Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007806

Physical Location & Seq

Genomic Coordinates Forward (+)

12485552 .. 12487874

Gene Structure 2323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0152100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCTTATACTCAGGAGGTTCTTCCCACACCGTTGGATGCCACTTCCAACCCACCTCCTCTCTTTGATGGCACTACAAGGTTGTATACCTATTACTCTTGCCCATTTGCACAGAGGGTGTGGATCACTAGGAATTATAAGGGTTTACAAGATCAGATTAAGTTAGTCCCTTTAAATCTCCAAAACAGGCCTGCTTGGTACAAGGAAAAGGTCTACCCTGAGAATAAGGTGCCAGCGCTGGAGCACAATGGAAAGATCATAGGGGAGAGTCTTGATCTGATCAAATATGTAGATAGCAACTTTGAAGGGCCTTCACTTTTCCCCAAAGACCCTGAGAAAGCAAAGTTTGGTGAAGAATTAATATCACATGTCGGTACCTTCACCGGGGCTTTGTATACTGCATTCAAAGCAAATGACACGGTAAAACAAGCTGATGCTCAGTTTGATTACCTGGAAAATGCTCTGAAAAAATTTGACGATGGGCCATTTTTCCTGGGTCAGTTCAGTTTGGCGGACATAGCCTATATCCCATTTGTTGAGAGATTCCAAAGCTTCTTATCAGAGGTGTGGAAGTATGATATCGCAGCTGGCAGGCCTAAACTAGCAGCATGGTTGGAGGAAATCAACAAGATTGATGCTTATAAGGTAACCAAAACTGATCCAAAAGAGCTAGTTGGATTCTACAAGAAGCGCTTCTTGGAGCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006664 GO:0006725 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009698 GO:0009699 GO:0009707 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009867 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0019374 GO:0019375 GO:0019438 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031323 GO:0031407 GO:0031408 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0032870 GO:0035250 GO:0042170 GO:0042221 GO:0042548 GO:0042550 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0046467 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

236

Amino Acids

27.13

Weight (kDa)

5.83

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	26 - 98	1.1e-07	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	28 - 104	6e-24	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	34 - 99	2.5e-18	Glutathione S-transferase, N-terminal domain
GST_C_5	PF16865	121 - 204	2.5e-09	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	141 - 206	2.3e-12	Glutathione S-transferase, C-terminal domain
GST_C	PF00043	141 - 210	6.3e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11670 AT3G11670
fragaria_vesca	FvH4_6g20320
malus_domestica	MD12G1040400.v1.1 MD14G1039100.v1.1
prunus_persica	Prupe.7G094500_v2.0.a1
pyrus_communis	pycom12g03450 pycom14g03360
rosa_chinensis	RchiOBHm_Chr3g0475941
rosa_laevigata	RLG00000023798
rosa_multiflora	Rmu_sc0000441.1_g000087 Rmu_sc0000596.1_g000001 Rmu_sc0001809.1_g000063
rosa_roxburghii	Rroxscaffold_6G00405710
rosa_rugosa	Rorug03G0152000 Rorug03G0152100 Rorug03G0152100 Rorug03G0152200
rosa_samantha	Rh2BG524200 Rh3AG203000 Rh3BG232800 Rh3CG228300 Rh3DG228500
rosa_wichuraiana	Rw3G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	138, 642
Acc65I	GGTACC	1 cut(s)	374
AccB1I	GGYRCC	2 cut(s)	229, 374
AccI	GTMKAC	3 cut(s)	86, 213, 395
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	2 cut(s)	131, 653
AcsI	RAATTY	1 cut(s)	470
AfaI	GTAC	2 cut(s)	200, 376
AfeI	AGCGCT	2 cut(s)	237, 692
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	305, 406
AjnI	CCWGG	2 cut(s)	450, 492
AjuI	GAANNNNNNNTTGG	1 cut(s)	680
AluBI	AGCT	4 cut(s)	431, 552, 587, 670
AluI	AGCT	4 cut(s)	431, 552, 587, 670
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	131, 653
Aor51HI	AGCGCT	2 cut(s)	237, 692
AoxI	GGCC	4 cut(s)	188, 308, 482, 593
ApeKI	GCWGC	2 cut(s)	584, 605
ApoI	RAATTY	1 cut(s)	470
AseI	ATTAAT	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	692
Asp718I	GGTACC	1 cut(s)	374
AspLEI	GCGC	2 cut(s)	238, 693
AspS9I	GGNCC	2 cut(s)	308, 482
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	362, 373
BanI	GGYRCC	2 cut(s)	229, 374
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	596, 617
BccI	CCATC	2 cut(s)	62, 473
BciT130I	CCWGG	2 cut(s)	452, 494
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	385
BfaI	CTAG	3 cut(s)	129, 602, 671
BfoI	RGCGCY	2 cut(s)	239, 694
BisI	GCNGC	2 cut(s)	585, 606
BlsI	GCNGC	2 cut(s)	586, 607
Bme1390I	CCNGG	3 cut(s)	385, 452, 494
BmgT120I	GGNCC	2 cut(s)	308, 482
BmiI	GGNNCC	2 cut(s)	231, 376
BmrFI	CCNGG	3 cut(s)	385, 452, 494
BmsI	GCATC	3 cut(s)	28, 424, 625
BpmI	CTGGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	384, 493
BsaXI	ACNNNNNCTCC	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	452, 494
BseDI	CCNNGG	2 cut(s)	384, 493
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMII	CTCAG	4 cut(s)	26, 210, 324, 452
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	596, 617
BshFI	GGCC	4 cut(s)	190, 310, 484, 595
BshNI	GGYRCC	2 cut(s)	229, 374
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	4 cut(s)	190, 310, 484, 595
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	6 cut(s)	123, 151, 255, 274, 279, 658
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	4 cut(s)	190, 310, 484, 595
BspCNI	CTCAG	4 cut(s)	25, 211, 325, 451
BspLI	GGNNCC	2 cut(s)	231, 376
BspPI	GGATC	2 cut(s)	131, 653
BspT107I	GGYRCC	2 cut(s)	229, 374
BssECI	CCNNGG	2 cut(s)	384, 493
BssMI	GATC	6 cut(s)	123, 151, 255, 274, 279, 658
BssNAI	GTATAC	2 cut(s)	87, 396
Bst1107I	GTATAC	2 cut(s)	87, 396
Bst2UI	CCWGG	2 cut(s)	452, 494
Bst4CI	ACNGT	3 cut(s)	33, 421, 708
BstC8I	GCNNGC	4 cut(s)	192, 234, 589, 593
BstDEI	CTNAG	4 cut(s)	12, 219, 333, 438
BstEII	GGTNACC	1 cut(s)	646
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	2 cut(s)	239, 694
BstHHI	GCGC	2 cut(s)	238, 693
BstKTI	GATC	6 cut(s)	126, 154, 258, 277, 282, 661
BstMBI	GATC	6 cut(s)	123, 151, 255, 274, 279, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 518
BstNI	CCWGG	2 cut(s)	452, 494
BstNSI	RCATGY	1 cut(s)	371
BstPI	GGTNACC	1 cut(s)	646
BstSCI	CCNGG	3 cut(s)	383, 450, 492
BstV1I	GCAGC	2 cut(s)	596, 617
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstZ17I	GTATAC	2 cut(s)	87, 396
BsuRI	GGCC	4 cut(s)	190, 310, 484, 595
BtsCI	GGATG	1 cut(s)	43
Cac8I	GCNNGC	4 cut(s)	192, 234, 589, 593
CfoI	GCGC	2 cut(s)	238, 693
Cfr13I	GGNCC	2 cut(s)	308, 482
Csp6I	GTAC	2 cut(s)	199, 375
CviAII	CATG	2 cut(s)	368, 609
CviQI	GTAC	2 cut(s)	199, 375
DdeI	CTNAG	4 cut(s)	12, 219, 333, 438
DpnI	GATC	6 cut(s)	125, 153, 257, 276, 281, 660
DpnII	GATC	6 cut(s)	123, 151, 255, 274, 279, 658
DraI	TTTAAA	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	527
Eco147I	AGGCCT	2 cut(s)	190, 595
Eco32I	GATATC	1 cut(s)	580
Eco47III	AGCGCT	2 cut(s)	237, 692
Eco91I	GGTNACC	1 cut(s)	646
EcoO109I	RGGNCCY	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	646
EcoRII	CCWGG	2 cut(s)	450, 492
EcoRV	GATATC	1 cut(s)	580
FaeI	CATG	2 cut(s)	371, 612
FalI	AAGNNNNNCTT	3 cut(s)	677, 709, 680
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	367, 608
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	3 cut(s)	86, 213, 395
Fnu4HI	GCNGC	2 cut(s)	585, 606
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	585, 606
FspBI	CTAG	3 cut(s)	129, 602, 671
GlaI	GCGC	2 cut(s)	237, 692
GluI	GCNGC	2 cut(s)	585, 606
GsuI	CTGGAG	1 cut(s)	260
HaeII	RGCGCY	2 cut(s)	239, 694
HaeIII	GGCC	4 cut(s)	190, 310, 484, 595
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	2 cut(s)	238, 693
Hin1II	CATG	2 cut(s)	371, 612
Hin6I	GCGC	2 cut(s)	236, 691
HinP1I	GCGC	2 cut(s)	236, 691
HindIII	AAGCTT	1 cut(s)	550
HinfI	GANTC	3 cut(s)	268, 543, 678
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	362, 373
Hpy166II	GTNNAC	4 cut(s)	87, 146, 214, 396
Hpy188I	TCNGA	4 cut(s)	156, 279, 465, 562
Hpy188III	TCNNGA	2 cut(s)	14, 272
Hpy8I	GTNNAC	4 cut(s)	87, 146, 214, 396
HpyAV	CCTTC	3 cut(s)	299, 321, 388
HpyCH4III	ACNGT	3 cut(s)	33, 421, 708
HpyCH4V	TGCA	2 cut(s)	110, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 518
HpyF3I	CTNAG	4 cut(s)	12, 219, 333, 438
Hsp92II	CATG	2 cut(s)	371, 612
HspAI	GCGC	2 cut(s)	236, 691
KpnI	GGTACC	1 cut(s)	378
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	6 cut(s)	123, 151, 255, 274, 279, 658
LmnI	GCTCC	2 cut(s)	241, 700
Lsp1109I	GCAGC	2 cut(s)	596, 617
LweI	GCATC	3 cut(s)	28, 424, 625
MaeI	CTAG	3 cut(s)	129, 602, 671
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	6 cut(s)	125, 153, 257, 276, 281, 660
MboI	GATC	6 cut(s)	123, 151, 255, 274, 279, 658
MboII	GAAGA	2 cut(s)	14, 365
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	133, 356, 470
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	4 cut(s)	15, 72, 594, 655
MnlI	CCTC	6 cut(s)	10, 66, 69, 108, 556, 610
MroXI	GAANNNNTTC	1 cut(s)	692
MseI	TTAA	3 cut(s)	159, 173, 359
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	3 cut(s)	385, 452, 494
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	2 cut(s)	452, 494
MwoI	GCNNNNNNNGC	2 cut(s)	407, 518
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	6 cut(s)	123, 151, 255, 274, 279, 658
NlaIII	CATG	2 cut(s)	371, 612
NlaIV	GGNNCC	2 cut(s)	231, 376
NspI	RCATGY	1 cut(s)	371
PceI	AGGCCT	2 cut(s)	190, 595
PciI	ACATGT	1 cut(s)	367
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	543, 678
PkrI	GCNGC	2 cut(s)	586, 607
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PscI	ACATGT	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	359
PsiI	TTATAA	2 cut(s)	138, 642
Psp6I	CCWGG	2 cut(s)	450, 492
PspEI	GGTNACC	1 cut(s)	646
PspGI	CCWGG	2 cut(s)	450, 492
PspN4I	GGNNCC	2 cut(s)	231, 376
PspPI	GGNCC	2 cut(s)	308, 482
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	2 cut(s)	200, 376
RsaNI	GTAC	2 cut(s)	199, 375
SaqAI	TTAA	3 cut(s)	159, 173, 359
SatI	GCNGC	2 cut(s)	585, 606
Sau3AI	GATC	6 cut(s)	123, 151, 255, 274, 279, 658
Sau96I	GGNCC	2 cut(s)	308, 482
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	3 cut(s)	385, 452, 494
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	3 cut(s)	28, 424, 625
Sse9I	AATT	3 cut(s)	133, 356, 470
SseBI	AGGCCT	2 cut(s)	190, 595
SsiI	CCGC	1 cut(s)	512
SspMI	CTAG	3 cut(s)	129, 602, 671
StuI	AGGCCT	2 cut(s)	190, 595
StyD4I	CCNGG	3 cut(s)	383, 450, 492
TaaI	ACNGT	3 cut(s)	33, 421, 708
TasI	AATT	3 cut(s)	133, 356, 470
TfiI	GAWTC	2 cut(s)	543, 678
Tru1I	TTAA	3 cut(s)	159, 173, 359
Tru9I	TTAA	3 cut(s)	159, 173, 359
TseI	GCWGC	2 cut(s)	584, 605
VspI	ATTAAT	1 cut(s)	359
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	1 cut(s)	371
XmiI	GTMKAC	3 cut(s)	86, 213, 395
XmnI	GAANNNNTTC	1 cut(s)	692
XspI	CTAG	3 cut(s)	129, 602, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.