Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001809.1

Orthogroup ID

OG0007806

Physical Location & Seq

Genomic Coordinates Reverse (-)

335034 .. 336598

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001809.1_g000063.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggccggagacggacaagcgtcgacgtcgaacgcgttctcgttcatatcgaaggggtggagggaagtgaaggactcggcggacgcggatctccaattgatgaaggaccgagccaactcgttcaagaacttggcgacttccttcgaccgcgagctcgagaacttgttcaactcggcgaccgcaatccggtcgtcttcgtcgctgtcgcggccgacggagatcgacttcgtgaagaagctgcagccgaagctggtggagattcggagggcgtactcgtcgccggatttcagcaagaaggtgctggagaaatggaccccgaggtcgacgattcggattgatttgtcggcgataaagaatgctatagtgtcggaggtggagagcagggaagggatggcggagtttgataggattaggcggaggaggagtttgaagtttagtgagttttggggagagtggaagagagacggtgatgatgaggagaaacagtccagtagggattgggagccaattcgagtgttgaagacgagattgaaagagtttgagaagcgtgaatttctcggtgggtttaagaacagtgagtttgtggagaaggtcaagtccagcttgaaatcagtttacaaggattctcaggagtcacaggtttgtatctacgcaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006664 GO:0006725 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009698 GO:0009699 GO:0009707 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009867 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0019374 GO:0019375 GO:0019438 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031323 GO:0031407 GO:0031408 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0032870 GO:0035250 GO:0042170 GO:0042221 GO:0042548 GO:0042550 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0046467 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

219

Amino Acids

25.33

Weight (kDa)

9.32

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11670 AT3G11670
fragaria_vesca	FvH4_6g20320
malus_domestica	MD12G1040400.v1.1 MD14G1039100.v1.1
prunus_persica	Prupe.7G094500_v2.0.a1
pyrus_communis	pycom12g03450 pycom14g03360
rosa_chinensis	RchiOBHm_Chr3g0475941
rosa_laevigata	RLG00000023798
rosa_multiflora	Rmu_sc0000441.1_g000087 Rmu_sc0000596.1_g000001 Rmu_sc0001809.1_g000063
rosa_roxburghii	Rroxscaffold_6G00405710
rosa_rugosa	Rorug03G0152000 Rorug03G0152100 Rorug03G0152100 Rorug03G0152200
rosa_samantha	Rh2BG524200 Rh3AG203000 Rh3BG232800 Rh3CG228300 Rh3DG228500
rosa_wichuraiana	Rw3G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	319
AatII	GACGTC	1 cut(s)	29
AccI	GTMKAC	2 cut(s)	23, 323
AccII	CGCG	4 cut(s)	35, 86, 150, 208
AciI	CCGC	7 cut(s)	80, 86, 148, 180, 208, 395, 415
AclWI	GGATC	1 cut(s)	96
AcoI	YGGCCR	2 cut(s)	3, 209
AcsI	RAATTY	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	6 cut(s)	124, 169, 430, 520, 532, 607
AluBI	AGCT	4 cut(s)	154, 238, 250, 603
AluI	AGCT	4 cut(s)	154, 238, 250, 603
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	3, 456
AlwI	GGATC	1 cut(s)	96
Ama87I	CYCGRG	2 cut(s)	155, 316
AoxI	GGCC	2 cut(s)	3, 209
ApeKI	GCWGC	2 cut(s)	238, 241
ApoI	RAATTY	1 cut(s)	551
Asp700I	GAANNNNTTC	2 cut(s)	35, 164
AspS9I	GGNCC	2 cut(s)	106, 312
AsuHPI	GGTGA	1 cut(s)	479
AvaI	CYCGRG	2 cut(s)	155, 316
AvaII	GGWCC	2 cut(s)	106, 312
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	2 cut(s)	186, 527
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	225, 253
BccI	CCATC	1 cut(s)	385
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BcoDI	GTCTC	2 cut(s)	3, 456
BfmI	CTRYAG	2 cut(s)	239, 360
BisI	GCNGC	3 cut(s)	209, 239, 242
BlsI	GCNGC	3 cut(s)	210, 240, 243
Bme18I	GGWCC	2 cut(s)	106, 312
BmeT110I	CYCGRG	2 cut(s)	155, 316
BmgT120I	GGNCC	2 cut(s)	106, 312
BmiI	GGNNCC	2 cut(s)	314, 504
BoxI	GACNNNNGTC	1 cut(s)	19
BpiI	GAAGAC	2 cut(s)	186, 527
BpmI	CTGGAG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	317
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	4 cut(s)	409, 439, 470, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	1 cut(s)	489
BseRI	GAGGAG	3 cut(s)	433, 436, 491
BseX3I	CGGCCG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	225, 253
Bsh1236I	CGCG	4 cut(s)	35, 86, 150, 208
Bsh1285I	CGRYCG	4 cut(s)	148, 180, 191, 212
BshFI	GGCC	2 cut(s)	5, 211
BsiEI	CGRYCG	4 cut(s)	148, 180, 191, 212
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	2 cut(s)	155, 316
BsiSI	CCGG	3 cut(s)	6, 187, 281
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	2 cut(s)	3, 456
BsmBI	CGTCTC	2 cut(s)	3, 456
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	5, 211
BsoBI	CYCGRG	2 cut(s)	155, 316
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	88, 219
BspACI	CCGC	7 cut(s)	80, 86, 148, 180, 208, 395, 415
BspANI	GGCC	2 cut(s)	5, 211
BspCNI	CTCAG	1 cut(s)	640
BspFNI	CGCG	4 cut(s)	35, 86, 150, 208
BspLI	GGNNCC	2 cut(s)	314, 504
BspMAI	CTGCAG	1 cut(s)	243
BspPI	GGATC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	2 cut(s)	88, 219
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	3 cut(s)	467, 486, 575
Bst6I	CTCTTC	1 cut(s)	452
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	627
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	4 cut(s)	35, 86, 150, 208
BstKTI	GATC	2 cut(s)	91, 222
BstMAI	GTCTC	2 cut(s)	3, 456
BstMBI	GATC	2 cut(s)	88, 219
BstMCI	CGRYCG	4 cut(s)	148, 180, 191, 212
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 247
BstPAI	GACNNNNGTC	1 cut(s)	19
BstSFI	CTRYAG	2 cut(s)	239, 360
BstUI	CGCG	4 cut(s)	35, 86, 150, 208
BstV1I	GCAGC	2 cut(s)	225, 253
BstV2I	GAAGAC	2 cut(s)	186, 527
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BstZI	CGGCCG	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	5, 211
BtsCI	GGATG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	580
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	106, 312
CseI	GACGC	2 cut(s)	9, 92
Csp6I	GTAC	1 cut(s)	271
CviJI	RGCY	9 cut(s)	5, 113, 154, 211, 238, 244, 250, 505, 603
CviKI_1	RGCY	9 cut(s)	5, 113, 154, 211, 238, 244, 250, 505, 603
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	627
DpnI	GATC	2 cut(s)	90, 221
DpnII	GATC	2 cut(s)	88, 219
DrdI	GACNNNNNNGTC	1 cut(s)	319
DseDI	GACNNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	2 cut(s)	3, 209
EagI	CGGCCG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
EciI	GGCGGA	3 cut(s)	95, 410, 430
Ecl136II	GAGCTC	1 cut(s)	154
EclXI	CGGCCG	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	106, 312
Eco52I	CGGCCG	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	154
Eco88I	CYCGRG	2 cut(s)	155, 316
EcoICRI	GAGCTC	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	156
Esp3I	CGTCTC	2 cut(s)	3, 456
FaiI	YATR	3 cut(s)	47, 362, 658
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FblI	GTMKAC	2 cut(s)	23, 323
Fnu4HI	GCNGC	3 cut(s)	209, 239, 242
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	209, 239, 242
GluI	GCNGC	3 cut(s)	209, 239, 242
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	2 cut(s)	5, 211
HapII	CCGG	3 cut(s)	6, 187, 281
HgaI	GACGC	2 cut(s)	9, 92
Hin1I	GRCGYC	1 cut(s)	26
HincII	GTYRAC	2 cut(s)	24, 324
HindII	GTYRAC	2 cut(s)	24, 324
HinfI	GANTC	5 cut(s)	74, 259, 328, 623, 632
HpaII	CCGG	3 cut(s)	6, 187, 281
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	3 cut(s)	24, 324, 616
Hpy188I	TCNGA	3 cut(s)	264, 333, 370
Hpy188III	TCNNGA	4 cut(s)	124, 157, 229, 629
Hpy8I	GTNNAC	3 cut(s)	24, 324, 616
Hpy99I	CGWCG	7 cut(s)	25, 28, 31, 202, 217, 280, 328
HpyAV	CCTTC	7 cut(s)	46, 64, 97, 151, 289, 380, 583
HpyCH4III	ACNGT	3 cut(s)	467, 486, 575
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 247
HpyF3I	CTNAG	1 cut(s)	627
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	88, 219
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	2 cut(s)	225, 253
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	633
MalI	GATC	2 cut(s)	90, 221
MboI	GATC	2 cut(s)	88, 219
MboII	GAAGA	4 cut(s)	186, 244, 469, 532
MfeI	CAATTG	1 cut(s)	95
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	3 cut(s)	95, 507, 551
MluI	ACGCGT	1 cut(s)	33
MlyI	GAGTC	2 cut(s)	68, 641
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	7 cut(s)	54, 258, 312, 364, 411, 414, 469
MroXI	GAANNNNTTC	2 cut(s)	35, 164
MseI	TTAA	1 cut(s)	567
MspI	CCGG	3 cut(s)	6, 187, 281
MunI	CAATTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	361
MvnI	CGCG	4 cut(s)	35, 86, 150, 208
MwoI	GCNNNNNNNGC	2 cut(s)	208, 247
NdeII	GATC	2 cut(s)	88, 219
NlaIV	GGNNCC	2 cut(s)	314, 504
NmeAIII	GCCGAG	2 cut(s)	56, 152
NmuCI	GTSAC	1 cut(s)	633
PaeR7I	CTCGAG	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 47
PctI	GAATGC	1 cut(s)	361
PdmI	GAANNNNTTC	2 cut(s)	35, 164
PfeI	GAWTC	3 cut(s)	259, 328, 623
PkrI	GCNGC	3 cut(s)	210, 240, 243
PleI	GAGTC	2 cut(s)	68, 640
PpsI	GAGTC	2 cut(s)	68, 640
PshAI	GACNNNNGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	314, 504
PspPI	GGNCC	2 cut(s)	106, 312
PstI	CTGCAG	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	156
SalI	GTCGAC	2 cut(s)	22, 322
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	3 cut(s)	209, 239, 242
Sau3AI	GATC	2 cut(s)	88, 219
Sau96I	GGNCC	2 cut(s)	106, 312
SchI	GAGTC	2 cut(s)	68, 641
SduI	GDGCHC	1 cut(s)	156
SfcI	CTRYAG	2 cut(s)	239, 360
Sfr274I	CTCGAG	1 cut(s)	155
SgrDI	CGTCGACG	1 cut(s)	22
SinI	GGWCC	2 cut(s)	106, 312
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	95, 507, 551
SsiI	CCGC	7 cut(s)	80, 86, 148, 180, 208, 395, 415
SstI	GAGCTC	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	467, 486, 575
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	8 cut(s)	23, 29, 50, 144, 156, 222, 323, 511
TaqII	GACCGA	1 cut(s)	123
TasI	AATT	3 cut(s)	95, 507, 551
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	3 cut(s)	259, 328, 623
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	633
TseI	GCWGC	2 cut(s)	238, 241
Tsp45I	GTSAC	1 cut(s)	633
TspDTI	ATGAA	2 cut(s)	34, 116
TspGWI	ACGGA	2 cut(s)	27, 230
TspRI	CASTG	1 cut(s)	580
VpaK11BI	GGWCC	2 cut(s)	106, 312
XapI	RAATTY	1 cut(s)	551
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	2 cut(s)	23, 323
XmnI	GAANNNNTTC	2 cut(s)	35, 164
ZraI	GACGTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.