869
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 910
MscI TGGCCA 1 cut(s) 141
MseI TTAA 2 cut(s) 39, 444
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 2 cut(s) 577, 719
MspI CCGG 2 cut(s) 343, 483
MspR9I CCNGG 8 cut(s) 45, 343, 344, 484, 731, 803, 825, 839
MunI CAATTG 1 cut(s) 451
MvaI CCWGG 5 cut(s) 45, 731, 803, 825, 839
MwoI GCNNNNNNNGC 5 cut(s) 222, 270, 429, 566, 841
NarI GGCGCC 1 cut(s) 842
NciI CCSGG 3 cut(s) 343, 344, 484
NdeII GATC 2 cut(s) 49, 499
NlaIII CATG 3 cut(s) 95, 264, 610
NlaIV GGNNCC 4 cut(s) 549, 807, 829, 843
NmuCI GTSAC 2 cut(s) 586, 922
PdmI GAANNNNTTC 1 cut(s) 910
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 736
PkrI GCNGC 6 cut(s) 9, 489, 532, 559, 579, 718
PleI GAGTC 4 cut(s) 368, 784, 820, 856
PluTI GGCGCC 1 cut(s) 845
PpsI GAGTC 4 cut(s) 368, 784, 820, 856
PpuMI RGGWCCY 2 cut(s) 548, 827
Psp5II RGGWCCY 2 cut(s) 548, 827
Psp6I CCWGG 5 cut(s) 43, 729, 801, 823, 837
PspGI CCWGG 5 cut(s) 43, 729, 801, 823, 837
PspN4I GGNNCC 4 cut(s) 549, 807, 829, 843
PspPI GGNCC 5 cut(s) 191, 391, 548, 742, 827
PspPPI RGGWCCY 2 cut(s) 548, 827
PsyI GACNNNGTC 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 2 cut(s) 296, 647
RsaNI GTAC 2 cut(s) 295, 646
SaqAI TTAA 2 cut(s) 39, 444
SatI GCNGC 6 cut(s) 8, 488, 531, 558, 578, 717
Sau3AI GATC 2 cut(s) 49, 499
Sau96I GGNCC 5 cut(s) 191, 391, 548, 742, 827
SchI GAGTC 4 cut(s) 368, 785, 821, 857
ScrFI CCNGG 8 cut(s) 45, 343, 344, 484, 731, 803, 825, 839
SduI GDGCHC 1 cut(s) 359
SfaNI GCATC 2 cut(s) 105, 542
SfcI CTRYAG 1 cut(s) 615
SfoI GGCGCC 1 cut(s) 843
SinI GGWCC 4 cut(s) 191, 391, 548, 827
SmaI CCCGGG 1 cut(s) 344
Sse9I AATT 1 cut(s) 451
SsiI CCGC 1 cut(s) 575
SspDI GGCGCC 1 cut(s) 841
SspI AATATT 1 cut(s) 308
SspMI CTAG 1 cut(s) 639
StyD4I CCNGG 8 cut(s) 43, 341, 342, 482, 729, 801, 823, 837
TaaI ACNGT 4 cut(s) 163, 245, 299, 635
TaiI ACGT 2 cut(s) 139, 356
TaqI TCGA 1 cut(s) 397
TasI AATT 1 cut(s) 451
Tru1I TTAA 2 cut(s) 39, 444
Tru9I TTAA 2 cut(s) 39, 444
TscAI CASTG 4 cut(s) 168, 250, 372, 655
TseFI GTSAC 2 cut(s) 586, 922
TseI GCWGC 6 cut(s) 7, 487, 530, 557, 577, 716
Tsp45I GTSAC 2 cut(s) 586, 922
TspDTI ATGAA 1 cut(s) 113
TspMI CCCGGG 1 cut(s) 342
TspRI CASTG 4 cut(s) 168, 250, 372, 655
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 736
VneI GTGCAC 1 cut(s) 355
VpaK11BI GGWCC 4 cut(s) 191, 391, 548, 827
XagI CCTNNNNNAGG 1 cut(s) 873
XmaI CCCGGG 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 910
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.