Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000441.1

Orthogroup ID

OG0007806

Physical Location & Seq

Genomic Coordinates Forward (+)

317343 .. 317940

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000441.1_g000087.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ctggcaaagatcgacatcaaaagtggggcgatcctacagaagaaaagctcaattcaaaggagagagagggtacacgttactggagttattgttgaagcaacctcattggctgctcctccgccgccgccccgaccagcaccctctgacatcccaaaccaccgacttcttcttcaggctaccctttgccagactctgagaccgacgtcaccacccgacgctcgacaccgacaaccgagacccagaaccatcacctccttcaagaaggtgctggagaaatggactctgaggttgacgattcggattgatttatcggcaataaagaatgctatagtgtcggtggtggaagatagtgaagggaagatggaatttgataggattagaaggaggaggagtttgaagtttactgacttttggggagagtgcaaaagagatggtgatgatgaggaattgggagccaattcgggtgttgaagacgagattgaaagagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006664 GO:0006725 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009698 GO:0009699 GO:0009707 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009867 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0019374 GO:0019375 GO:0019438 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031323 GO:0031407 GO:0031408 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0032870 GO:0035250 GO:0042170 GO:0042221 GO:0042548 GO:0042550 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0046467 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

163

Amino Acids

18.45

Weight (kDa)

9.79

Isoelectric Point (pI)

61.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11670 AT3G11670
fragaria_vesca	FvH4_6g20320
malus_domestica	MD12G1040400.v1.1 MD14G1039100.v1.1
prunus_persica	Prupe.7G094500_v2.0.a1
pyrus_communis	pycom12g03450 pycom14g03360
rosa_chinensis	RchiOBHm_Chr3g0475941
rosa_laevigata	RLG00000023798
rosa_multiflora	Rmu_sc0000441.1_g000087 Rmu_sc0000596.1_g000001 Rmu_sc0001809.1_g000063
rosa_roxburghii	Rroxscaffold_6G00405710
rosa_rugosa	Rorug03G0152000 Rorug03G0152100 Rorug03G0152100 Rorug03G0152200
rosa_samantha	Rh2BG524200 Rh3AG203000 Rh3BG232800 Rh3CG228300 Rh3DG228500
rosa_wichuraiana	Rw3G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	206
AciI	CCGC	3 cut(s)	119, 122, 125
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	72
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	6 cut(s)	56, 95, 259, 397, 470, 482
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
Alw26I	GTCTC	2 cut(s)	190, 229
AlwI	GGATC	1 cut(s)	25
AlwNI	CAGNNNCTG	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	365
AsuHPI	GGTGA	3 cut(s)	198, 241, 446
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	3 cut(s)	254, 355, 425
BcoDI	GTCTC	2 cut(s)	190, 229
BfmI	CTRYAG	2 cut(s)	35, 327
BisI	GCNGC	3 cut(s)	111, 122, 125
BlsI	GCNGC	3 cut(s)	112, 123, 126
BmiI	GGNNCC	1 cut(s)	454
BoxI	GACNNNNGTC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	477
BpmI	CTGGAG	2 cut(s)	102, 290
BsaBI	GATNNNNATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	203
BsaI	GGTCTC	2 cut(s)	190, 229
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 376, 406
Bse1I	ACTGG	1 cut(s)	85
Bse8I	GATNNNNATC	1 cut(s)	14
BseGI	GGATG	1 cut(s)	147
BseJI	GATNNNNATC	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	185, 275
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	3 cut(s)	105, 400, 403
BseXI	GCAGC	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	190, 229
BsmI	GAATGC	1 cut(s)	328
Bso31I	GGTCTC	2 cut(s)	190, 229
Bsp143I	GATC	2 cut(s)	9, 30
BspACI	CCGC	3 cut(s)	119, 122, 125
BspCNI	CTCAG	2 cut(s)	186, 276
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	25
BspTNI	GGTCTC	2 cut(s)	190, 229
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	2 cut(s)	9, 30
BssNI	GRCGYC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	194, 284
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	2 cut(s)	12, 33
BstMAI	GTCTC	2 cut(s)	190, 229
BstMBI	GATC	2 cut(s)	9, 30
BstPAI	GACNNNNGTC	1 cut(s)	202
BstSFI	CTRYAG	2 cut(s)	35, 327
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	193
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	71
CviJI	RGCY	4 cut(s)	48, 110, 176, 455
CviKI_1	RGCY	4 cut(s)	48, 110, 176, 455
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	2 cut(s)	194, 284
DpnI	GATC	2 cut(s)	11, 32
DpnII	GATC	2 cut(s)	9, 30
EciI	GGCGGA	1 cut(s)	108
Eco31I	GGTCTC	2 cut(s)	190, 229
Eco57I	CTGAAG	1 cut(s)	155
FaiI	YATR	1 cut(s)	329
Fnu4HI	GCNGC	3 cut(s)	111, 122, 125
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	3 cut(s)	111, 122, 125
GluI	GCNGC	3 cut(s)	111, 122, 125
GsuI	CTGGAG	2 cut(s)	102, 290
HgaI	GACGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	3 cut(s)	190, 280, 295
HphI	GGTGA	3 cut(s)	198, 241, 446
Hpy166II	GTNNAC	3 cut(s)	73, 291, 402
Hpy188I	TCNGA	4 cut(s)	145, 195, 285, 300
Hpy188III	TCNNGA	1 cut(s)	259
Hpy8I	GTNNAC	3 cut(s)	73, 291, 402
Hpy99I	CGWCG	2 cut(s)	205, 218
HpyAV	CCTTC	4 cut(s)	256, 265, 347, 375
HpyCH4IV	ACGT	2 cut(s)	75, 203
HpyCH4V	TGCA	1 cut(s)	423
HpyF3I	CTNAG	2 cut(s)	194, 284
HpySE526I	ACGT	2 cut(s)	75, 203
Hsp92I	GRCGYC	1 cut(s)	203
Kzo9I	GATC	2 cut(s)	9, 30
LmnI	GCTCC	2 cut(s)	118, 452
LpnPI	CCDG	6 cut(s)	66, 147, 158, 200, 253, 254
Lsp1109I	GCAGC	1 cut(s)	97
MaeII	ACGT	2 cut(s)	75, 203
MaeIII	GTNAC	2 cut(s)	76, 204
MalI	GATC	2 cut(s)	11, 32
MboI	GATC	2 cut(s)	9, 30
MboII	GAAGA	6 cut(s)	52, 158, 161, 356, 370, 482
MluCI	AATT	4 cut(s)	51, 365, 446, 457
MlyI	GAGTC	2 cut(s)	184, 274
MnlI	CCTC	9 cut(s)	60, 112, 126, 151, 262, 279, 378, 381, 436
Mva1269I	GAATGC	1 cut(s)	328
NdeII	GATC	2 cut(s)	9, 30
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	204
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	112, 123, 126
PleI	GAGTC	2 cut(s)	184, 274
PpsI	GAGTC	2 cut(s)	184, 274
PshAI	GACNNNNGTC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SatI	GCNGC	3 cut(s)	111, 122, 125
Sau3AI	GATC	2 cut(s)	9, 30
SchI	GAGTC	2 cut(s)	184, 274
SetI	ASST	7 cut(s)	50, 78, 104, 206, 254, 267, 290
SfcI	CTRYAG	2 cut(s)	35, 327
Sse9I	AATT	4 cut(s)	51, 365, 446, 457
SsiI	CCGC	3 cut(s)	119, 122, 125
TaiI	ACGT	2 cut(s)	78, 206
TaqI	TCGA	2 cut(s)	12, 220
TaqII	GACCGA	1 cut(s)	214
TasI	AATT	4 cut(s)	51, 365, 446, 457
TauI	GCSGC	2 cut(s)	124, 127
TfiI	GAWTC	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	365
ZraI	GACGTC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.