Rorug03G0152200

Digalactosyldiacylglycerol synthase 1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
12487927 .. 12490150
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0152200.1

Sequence Viewer

Length: 1194 bp
ATGGCGGAAACAGACCTACCCGAAGATATTATAGTGACTATCCTCTCTTGGCTTCCCGTGAAATCCTTGATCCGATTCACCTGCGTTTCGAAACGCTTCCGTTTCATTATATTGTCCGACCCCGTATTCGCCAAATCTCAATACAAAGCAGCTTGTGAGCAGAAAACCCTAACTCGCAGACTCCTCTTCCTCTCGTCACACGCCACCCCTCGTCTGGAATTCCTAGACTTGGAAACGCCGTCGTTTGGGGACACTTGTTCGTTTAGAAGTCTGAATTTCCGTTGCCAGAAAGAGGGCGGTTATGTCAGGCTACTGGGGTCCTGCAGTGGACTGCTATTCATTTTAACAGGATTTGATAAATTTCCCGATAAATTTTACATCTGTAACCCATCAACTGGAATGTTGAAGGAACTACCAGACCCTGGTTTTACCGCAAAAAATCCTGATTTCTGGTTCTCCCTCTACCATGGTCTTGGCTATCTGCCTGCTACTGACAACTACAAAGTTTTCGTAGCCTCCGAAAATGTGTACCTCCGTCCTGATCAGGACTTTCTTGAGGTTGAGGCCAAGATGTTCTCAGTAAGAGATCACGTTTGGAAAAGGATTGAACCCCTACCTCAATCATACGATCAATTATTCGATGGTCAGGGGACTGTTTCAAATCATGCACTTCATTGGATATACAGAAAAGACGAGATAGTTGCTTTTGATCTGATTAAGGAGGAGTTCCGGAGCATGCGACTGCCTAATTTCGATGATGTTAGTAATTATACCATCAGCCATCTTGGGGTGTGTCTCGGAGGATGCCTGTCTGTATCTCGAATATCATATTATGGCAGCATTAATTTATGGGTCATGAGAGAGTATGATGTGAGTGACTCCTGGACTGAACTCTTTTACTTGAAGTTCTCCAATCCGATTGAGCCCTGTTCGCGATACATAACACCATTTATTGGGGAAAATAGTATAATTATCAAGGTTTGGGGTGTCAACGGTACGGGTGTCTACAACACCATATTGATGAGGTTTGATGATAAAGGAGAGGCAAATGGCAGGTATATAATTGAGCAAGATCACGTTAACATAATTCAATATGAAGAGAGTCTACTTTGGATTGAAGATTACCATGGCGTCGAACAGAAAGAGCAGCAGGTCAAGAGACTCAAAACCCATCACAAGTCCTTGAAAAGCTGA

Protein Analysis

397

Amino Acids

46.03

Weight (kDa)

5.97

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 43 8.3e-10 F-box domain
F-box-like PF12937 5 - 40 9.5e-08 F-box-like
FBA_3 PF08268 69 - 300 7.3e-12 F-box associated beta propeller domain
FBA_1 PF07734 106 - 325 5.4e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 89
Acc36I ACCTGC 3 cut(s) 89, 1044, 1141
AccB7I CCANNNNNTGG 3 cut(s) 395, 422, 953
AccI GTMKAC 2 cut(s) 1005, 1105
AccII CGCG 1 cut(s) 934
AccIII TCCGGA 1 cut(s) 729
AciI CCGC 3 cut(s) 5, 297, 432
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 4 cut(s) 218, 274, 359, 371
AcyI GRCGYC 1 cut(s) 1131
AfaI GTAC 2 cut(s) 530, 997
AfiI CCNNNNNNNGG 8 cut(s) 214, 229, 245, 292, 395, 422, 787, 953
AgsI TTSAA 7 cut(s) 406, 608, 660, 904, 1091, 1118, 1186
AjnI CCWGG 2 cut(s) 421, 881
AluBI AGCT 2 cut(s) 152, 1191
AluI AGCT 2 cut(s) 152, 1191
Alw26I GTCTC 2 cut(s) 800, 1153
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 422
Aor13HI TCCGGA 1 cut(s) 729
AoxI GGCC 1 cut(s) 564
ApeKI GCWGC 3 cut(s) 149, 837, 1147
ApoI RAATTY 4 cut(s) 218, 274, 359, 371
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AseI ATTAAT 1 cut(s) 843
Asp700I GAANNNNTTC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 70
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 318
BaeI ACNNNNGTAYC 2 cut(s) 987, 1020
BanII GRGCYC 1 cut(s) 927
BarI GAAGNNNNNNTAC 2 cut(s) 1089, 1121
BbvI GCAGC 3 cut(s) 161, 849, 1159
BccI CCATC 5 cut(s) 397, 635, 782, 789, 1179
BceAI ACGGC 1 cut(s) 223
BcgI CGANNNNNNTGC 4 cut(s) 63, 97, 683, 717
BciT130I CCWGG 2 cut(s) 423, 883
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 2 cut(s) 800, 1153
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 322
BfuAI ACCTGC 3 cut(s) 89, 1044, 1141
BisI GCNGC 3 cut(s) 150, 838, 1148
BlsI GCNGC 3 cut(s) 151, 839, 1149
Bme1390I CCNGG 2 cut(s) 423, 883
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 2 cut(s) 423, 883
BmrI ACTGGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 794
BmuI ACTGGG 1 cut(s) 323
Bpu14I TTCGAA 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 1131
BsaJI CCNNGG 3 cut(s) 421, 466, 1126
BsaWI WCCGGW 1 cut(s) 729
Bsc4I CCNNNNNNNGG 8 cut(s) 214, 229, 245, 292, 395, 422, 787, 953
Bse1I ACTGG 2 cut(s) 318, 400
BseAI TCCGGA 1 cut(s) 729
BseBI CCWGG 2 cut(s) 423, 883
BseDI CCNNGG 3 cut(s) 421, 466, 1126
BseGI GGATG 1 cut(s) 809
BseLI CCNNNNNNNGG 8 cut(s) 214, 229, 245, 292, 395, 422, 787, 953
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 2 cut(s) 318, 400
BseRI GAGGAG 2 cut(s) 173, 737
BseXI GCAGC 3 cut(s) 161, 849, 1159
Bsh1236I CGCG 1 cut(s) 934
BshFI GGCC 1 cut(s) 566
BsiSI CCGG 1 cut(s) 730
BslFI GGGAC 2 cut(s) 263, 664
BslI CCNNNNNNNGG 8 cut(s) 214, 229, 245, 292, 395, 422, 787, 953
BsmAI GTCTC 2 cut(s) 800, 1153
BsmFI GGGAC 2 cut(s) 263, 664
BsnI GGCC 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 927
Bsp13I TCCGGA 1 cut(s) 729
Bsp143I GATC 6 cut(s) 69, 541, 586, 628, 709, 1072
Bsp19I CCATGG 2 cut(s) 466, 1126
Bsp68I TCGCGA 1 cut(s) 934
BspACI CCGC 3 cut(s) 5, 297, 432
BspANI GGCC 1 cut(s) 566
BspCNI CTCAG 1 cut(s) 590
BspEI TCCGGA 1 cut(s) 729
BspFNI CGCG 1 cut(s) 934
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 1 cut(s) 319
BspMAI CTGCAG 1 cut(s) 326
BspMI ACCTGC 3 cut(s) 89, 1044, 1141
BspPI GGATC 1 cut(s) 64
BspT104I TTCGAA 1 cut(s) 89
BsrI ACTGG 2 cut(s) 318, 400
BssECI CCNNGG 3 cut(s) 421, 466, 1126
BssMI GATC 6 cut(s) 69, 541, 586, 628, 709, 1072
BssNI GRCGYC 1 cut(s) 1131
BssT1I CCWWGG 2 cut(s) 466, 1126
Bst2UI CCWGG 2 cut(s) 423, 883
Bst4CI ACNGT 2 cut(s) 655, 995
Bst6I CTCTTC 2 cut(s) 191, 1092
BstACI GRCGYC 1 cut(s) 1131
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 486, 737
BstDEI CTNAG 1 cut(s) 577
BstDSI CCRYGG 2 cut(s) 466, 1126
BstF5I GGATG 1 cut(s) 809
BstFNI CGCG 1 cut(s) 934
BstKTI GATC 6 cut(s) 72, 544, 589, 631, 712, 1075
BstMAI GTCTC 2 cut(s) 800, 1153
BstMBI GATC 6 cut(s) 69, 541, 586, 628, 709, 1072
BstMWI GCNNNNNNNGC 1 cut(s) 931
BstNI CCWGG 2 cut(s) 423, 883
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 2 cut(s) 421, 881
BstSFI CTRYAG 1 cut(s) 322
BstUI CGCG 1 cut(s) 934
BstV1I GCAGC 3 cut(s) 161, 849, 1159
BstXI CCANNNNNNTGG 1 cut(s) 473
BsuRI GGCC 1 cut(s) 566
BtgI CCRYGG 2 cut(s) 466, 1126
BtsCI GGATG 1 cut(s) 809
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
BtuMI TCGCGA 1 cut(s) 934
BveI ACCTGC 3 cut(s) 89, 1044, 1141
Cac8I GCNNGC 2 cut(s) 486, 737
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 1 cut(s) 855
Cfr13I GGNCC 1 cut(s) 318
CseI GACGC 1 cut(s) 1120
Csp6I GTAC 2 cut(s) 529, 996
CviAII CATG 5 cut(s) 467, 665, 736, 856, 1127
CviJI RGCY 9 cut(s) 52, 152, 310, 477, 515, 566, 780, 925, 1191
CviKI_1 RGCY 9 cut(s) 52, 152, 310, 477, 515, 566, 780, 925, 1191
CviQI GTAC 2 cut(s) 529, 996
DdeI CTNAG 1 cut(s) 577
DpnI GATC 6 cut(s) 71, 543, 588, 630, 711, 1074
DpnII GATC 6 cut(s) 69, 541, 586, 628, 709, 1072
Eam1104I CTCTTC 2 cut(s) 191, 1092
EarI CTCTTC 2 cut(s) 191, 1092
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 466, 1126
Eco24I GRGCYC 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 318
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 421, 881
EcoT14I CCWWGG 2 cut(s) 466, 1126
EcoT38I GRGCYC 1 cut(s) 927
ErhI CCWWGG 2 cut(s) 466, 1126
FaeI CATG 5 cut(s) 470, 668, 739, 859, 1130
FaqI GGGAC 2 cut(s) 263, 664
FatI CATG 5 cut(s) 466, 664, 735, 855, 1126
FbaI TGATCA 1 cut(s) 541
FblI GTMKAC 2 cut(s) 1005, 1105
Fnu4HI GCNGC 3 cut(s) 150, 838, 1148
FokI GGATG 1 cut(s) 816
FriOI GRGCYC 1 cut(s) 927
Fsp4HI GCNGC 3 cut(s) 150, 838, 1148
FspBI CTAG 1 cut(s) 224
GluI GCNGC 3 cut(s) 150, 838, 1148
HaeIII GGCC 1 cut(s) 566
HapII CCGG 1 cut(s) 730
HgaI GACGC 1 cut(s) 1120
Hin1I GRCGYC 1 cut(s) 1131
Hin1II CATG 5 cut(s) 470, 668, 739, 859, 1130
HincII GTYRAC 2 cut(s) 991, 1081
HindII GTYRAC 2 cut(s) 991, 1081
HinfI GANTC 5 cut(s) 75, 180, 878, 1102, 1161
HpaI GTTAAC 1 cut(s) 1081
HpaII CCGG 1 cut(s) 730
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 6 cut(s) 329, 529, 991, 1006, 1081, 1106
Hpy188I TCNGA 7 cut(s) 74, 118, 273, 520, 714, 800, 918
Hpy8I GTNNAC 6 cut(s) 329, 529, 991, 1006, 1081, 1106
Hpy99I CGWCG 2 cut(s) 244, 1136
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 2 cut(s) 655, 995
HpyCH4IV ACGT 2 cut(s) 591, 1077
HpyCH4V TGCA 2 cut(s) 324, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 931
HpyF3I CTNAG 1 cut(s) 577
HpySE526I ACGT 2 cut(s) 591, 1077
Hsp92I GRCGYC 1 cut(s) 1131
Hsp92II CATG 5 cut(s) 470, 668, 739, 859, 1130
Kpn2I TCCGGA 1 cut(s) 729
Ksp22I TGATCA 1 cut(s) 541
KspAI GTTAAC 1 cut(s) 1081
Kzo9I GATC 6 cut(s) 69, 541, 586, 628, 709, 1072
LmnI GCTCC 1 cut(s) 732
Lsp1109I GCAGC 3 cut(s) 161, 849, 1159
LweI GCATC 1 cut(s) 794
MaeI CTAG 1 cut(s) 224
MaeII ACGT 2 cut(s) 591, 1077
MaeIII GTNAC 4 cut(s) 34, 195, 383, 875
MalI GATC 6 cut(s) 71, 543, 588, 630, 711, 1074
MboI GATC 6 cut(s) 69, 541, 586, 628, 709, 1072
MboII GAAGA 4 cut(s) 35, 178, 1109, 1130
MhlI GDGCHC 1 cut(s) 927
MlyI GAGTC 4 cut(s) 174, 872, 1111, 1155
MmeI TCCRAC 1 cut(s) 141
MroI TCCGGA 1 cut(s) 729
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 4 cut(s) 344, 717, 843, 1080
MslI CAYNNNNRTG 1 cut(s) 1019
MspI CCGG 1 cut(s) 730
MspR9I CCNGG 2 cut(s) 423, 883
MvaI CCWGG 2 cut(s) 423, 883
MvnI CGCG 1 cut(s) 934
MwoI GCNNNNNNNGC 1 cut(s) 931
NcoI CCATGG 2 cut(s) 466, 1126
NdeII GATC 6 cut(s) 69, 541, 586, 628, 709, 1072
NlaIII CATG 5 cut(s) 470, 668, 739, 859, 1130
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 3 cut(s) 34, 195, 875
NruI TCGCGA 1 cut(s) 934
NspI RCATGY 1 cut(s) 739
NspV TTCGAA 1 cut(s) 89
PaeI GCATGC 1 cut(s) 739
PagI TCATGA 1 cut(s) 855
PaqCI CACCTGC 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 75
PflMI CCANNNNNTGG 3 cut(s) 395, 422, 953
PfoI TCCNGGA 1 cut(s) 881
PkrI GCNGC 3 cut(s) 151, 839, 1149
PleI GAGTC 4 cut(s) 174, 872, 1110, 1155
PpsI GAGTC 4 cut(s) 174, 872, 1110, 1155
PpuMI RGGWCCY 1 cut(s) 318
PshBI ATTAAT 1 cut(s) 843
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 421, 881
PspGI CCWGG 2 cut(s) 421, 881
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 318
PspPPI RGGWCCY 1 cut(s) 318
PstI CTGCAG 1 cut(s) 326
PstNI CAGNNNCTG 1 cut(s) 422
RruI TCGCGA 1 cut(s) 934
RsaI GTAC 2 cut(s) 530, 997
RsaNI GTAC 2 cut(s) 529, 996
RseI CAYNNNNRTG 1 cut(s) 1019
SaqAI TTAA 4 cut(s) 344, 717, 843, 1080
SatI GCNGC 3 cut(s) 150, 838, 1148
Sau3AI GATC 6 cut(s) 69, 541, 586, 628, 709, 1072
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 4 cut(s) 174, 872, 1111, 1155
ScrFI CCNGG 2 cut(s) 423, 883
SduI GDGCHC 1 cut(s) 927
SfaNI GCATC 1 cut(s) 794
SfcI CTRYAG 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 1019
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
SphI GCATGC 1 cut(s) 739
SsiI CCGC 3 cut(s) 5, 297, 432
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 421, 881
StyI CCWWGG 2 cut(s) 466, 1126
TaaI ACNGT 2 cut(s) 655, 995
TaiI ACGT 2 cut(s) 594, 1080
TaqI TCGA 5 cut(s) 89, 639, 753, 820, 1134
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 4 cut(s) 344, 717, 843, 1080
Tru9I TTAA 4 cut(s) 344, 717, 843, 1080
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 3 cut(s) 34, 195, 875
TseI GCWGC 3 cut(s) 149, 837, 1147
Tsp45I GTSAC 3 cut(s) 34, 195, 875
TspDTI ATGAA 4 cut(s) 94, 328, 662, 1110
TspGWI ACGGA 3 cut(s) 89, 269, 524
TspRI CASTG 1 cut(s) 331
Van91I CCANNNNNTGG 3 cut(s) 395, 422, 953
VpaK11BI GGWCC 1 cut(s) 318
VspI ATTAAT 1 cut(s) 843
XapI RAATTY 4 cut(s) 218, 274, 359, 371
XceI RCATGY 1 cut(s) 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmiI GTMKAC 2 cut(s) 1005, 1105
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.