Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007806

Physical Location & Seq

Genomic Coordinates Forward (+)

4379708 .. 4385568

Gene Structure 5861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1040400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGGGAAGCGAAGGCCAAGCTTCGACCTCCTCCAACGCCTTCTCCTTCATATCGAAAGGGTGGAGGGAAGTGAAGGACTCGGCCGATGCGGATCTCCAATTGATGAAGCACCGGGCCAACGAGTTCAAGAACCTAGCGACGTCGTTCGACCGCGAGCTCGAGAACCTGTTCAAGTTTAACTCCGCGTCCTCGGCGGGGATTCGGTCGTCGGCGTCGCCGCCGGCAGAGATTGACTTCGTCAAGAAGCTGAAGCCGAAGCTGTCGGAGTTTCGGAGGGTGTACTCGTCGCCGGACTTCAGCAAGAAGGTTCTGGAGAAGTGGAGCCCCAGGTCGAGGATCCGGATCAATTTGTCGGCGATAAAGAATGCGCTGGTGTCGGAGGTGGAGGACAGGGATGGGGTTATGGAATTTAATAGGGGTATTAGGGGAAGGCCATTGAAGTTCAGTGAGTTTTGGGGCGAGTGGAAGGGAGAGGGTGAGGGGGAGGATGAGGAGAGACAATCCATTAAGGACTGGGAACCAATTCGGGCGTTGAAGACTCGATTGAAAGAGTTCGAAAAGCGGGAATTTCTCGGTGGATTTAAGAACAGTGAGTTTGTGGAGAAATTCAAGTCCAGCTTGAAGTCAATTTACAAGGAGCGTGAGGAGTCAAAGGCAGTACCTCCTTTGGATGTGACAGAACTTTTGGCATGTTTGGTTAGGCAATCTGAGCCTTTTCTCGATCAACTTGGCGTTAGGAGAAATGTGTGTGAGAAACTAGTGGAAAGCTTGTGCAGCAAATACAAGAACCAAGTTCTGCACTCACATTCTTCTGGAGACTCATCTCTTATAGACAGTGAAAACATGAATGATGAATTAGATTTAAGGATAGCCAGCGTCATCCAAAGCACAGGGCATTCTTATGATGGTGGGTTTTGGACAGACCATGCAAAACATGACCAGTCAGATGAGAAAAGACATGTTGCTATTGTCACAACTGCTAGTCTTCCTTGGATGACAGGAACAGCAGTGAATCCACTGTTTCGTGCTGCATATCTTGCAGAGTCTGCGAAACAGAATGTTACATTATTAGTTCCATGGCTTTGTAAATCAGATCAAGAACTTGTATATCCTAGCAACATTACTTTTACTTCACCAGAAGAGCAGGAAATTTATATCCGTAACTGGCTTGAGGAAAGGATTGGCTTTAAAGCGGACTTTAAGATATCATTTTATCCAGGAAAGTTTTCAAAAGCAAGGCGAAGCATTTTACCAGCTGGGGACACTACTCGGTTTATTCAGTCCAAGGATGCTGACATTGCTATCCTGGAAGAACCGGAACACTTGAATTGGTATCATCATGGTAAGCGTTGGACCGATAAATTTAACCATGTTGTTGGTGTTGTTCACACAAATTACTTGGAATATATCAAGAGGGAGAAGAATGGTGCTCTCCAAGCCTTCTTTGTGAAGCACATAAACAATTGGGTCACAAGAGCATACTGCGACAAAGTTCTTCGCCTTTCCTCTGCCACACAGGATTTACCTAAGTCTCTGATTTGCAATGTCCATGGCGTGAATCCCAAGTTCTTGAGAATTGGAGAAAAGGTCGCTGCAGAAAGGGAACTTGGACAGGAAGCATTCTCAAAAGGAGCATACTTCTTAGGGAAGATGGTCTGGGCAAAGGGATACCGTGAGCTTATAGATGTGTTGGCAAAGCACAAGTGTGACCTTGATGGCTTCAAGTTGGACGTGTATGGAAATGGAGAGGACGCCAATGAAGTTCAGAGTACGGCTAAAAGCTTGGATTTAAATCTCAACTTTCTGAAAGGAAGAGACCATGCAGATCATTCTCTTCACGGGTACAAAGTCTTCATAAATCCCAGCGTTAGTGATGTGCTGTGCACGGCTACTGCTGAGGCTCTTGCTATGGGAAAATTTGTAATTTGTGCGGATCATCCATCAAATGAGTTTTTCAGATCATTTCCTAATTGCTTGACCTACAAAACATCCGAGGAATTTGTTGCCAAAGTGAAGGAAGCAATGGCATTTAATCCTCAGCCCCTTACTCCCGAGCAAAGATATCATCTTTCGTGGGAAGCTGCTACCCAGAGGTTTATGGAGTATTCTGAGCTTGACAGAGTCTTGAACAAAGACAACGATGGTGCAAAATCAAGCACGGGAAATCGAAAGAGGATCCCAAAATCCGCATCAATGCCTAGCTTGACAGGTATGGTTGACGGAGGATTGGCATTTGCCCACTACTGTCTCACCGGCAATGAATTCCTTAGACTATGCACCGGAGCAATTCCCGGAAGCCGAGACTATGACAAGCAACACTGCAAAGACCTTCATCTCTTGCCTCCCCAGGTAGAGAATCCAATATATGGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006664 GO:0006725 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009698 GO:0009699 GO:0009707 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009867 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0019374 GO:0019375 GO:0019438 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031323 GO:0031407 GO:0031408 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0032870 GO:0035250 GO:0042170 GO:0042221 GO:0042548 GO:0042550 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0046467 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

792

Amino Acids

89.87

Weight (kDa)

7.59

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_1	PF00534	546 - 652	8.8e-11	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	546 - 674	2.4e-10	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11670 AT3G11670
fragaria_vesca	FvH4_6g20320
malus_domestica	MD12G1040400.v1.1 MD14G1039100.v1.1
prunus_persica	Prupe.7G094500_v2.0.a1
pyrus_communis	pycom12g03450 pycom14g03360
rosa_chinensis	RchiOBHm_Chr3g0475941
rosa_laevigata	RLG00000023798
rosa_multiflora	Rmu_sc0000441.1_g000087 Rmu_sc0000596.1_g000001 Rmu_sc0001809.1_g000063
rosa_roxburghii	Rroxscaffold_6G00405710
rosa_rugosa	Rorug03G0152000 Rorug03G0152100 Rorug03G0152100 Rorug03G0152200
rosa_samantha	Rh2BG524200 Rh3AG203000 Rh3BG232800 Rh3CG228300 Rh3DG228500
rosa_wichuraiana	Rw3G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	2366
AccII	CGCG	2 cut(s)	153, 185
AccIII	TCCGGA	1 cut(s)	339
AciI	CCGC	9 cut(s)	89, 151, 183, 194, 218, 562, 1193, 1931, 2187
AclWI	GGATC	7 cut(s)	99, 331, 344, 350, 1941, 2170, 2183
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	8 cut(s)	407, 566, 605, 1149, 1361, 1916, 1997, 2261
AcuI	CTGAAG	2 cut(s)	269, 280
AcyI	GRCGYC	3 cut(s)	140, 212, 1752
AfaI	GTAC	4 cut(s)	281, 660, 1771, 1844
AfiI	CCNNNNNNNGG	3 cut(s)	195, 333, 2366
AflIII	ACRYGT	2 cut(s)	958, 1731
AhlI	ACTAGT	1 cut(s)	757
AjiI	CACGTC	1 cut(s)	1732
AjnI	CCWGG	4 cut(s)	326, 1216, 1305, 2346
AjuI	GAANNNNNNNTTGG	2 cut(s)	1590, 1622
AleI	CACNNNNGTG	1 cut(s)	1704
Alw21I	GWGCWC	3 cut(s)	159, 1432, 1886
Alw26I	GTCTC	6 cut(s)	490, 810, 1536, 1809, 2252, 2295
Alw44I	GTGCAC	1 cut(s)	1882
AlwI	GGATC	7 cut(s)	99, 331, 344, 350, 1941, 2170, 2183
AlwNI	CAGNNNCTG	1 cut(s)	1046
Ama87I	CYCGRG	2 cut(s)	158, 2051
Aor13HI	TCCGGA	1 cut(s)	339
AoxI	GGCC	4 cut(s)	13, 81, 114, 431
ApaLI	GTGCAC	1 cut(s)	1882
ApeKI	GCWGC	4 cut(s)	774, 1028, 1592, 2081
ApoI	RAATTY	8 cut(s)	407, 566, 605, 1149, 1361, 1916, 1997, 2261
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
Asp700I	GAANNNNTTC	4 cut(s)	167, 522, 551, 1225
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	114, 1353
AsuC2I	CCSGG	2 cut(s)	113, 2292
AsuHPI	GGTGA	3 cut(s)	488, 1125, 2242
AsuII	TTCGAA	1 cut(s)	555
AvaI	CYCGRG	2 cut(s)	158, 2051
AvaII	GGWCC	1 cut(s)	1353
BaeGI	GKGCMC	1 cut(s)	1886
BamHI	GGATCC	2 cut(s)	336, 2175
BanII	GRGCYC	2 cut(s)	159, 326
BarI	GAAGNNNNNNTAC	4 cut(s)	614, 646, 1835, 1867
BbsI	GAAGAC	3 cut(s)	542, 977, 1843
Bbv12I	GWGCWC	3 cut(s)	159, 1432, 1886
BbvCI	CCTCAGC	2 cut(s)	1896, 2037
BbvI	GCAGC	4 cut(s)	786, 1015, 1579, 2068
BccI	CCATC	6 cut(s)	389, 899, 1645, 1709, 1948, 2135
BceAI	ACGGC	2 cut(s)	1788, 1902
BciT130I	CCWGG	4 cut(s)	328, 1218, 1307, 2348
BciVI	GTATCC	1 cut(s)	1661
BcnI	CCSGG	2 cut(s)	113, 2292
BcoDI	GTCTC	6 cut(s)	490, 810, 1536, 1809, 2252, 2295
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	5 cut(s)	134, 758, 981, 1113, 2199
BfmI	CTRYAG	1 cut(s)	1593
BfuI	GTATCC	1 cut(s)	1661
BisI	GCNGC	5 cut(s)	218, 775, 1029, 1593, 2082
BlsI	GCNGC	5 cut(s)	219, 776, 1030, 1594, 2083
Bme1390I	CCNGG	6 cut(s)	113, 328, 1218, 1307, 2292, 2348
Bme18I	GGWCC	1 cut(s)	1353
BmeT110I	CYCGRG	2 cut(s)	158, 2051
BmgBI	CACGTC	1 cut(s)	1732
BmgT120I	GGNCC	2 cut(s)	114, 1353
BmiI	GGNNCC	4 cut(s)	323, 338, 519, 2177
BmrFI	CCNGG	6 cut(s)	113, 328, 1218, 1307, 2292, 2348
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	3 cut(s)	76, 1279, 2198
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	3 cut(s)	542, 977, 1843
BpmI	CTGGAG	2 cut(s)	332, 834
Bpu10I	CCTNAGC	2 cut(s)	1896, 2037
Bpu14I	TTCGAA	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	1190, 1591
BpuMI	CCSGG	2 cut(s)	113, 2292
BsaBI	GATNNNNATC	3 cut(s)	90, 341, 1791
BsaHI	GRCGYC	3 cut(s)	140, 212, 1752
BsaI	GGTCTC	1 cut(s)	1809
BsaJI	CCNNGG	8 cut(s)	189, 326, 989, 1076, 1284, 1549, 1992, 2346
BsaWI	WCCGGW	3 cut(s)	339, 1315, 2279
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 1572, 1602
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 333, 2366
Bse118I	RCCGGY	2 cut(s)	220, 2252
Bse1I	ACTGG	3 cut(s)	518, 940, 1169
Bse3DI	GCAATG	4 cut(s)	1296, 1549, 2028, 2263
Bse8I	GATNNNNATC	3 cut(s)	90, 341, 1791
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	4 cut(s)	328, 1218, 1307, 2348
BseDI	CCNNGG	8 cut(s)	189, 326, 989, 1076, 1284, 1549, 1992, 2346
BseGI	GGATG	8 cut(s)	400, 493, 676, 879, 999, 1294, 1936, 1988
BseJI	GATNNNNATC	3 cut(s)	90, 341, 1791
BseLI	CCNNNNNNNGG	3 cut(s)	195, 333, 2366
BseMI	GCAATG	4 cut(s)	1296, 1549, 2028, 2263
BseMII	CTCAG	4 cut(s)	699, 1887, 2051, 2100
BseNI	ACTGG	3 cut(s)	518, 940, 1169
BseRI	GAGGAG	3 cut(s)	19, 506, 659
BseSI	GKGCMC	1 cut(s)	1886
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	4 cut(s)	786, 1015, 1579, 2068
BseYI	CCCAGC	2 cut(s)	1256, 1862
BsgI	GTGCAG	2 cut(s)	782, 793
Bsh1236I	CGCG	2 cut(s)	153, 185
Bsh1285I	CGRYCG	3 cut(s)	84, 151, 206
BshFI	GGCC	4 cut(s)	15, 83, 116, 433
BsiEI	CGRYCG	3 cut(s)	84, 151, 206
BsiHKAI	GWGCWC	3 cut(s)	159, 1432, 1886
BsiHKCI	CYCGRG	2 cut(s)	158, 2051
BsiSI	CCGG	8 cut(s)	112, 221, 290, 340, 1316, 2253, 2280, 2292
BslFI	GGGAC	1 cut(s)	1274
BslI	CCNNNNNNNGG	3 cut(s)	195, 333, 2366
BsmAI	GTCTC	6 cut(s)	490, 810, 1536, 1809, 2252, 2295
BsmFI	GGGAC	1 cut(s)	1274
BsmI	GAATGC	3 cut(s)	370, 895, 1619
BsnI	GGCC	4 cut(s)	15, 83, 116, 433
Bso31I	GGTCTC	1 cut(s)	1809
BsoBI	CYCGRG	2 cut(s)	158, 2051
Bsp119I	TTCGAA	1 cut(s)	555
Bsp1286I	GDGCHC	4 cut(s)	159, 326, 1432, 1886
Bsp13I	TCCGGA	1 cut(s)	339
Bsp143I	GATC	9 cut(s)	91, 336, 342, 721, 1093, 1825, 1933, 1958, 2175
Bsp19I	CCATGG	2 cut(s)	1076, 1549
BspACI	CCGC	9 cut(s)	89, 151, 183, 194, 218, 562, 1193, 1931, 2187
BspANI	GGCC	4 cut(s)	15, 83, 116, 433
BspCNI	CTCAG	4 cut(s)	700, 1888, 2050, 2101
BspEI	TCCGGA	1 cut(s)	339
BspFNI	CGCG	2 cut(s)	153, 185
BspLI	GGNNCC	4 cut(s)	323, 338, 519, 2177
BspMAI	CTGCAG	1 cut(s)	1597
BspPI	GGATC	7 cut(s)	99, 331, 344, 350, 1941, 2170, 2183
BspQI	GCTCTTC	1 cut(s)	1134
BspT104I	TTCGAA	1 cut(s)	555
BspTNI	GGTCTC	1 cut(s)	1809
BsrDI	GCAATG	4 cut(s)	1296, 1549, 2028, 2263
BsrFI	RCCGGY	2 cut(s)	220, 2252
BsrI	ACTGG	3 cut(s)	518, 940, 1169
BssAI	RCCGGY	2 cut(s)	220, 2252
BssECI	CCNNGG	8 cut(s)	189, 326, 989, 1076, 1284, 1549, 1992, 2346
BssMI	GATC	9 cut(s)	91, 336, 342, 721, 1093, 1825, 1933, 1958, 2175
BssNI	GRCGYC	3 cut(s)	140, 212, 1752
BssT1I	CCWWGG	4 cut(s)	989, 1076, 1284, 1549
Bst2UI	CCWGG	4 cut(s)	328, 1218, 1307, 2348
Bst4CI	ACNGT	5 cut(s)	590, 836, 1020, 1673, 2246
Bst6I	CTCTTC	3 cut(s)	1134, 1807, 1839
BstACI	GRCGYC	3 cut(s)	140, 212, 1752
BstAPI	GCANNNNNTGC	2 cut(s)	1037, 1046
BstBI	TTCGAA	1 cut(s)	555
BstC8I	GCNNGC	3 cut(s)	155, 222, 874
BstDEI	CTNAG	7 cut(s)	708, 1527, 1642, 1896, 2037, 2109, 2267
BstDSI	CCRYGG	2 cut(s)	1076, 1549
BstF5I	GGATG	8 cut(s)	400, 493, 676, 879, 999, 1294, 1936, 1988
BstFNI	CGCG	2 cut(s)	153, 185
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	9 cut(s)	94, 339, 345, 724, 1096, 1828, 1936, 1961, 2178
BstMAI	GTCTC	6 cut(s)	490, 810, 1536, 1809, 2252, 2295
BstMBI	GATC	9 cut(s)	91, 336, 342, 721, 1093, 1825, 1933, 1958, 2175
BstMCI	CGRYCG	3 cut(s)	84, 151, 206
BstMWI	GCNNNNNNNGC	7 cut(s)	191, 709, 774, 1037, 1046, 1298, 1436
BstNI	CCWGG	4 cut(s)	328, 1218, 1307, 2348
BstNSI	RCATGY	2 cut(s)	693, 962
BstSCI	CCNGG	6 cut(s)	111, 326, 1216, 1305, 2290, 2346
BstSFI	CTRYAG	1 cut(s)	1593
BstSLI	GKGCMC	1 cut(s)	1886
BstUI	CGCG	2 cut(s)	153, 185
BstV1I	GCAGC	4 cut(s)	786, 1015, 1579, 2068
BstV2I	GAAGAC	3 cut(s)	542, 977, 1843
BstX2I	RGATCY	3 cut(s)	91, 336, 2175
BstXI	CCANNNNNNTGG	1 cut(s)	1376
BstYI	RGATCY	3 cut(s)	91, 336, 2175
BstZI	CGGCCG	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	1661
BsuRI	GGCC	4 cut(s)	15, 83, 116, 433
BtgI	CCRYGG	2 cut(s)	1076, 1549
BtrI	CACGTC	1 cut(s)	1732
BtsCI	GGATG	8 cut(s)	400, 493, 676, 879, 999, 1294, 1936, 1988
BtsI	GCAGTG	2 cut(s)	1014, 2317
BtsIMutI	CAGTG	6 cut(s)	451, 595, 841, 1014, 1016, 2317
Cac8I	GCNNGC	3 cut(s)	155, 222, 874
CaiI	CAGNNNCTG	1 cut(s)	1046
CfoI	GCGC	1 cut(s)	370
Cfr10I	RCCGGY	2 cut(s)	220, 2252
Cfr13I	GGNCC	2 cut(s)	114, 1353
CseI	GACGC	4 cut(s)	174, 201, 865, 1760
Csp6I	GTAC	4 cut(s)	280, 659, 1770, 1843
CviQI	GTAC	4 cut(s)	280, 659, 1770, 1843
DdeI	CTNAG	7 cut(s)	708, 1527, 1642, 1896, 2037, 2109, 2267
DpnI	GATC	9 cut(s)	93, 338, 344, 723, 1095, 1827, 1935, 1960, 2177
DpnII	GATC	9 cut(s)	91, 336, 342, 721, 1093, 1825, 1933, 1958, 2175
DraI	TTTAAA	2 cut(s)	1189, 1791
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	3 cut(s)	1134, 1807, 1839
EarI	CTCTTC	3 cut(s)	1134, 1807, 1839
Ecl136II	GAGCTC	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	81
Eco130I	CCWWGG	4 cut(s)	989, 1076, 1284, 1549
Eco24I	GRGCYC	2 cut(s)	159, 326
Eco31I	GGTCTC	1 cut(s)	1809
Eco32I	GATATC	2 cut(s)	1206, 2063
Eco47I	GGWCC	1 cut(s)	1353
Eco52I	CGGCCG	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	269, 280
Eco88I	CYCGRG	2 cut(s)	158, 2051
EcoICRI	GAGCTC	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	2261
EcoRII	CCWGG	4 cut(s)	326, 1216, 1305, 2346
EcoRV	GATATC	2 cut(s)	1206, 2063
EcoT14I	CCWWGG	4 cut(s)	989, 1076, 1284, 1549
EcoT38I	GRGCYC	2 cut(s)	159, 326
ErhI	CCWWGG	4 cut(s)	989, 1076, 1284, 1549
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	1 cut(s)	1274
FauI	CCCGC	2 cut(s)	187, 555
Fnu4HI	GCNGC	5 cut(s)	218, 775, 1029, 1593, 2082
FokI	GGATG	8 cut(s)	407, 500, 683, 866, 1006, 1301, 1923, 1975
FriOI	GRGCYC	2 cut(s)	159, 326
Fsp4HI	GCNGC	5 cut(s)	218, 775, 1029, 1593, 2082
FspBI	CTAG	5 cut(s)	134, 758, 981, 1113, 2199
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	5 cut(s)	218, 775, 1029, 1593, 2082
GsaI	CCCAGC	2 cut(s)	1260, 1866
GsuI	CTGGAG	2 cut(s)	332, 834
HaeIII	GGCC	4 cut(s)	15, 83, 116, 433
HapII	CCGG	8 cut(s)	112, 221, 290, 340, 1316, 2253, 2280, 2292
HgaI	GACGC	4 cut(s)	174, 201, 865, 1760
HhaI	GCGC	1 cut(s)	370
Hin1I	GRCGYC	3 cut(s)	140, 212, 1752
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	2218
HindII	GTYRAC	1 cut(s)	2218
HindIII	AAGCTT	3 cut(s)	18, 766, 1780
HpaII	CCGG	8 cut(s)	112, 221, 290, 340, 1316, 2253, 2280, 2292
HphI	GGTGA	3 cut(s)	488, 1125, 2242
Hpy166II	GTNNAC	4 cut(s)	280, 1387, 1884, 2218
Hpy8I	GTNNAC	4 cut(s)	280, 1387, 1884, 2218
Hpy99I	CGWCG	5 cut(s)	142, 145, 211, 217, 289
HpyCH4III	ACNGT	5 cut(s)	590, 836, 1020, 1673, 2246
HpyCH4IV	ACGT	2 cut(s)	140, 1731
HpyF10VI	GCNNNNNNNGC	7 cut(s)	191, 709, 774, 1037, 1046, 1298, 1436
HpyF3I	CTNAG	7 cut(s)	708, 1527, 1642, 1896, 2037, 2109, 2267
HpySE526I	ACGT	2 cut(s)	140, 1731
Hsp92I	GRCGYC	3 cut(s)	140, 212, 1752
HspAI	GCGC	1 cut(s)	368
Kpn2I	TCCGGA	1 cut(s)	339
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Kzo9I	GATC	9 cut(s)	91, 336, 342, 721, 1093, 1825, 1933, 1958, 2175
LguI	GCTCTTC	1 cut(s)	1134
LmnI	GCTCC	4 cut(s)	321, 637, 1631, 2282
Lsp1109I	GCAGC	4 cut(s)	786, 1015, 1579, 2068
LweI	GCATC	3 cut(s)	76, 1279, 2198
MaeI	CTAG	5 cut(s)	134, 758, 981, 1113, 2199
MaeII	ACGT	2 cut(s)	140, 1731
MaeIII	GTNAC	6 cut(s)	673, 970, 1060, 1160, 1468, 1706
MalI	GATC	9 cut(s)	93, 338, 344, 723, 1095, 1827, 1935, 1960, 2177
MboI	GATC	9 cut(s)	91, 336, 342, 721, 1093, 1825, 1933, 1958, 2175
MfeI	CAATTG	2 cut(s)	98, 1462
MflI	RGATCY	3 cut(s)	91, 336, 2175
MhlI	GDGCHC	4 cut(s)	159, 326, 1432, 1886
MlyI	GAGTC	6 cut(s)	71, 532, 656, 812, 1052, 2130
MmeI	TCCRAC	5 cut(s)	57, 243, 357, 1331, 1707
MroI	TCCGGA	1 cut(s)	339
MroNI	GCCGGC	1 cut(s)	220
MroXI	GAANNNNTTC	4 cut(s)	167, 522, 551, 1225
MslI	CAYNNNNRTG	2 cut(s)	900, 1704
MspA1I	CMGCKG	1 cut(s)	1256
MspI	CCGG	8 cut(s)	112, 221, 290, 340, 1316, 2253, 2280, 2292
MspR9I	CCNGG	6 cut(s)	113, 328, 1218, 1307, 2292, 2348
MunI	CAATTG	2 cut(s)	98, 1462
Mva1269I	GAATGC	3 cut(s)	370, 895, 1619
MvaI	CCWGG	4 cut(s)	328, 1218, 1307, 2348
MvnI	CGCG	2 cut(s)	153, 185
MwoI	GCNNNNNNNGC	7 cut(s)	191, 709, 774, 1037, 1046, 1298, 1436
NaeI	GCCGGC	1 cut(s)	222
NciI	CCSGG	2 cut(s)	113, 2292
NcoI	CCATGG	2 cut(s)	1076, 1549
NdeII	GATC	9 cut(s)	91, 336, 342, 721, 1093, 1825, 1933, 1958, 2175
NgoMIV	GCCGGC	1 cut(s)	220
NlaIV	GGNNCC	4 cut(s)	323, 338, 519, 2177
NmeAIII	GCCGAG	3 cut(s)	59, 170, 2324
NmuCI	GTSAC	4 cut(s)	673, 970, 1468, 1706
NspI	RCATGY	2 cut(s)	693, 962
NspV	TTCGAA	1 cut(s)	555
OliI	CACNNNNGTG	1 cut(s)	1704
PaeR7I	CTCGAG	1 cut(s)	158
PciI	ACATGT	1 cut(s)	958
PciSI	GCTCTTC	1 cut(s)	1134
PctI	GAATGC	3 cut(s)	370, 895, 1619
PdiI	GCCGGC	1 cut(s)	222
PdmI	GAANNNNTTC	4 cut(s)	167, 522, 551, 1225
PfeI	GAWTC	4 cut(s)	199, 1012, 1558, 2356
PflFI	GACNNNGTC	2 cut(s)	236, 2120
PflMI	CCANNNNNTGG	1 cut(s)	2366
PfoI	TCCNGGA	3 cut(s)	1216, 1305, 2290
PkrI	GCNGC	5 cut(s)	219, 776, 1030, 1594, 2083
PleI	GAGTC	6 cut(s)	71, 532, 655, 812, 1051, 2129
PpsI	GAGTC	6 cut(s)	71, 532, 655, 812, 1051, 2129
PscI	ACATGT	1 cut(s)	958
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	4 cut(s)	326, 1216, 1305, 2346
PspFI	CCCAGC	2 cut(s)	1256, 1862
PspGI	CCWGG	4 cut(s)	326, 1216, 1305, 2346
PspN4I	GGNNCC	4 cut(s)	323, 338, 519, 2177
PspPI	GGNCC	2 cut(s)	114, 1353
PstI	CTGCAG	1 cut(s)	1597
PstNI	CAGNNNCTG	1 cut(s)	1046
PsuI	RGATCY	3 cut(s)	91, 336, 2175
PsyI	GACNNNGTC	2 cut(s)	236, 2120
PvuII	CAGCTG	1 cut(s)	1256
RsaI	GTAC	4 cut(s)	281, 660, 1771, 1844
RsaNI	GTAC	4 cut(s)	280, 659, 1770, 1843
RseI	CAYNNNNRTG	2 cut(s)	900, 1704
SacI	GAGCTC	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	1134
SatI	GCNGC	5 cut(s)	218, 775, 1029, 1593, 2082
Sau3AI	GATC	9 cut(s)	91, 336, 342, 721, 1093, 1825, 1933, 1958, 2175
Sau96I	GGNCC	2 cut(s)	114, 1353
SchI	GAGTC	6 cut(s)	71, 532, 656, 812, 1052, 2130
ScrFI	CCNGG	6 cut(s)	113, 328, 1218, 1307, 2292, 2348
SduI	GDGCHC	4 cut(s)	159, 326, 1432, 1886
SfaNI	GCATC	3 cut(s)	76, 1279, 2198
SfcI	CTRYAG	1 cut(s)	1593
Sfr274I	CTCGAG	1 cut(s)	158
SfuI	TTCGAA	1 cut(s)	555
SinI	GGWCC	1 cut(s)	1353
SlaI	CTCGAG	1 cut(s)	158
SmiI	ATTTAAAT	1 cut(s)	1791
SmiMI	CAYNNNNRTG	2 cut(s)	900, 1704
SmlI	CTYRAG	3 cut(s)	158, 1169, 1570
SmoI	CTYRAG	3 cut(s)	158, 1169, 1570
SpeI	ACTAGT	1 cut(s)	757
SsiI	CCGC	9 cut(s)	89, 151, 183, 194, 218, 562, 1193, 1931, 2187
SspMI	CTAG	5 cut(s)	134, 758, 981, 1113, 2199
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	6 cut(s)	111, 326, 1216, 1305, 2290, 2346
StyI	CCWWGG	4 cut(s)	989, 1076, 1284, 1549
SwaI	ATTTAAAT	1 cut(s)	1791
TaaI	ACNGT	5 cut(s)	590, 836, 1020, 1673, 2246
TaiI	ACGT	2 cut(s)	143, 1734
TaqI	TCGA	9 cut(s)	23, 53, 147, 159, 332, 541, 555, 720, 2167
TaqII	GACCGA	2 cut(s)	192, 1370
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	4 cut(s)	199, 1012, 1558, 2356
TscAI	CASTG	6 cut(s)	451, 595, 841, 1014, 1023, 2324
TseFI	GTSAC	4 cut(s)	673, 970, 1468, 1706
TseI	GCWGC	4 cut(s)	774, 1028, 1592, 2081
Tsp45I	GTSAC	4 cut(s)	673, 970, 1468, 1706
TspDTI	ATGAA	8 cut(s)	37, 119, 860, 867, 1773, 1843, 2274, 2321
TspGWI	ACGGA	2 cut(s)	1148, 2235
TspRI	CASTG	6 cut(s)	451, 595, 841, 1014, 1023, 2324
Tth111I	GACNNNGTC	2 cut(s)	236, 2120
Van91I	CCANNNNNTGG	1 cut(s)	2366
VneI	GTGCAC	1 cut(s)	1882
VpaK11BI	GGWCC	1 cut(s)	1353
XapI	RAATTY	8 cut(s)	407, 566, 605, 1149, 1361, 1916, 1997, 2261
XceI	RCATGY	2 cut(s)	693, 962
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2367
XhoI	CTCGAG	1 cut(s)	158
XmnI	GAANNNNTTC	4 cut(s)	167, 522, 551, 1225
XspI	CTAG	5 cut(s)	134, 758, 981, 1113, 2199
ZraI	GACGTC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.