Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007806

Physical Location & Seq

Genomic Coordinates Forward (+)

12479402 .. 12484021

Gene Structure 4620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0152000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGGCGTGGCTTCCGTCATCCACAACGGCGTTCGCATTCCCCTGAAATTCAACCCAGACCTTCCTAGGGTTTCATCACGATCCCCAGCAGCCCCAAAATGGAGCAGACCTCACTCTATCCACCATATTGTTCTTCGCCTCCGCACAGGCGGTGGCCATGGTCGTCAGTCTGTGCCAATTGTGTGTTCTAGAGCAACTGAGCAGGACGATGATGTATTCACTTCAGAAGGCGAGAGGATTGATCCTCAGTCATATGATGGCATTAGTAATGTGGACACTTCTCACACTTCCACTCCGGATAAATCTAAGGGAGCTGAAGCTTATGTTACTTCTGTAAGAACTGTAGCTTTTTGGGTGTGTGCAGCGGTAGCATTTGGAGTTGGTGTGGGTTTTAAAGACGGCGTTGGCAAGGCAACCGAGTTTTTTGCCGGGTATTTACTGGAGCAAAGTCTGTCAGTGGACAACTTGTTTGTGTTTGTTCTGATTTTCAAGTACTTCAAAGTGCCACTTATGTATCAGGGTCGTGTTCTTTCATTTGGTATTGCTGGTGCAATCATCTTTCGGTTGACATTGATACTCCTCGGAACAGTCACACTTCAGAGGTTTGAGGCAGTAAATCTTTTCCTCGCTGCAATATTACTTTACTCATCCTTCAAGTTATTTTCCAGTGAAGAAGATGACACTGATCTATCTGACAACTTTGTTGTGAAGACATGCCAGAAATTTATCCCTGTCACCGCTGCTTATGATGGCAATCGATTTTTTACAATTCAAGAGGGTGTGTGGAAGGCCACACCTTTACTTCTCACTGTAGCAGTTATTGAGCTCAGCGATATAGCATTCGCTGTCGACTCTATACCAGCAGTTTTTGGCATTACTCGGGATCCTTTTATAGTTTTCTCTTCTAATCTATTTGCCATCGTAGGTTTAAGGTCGCTTTACACACTCATTTCTGAGGGTATGGCAGACTTGGAGTATTTACAGCCGTCAATCGGTGTTGTTCTCGGCTTTATTGGGTGTAAAATGATCCTGGATTTTTTTGGGTTCCACATATCAACGGAGGTGTCTCTCGGTTTTGTAGCGACAAGTCTTAGCACTGGGGTGCTATTAAGTCTAATGAAGAAATCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006664 GO:0006725 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009698 GO:0009699 GO:0009707 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009867 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0019374 GO:0019375 GO:0019438 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031323 GO:0031407 GO:0031408 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0032870 GO:0035250 GO:0042170 GO:0042221 GO:0042548 GO:0042550 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0046467 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

377

Amino Acids

41.12

Weight (kDa)

6.0

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TerC	PF03741	142 - 345	8.6e-47	Integral membrane protein TerC family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11670 AT3G11670
fragaria_vesca	FvH4_6g20320
malus_domestica	MD12G1040400.v1.1 MD14G1039100.v1.1
prunus_persica	Prupe.7G094500_v2.0.a1
pyrus_communis	pycom12g03450 pycom14g03360
rosa_chinensis	RchiOBHm_Chr3g0475941
rosa_laevigata	RLG00000023798
rosa_multiflora	Rmu_sc0000441.1_g000087 Rmu_sc0000596.1_g000001 Rmu_sc0001809.1_g000063
rosa_roxburghii	Rroxscaffold_6G00405710
rosa_rugosa	Rorug03G0152000 Rorug03G0152100 Rorug03G0152100 Rorug03G0152200
rosa_samantha	Rh2BG524200 Rh3AG203000 Rh3BG232800 Rh3CG228300 Rh3DG228500
rosa_wichuraiana	Rw3G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	849
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	4 cut(s)	142, 150, 365, 738
AclWI	GGATC	5 cut(s)	75, 236, 878, 891, 1021
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	47, 722
AcuI	CTGAAG	3 cut(s)	207, 336, 581
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	3 cut(s)	67, 99, 992
AgsI	TTSAA	5 cut(s)	52, 490, 499, 655, 773
AjnI	CCWGG	1 cut(s)	1029
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AleI	CACNNNNGTG	1 cut(s)	1100
AluBI	AGCT	4 cut(s)	314, 320, 347, 826
AluI	AGCT	4 cut(s)	314, 320, 347, 826
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	1 cut(s)	1071
AlwI	GGATC	5 cut(s)	75, 236, 878, 891, 1021
Ama87I	CYCGRG	1 cut(s)	879
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	2 cut(s)	154, 789
ApeKI	GCWGC	4 cut(s)	89, 362, 629, 740
ApoI	RAATTY	2 cut(s)	47, 722
ArsI	GACNNNNNNTTYG	2 cut(s)	452, 484
AspA2I	CCTAGG	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	727
AvaI	CYCGRG	1 cut(s)	879
AvrII	CCTAGG	1 cut(s)	65
BaeI	ACNNNNGTAYC	2 cut(s)	497, 530
BalI	TGGCCA	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	883
BanII	GRGCYC	1 cut(s)	828
BbsI	GAAGAC	1 cut(s)	716
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	4 cut(s)	101, 374, 616, 727
BccI	CCATC	3 cut(s)	251, 743, 926
BceAI	ACGGC	3 cut(s)	43, 415, 970
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	1 cut(s)	1031
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	1071
BfaI	CTAG	3 cut(s)	66, 189, 1132
BfmI	CTRYAG	2 cut(s)	342, 810
BisI	GCNGC	4 cut(s)	90, 363, 630, 741
BlnI	CCTAGG	1 cut(s)	65
BlpI	GCTNAGC	1 cut(s)	827
BlsI	GCNGC	4 cut(s)	91, 364, 631, 742
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	2 cut(s)	430, 1031
BmeT110I	CYCGRG	1 cut(s)	879
BmiI	GGNNCC	2 cut(s)	885, 1046
BmrFI	CCNGG	2 cut(s)	430, 1031
BmrI	ACTGGG	1 cut(s)	1107
BmuI	ACTGGG	1 cut(s)	1107
BpiI	GAAGAC	1 cut(s)	716
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpmI	CTGGAG	1 cut(s)	461
Bpu1102I	GCTNAGC	1 cut(s)	827
BpuMI	CCSGG	1 cut(s)	430
Bsa29I	ATCGAT	1 cut(s)	757
BsaBI	GATNNNNATC	1 cut(s)	753
BsaJI	CCNNGG	3 cut(s)	65, 157, 580
BsaWI	WCCGGW	1 cut(s)	295
BsaXI	ACNNNNNCTCC	4 cut(s)	277, 307, 369, 399
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 99, 992
Bse1I	ACTGG	3 cut(s)	444, 666, 1102
Bse8I	GATNNNNATC	1 cut(s)	753
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	1031
BseCI	ATCGAT	1 cut(s)	757
BseDI	CCNNGG	3 cut(s)	65, 157, 580
BseGI	GGATG	2 cut(s)	18, 647
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	3 cut(s)	67, 99, 992
BseMII	CTCAG	4 cut(s)	189, 260, 841, 945
BseNI	ACTGG	3 cut(s)	444, 666, 1102
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	4 cut(s)	101, 374, 616, 727
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	156, 791
BshVI	ATCGAT	1 cut(s)	757
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	1 cut(s)	879
BsiSI	CCGG	2 cut(s)	296, 429
BslI	CCNNNNNNNGG	3 cut(s)	67, 99, 992
BsmAI	GTCTC	1 cut(s)	1071
BsmI	GAATGC	2 cut(s)	36, 839
BsnI	GGCC	2 cut(s)	156, 791
BsoBI	CYCGRG	1 cut(s)	879
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	5 cut(s)	80, 241, 685, 883, 1026
Bsp1720I	GCTNAGC	1 cut(s)	827
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	4 cut(s)	142, 150, 365, 738
BspANI	GGCC	2 cut(s)	156, 791
BspCNI	CTCAG	4 cut(s)	190, 259, 840, 946
BspDI	ATCGAT	1 cut(s)	757
BspEI	TCCGGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	885, 1046
BspPI	GGATC	5 cut(s)	75, 236, 878, 891, 1021
BsrI	ACTGG	3 cut(s)	444, 666, 1102
BssECI	CCNNGG	3 cut(s)	65, 157, 580
BssMI	GATC	5 cut(s)	80, 241, 685, 883, 1026
BssT1I	CCWWGG	2 cut(s)	65, 157
Bst2UI	CCWGG	1 cut(s)	1031
Bst4CI	ACNGT	3 cut(s)	343, 589, 811
Bst6I	CTCTTC	1 cut(s)	907
BstDEI	CTNAG	6 cut(s)	198, 246, 306, 827, 954, 1091
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	2 cut(s)	18, 647
BstKTI	GATC	5 cut(s)	83, 244, 688, 886, 1029
BstMAI	GTCTC	1 cut(s)	1071
BstMBI	GATC	5 cut(s)	80, 241, 685, 883, 1026
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	1031
BstNSI	RCATGY	1 cut(s)	717
BstSCI	CCNGG	2 cut(s)	428, 1029
BstSFI	CTRYAG	2 cut(s)	342, 810
BstV1I	GCAGC	4 cut(s)	101, 374, 616, 727
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
Bsu15I	ATCGAT	1 cut(s)	757
BsuRI	GGCC	2 cut(s)	156, 791
BsuTUI	ATCGAT	1 cut(s)	757
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	18, 647
BtsIMutI	CAGTG	5 cut(s)	462, 673, 681, 807, 1095
ClaI	ATCGAT	1 cut(s)	757
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	2 cut(s)	158, 714
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	6 cut(s)	198, 246, 306, 827, 954, 1091
DpnI	GATC	5 cut(s)	82, 243, 687, 885, 1028
DpnII	GATC	5 cut(s)	80, 241, 685, 883, 1026
DraI	TTTAAA	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	907
EarI	CTCTTC	1 cut(s)	907
Ecl136II	GAGCTC	1 cut(s)	826
Eco130I	CCWWGG	2 cut(s)	65, 157
Eco24I	GRGCYC	1 cut(s)	828
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	3 cut(s)	207, 336, 581
Eco88I	CYCGRG	1 cut(s)	879
EcoICRI	GAGCTC	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	1029
EcoT14I	CCWWGG	2 cut(s)	65, 157
EcoT38I	GRGCYC	1 cut(s)	828
ErhI	CCWWGG	2 cut(s)	65, 157
FaeI	CATG	2 cut(s)	161, 717
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FatI	CATG	2 cut(s)	157, 713
FauNDI	CATATG	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	4 cut(s)	90, 363, 630, 741
FokI	GGATG	2 cut(s)	5, 634
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	4 cut(s)	90, 363, 630, 741
FspBI	CTAG	3 cut(s)	66, 189, 1132
GluI	GCNGC	4 cut(s)	90, 363, 630, 741
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	2 cut(s)	156, 791
HapII	CCGG	2 cut(s)	296, 429
Hin1II	CATG	2 cut(s)	161, 717
HincII	GTYRAC	2 cut(s)	567, 850
HindII	GTYRAC	2 cut(s)	567, 850
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	1 cut(s)	851
HpaII	CCGG	2 cut(s)	296, 429
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	4 cut(s)	274, 460, 567, 850
Hpy188I	TCNGA	7 cut(s)	226, 483, 584, 600, 694, 955, 1129
Hpy188III	TCNNGA	5 cut(s)	78, 189, 296, 773, 881
Hpy8I	GTNNAC	4 cut(s)	274, 460, 567, 850
HpyAV	CCTTC	4 cut(s)	71, 221, 661, 781
HpyCH4III	ACNGT	3 cut(s)	343, 589, 811
HpyCH4V	TGCA	3 cut(s)	362, 551, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	6 cut(s)	198, 246, 306, 827, 954, 1091
Hsp92II	CATG	2 cut(s)	161, 717
Kpn2I	TCCGGA	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	80, 241, 685, 883, 1026
LmnI	GCTCC	3 cut(s)	102, 311, 442
Lsp1109I	GCAGC	4 cut(s)	101, 374, 616, 727
MaeI	CTAG	3 cut(s)	66, 189, 1132
MaeIII	GTNAC	3 cut(s)	325, 589, 733
MalI	GATC	5 cut(s)	82, 243, 687, 885, 1028
MboI	GATC	5 cut(s)	80, 241, 685, 883, 1026
MboII	GAAGA	6 cut(s)	125, 683, 686, 721, 894, 1132
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	1 cut(s)	828
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	4 cut(s)	47, 177, 722, 768
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	845
Mox20I	TGGCCA	1 cut(s)	156
MroI	TCCGGA	1 cut(s)	295
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	3 cut(s)	393, 929, 1109
MslI	CAYNNNNRTG	1 cut(s)	1100
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	365, 740
MspI	CCGG	2 cut(s)	296, 429
MspR9I	CCNGG	2 cut(s)	430, 1031
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	2 cut(s)	36, 839
MvaI	CCWGG	1 cut(s)	1031
MwoI	GCNNNNNNNGC	1 cut(s)	368
NciI	CCSGG	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	157
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	5 cut(s)	80, 241, 685, 883, 1026
NlaIII	CATG	2 cut(s)	161, 717
NlaIV	GGNNCC	2 cut(s)	885, 1046
NmeAIII	GCCGAG	1 cut(s)	984
NmuCI	GTSAC	2 cut(s)	589, 733
NspI	RCATGY	1 cut(s)	717
OliI	CACNNNNGTG	1 cut(s)	1100
PctI	GAATGC	2 cut(s)	36, 839
PfoI	TCCNGGA	1 cut(s)	1029
PkrI	GCNGC	4 cut(s)	91, 364, 631, 742
PleI	GAGTC	1 cut(s)	845
PpsI	GAGTC	1 cut(s)	845
Psp124BI	GAGCTC	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	1029
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	1029
PspN4I	GGNNCC	2 cut(s)	885, 1046
PsuI	RGATCY	1 cut(s)	883
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	1100
SacI	GAGCTC	1 cut(s)	828
SalI	GTCGAC	1 cut(s)	848
SaqAI	TTAA	3 cut(s)	393, 929, 1109
SatI	GCNGC	4 cut(s)	90, 363, 630, 741
Sau3AI	GATC	5 cut(s)	80, 241, 685, 883, 1026
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	2 cut(s)	430, 1031
SduI	GDGCHC	1 cut(s)	828
SfcI	CTRYAG	2 cut(s)	342, 810
SmiMI	CAYNNNNRTG	1 cut(s)	1100
Sse9I	AATT	4 cut(s)	47, 177, 722, 768
SsiI	CCGC	4 cut(s)	142, 150, 365, 738
SspI	AATATT	1 cut(s)	636
SspMI	CTAG	3 cut(s)	66, 189, 1132
SstI	GAGCTC	1 cut(s)	828
StyD4I	CCNGG	2 cut(s)	428, 1029
StyI	CCWWGG	2 cut(s)	65, 157
TaaI	ACNGT	3 cut(s)	343, 589, 811
TaqI	TCGA	2 cut(s)	757, 849
TasI	AATT	4 cut(s)	47, 177, 722, 768
TatI	WGTACW	1 cut(s)	492
Tru1I	TTAA	3 cut(s)	393, 929, 1109
Tru9I	TTAA	3 cut(s)	393, 929, 1109
TscAI	CASTG	5 cut(s)	462, 673, 688, 814, 1102
TseFI	GTSAC	2 cut(s)	589, 733
TseI	GCWGC	4 cut(s)	89, 362, 629, 740
Tsp45I	GTSAC	2 cut(s)	589, 733
TspDTI	ATGAA	3 cut(s)	63, 522, 1133
TspGWI	ACGGA	2 cut(s)	4, 1073
TspRI	CASTG	5 cut(s)	462, 673, 688, 814, 1102
XapI	RAATTY	2 cut(s)	47, 722
XbaI	TCTAGA	1 cut(s)	188
XceI	RCATGY	1 cut(s)	717
XmaJI	CCTAGG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	849
XspI	CTAG	3 cut(s)	66, 189, 1132
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.