Rmu_co8434183.1_g000001

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8434183.1
OG0011263
Physical Location & Seq
Forward (+)
1 .. 1495
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8434183.1_g000001.1.cds

Sequence Viewer

Length: 767 bp
gcatctatattggggatgacaaagtcattcatttcaccagacgtggccaagaagtaggaactgggacagtgttggatgttctcttggttagctcaggaccagtccgacctcaacagccctgcgaagtgtgcactccacgggaagagaacagtggggttctctgctcatgcttgaactgctttcttgcagggggtgtcttgtaccgttttgaatattctgtcaaccctgccctatttctggcaaaagcccggggaggaacgtgcaccctggcagtgtcggactcggatgatattgtggtccatcgagcaaaatacctgcttgaaaatggctttggttgctattgcatatttaagagcaattgtgaagacttcgctatttattgcaaaaccgggctgcttgttatggatcaaagaacattagggcaaagtggtcaagcagcatctataatagggggacctcttgcagccgttttagcaacaccactgcgtcttgtcaccaccaacgtttatgggatggtagctgtaggcattggagtatactgtgctagtaggtacggtgctgacattggcaagaggattgatgttgtgaaggtgtctgtggaggatatgacaaggagacttgcagctggctcgctccaggtggtagaggccgaaatctcagctcccttgctccaggcgcccgagtcccaaatctctgcgccccctacaagaggttcttccaaccttttcttctggtcaagaagtccttccaaccttgtcactcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

254

Amino Acids

27.17

Weight (kDa)

6.87

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06370
fragaria_vesca FvH4_6g20310 FvH4_6g20310 FvH4_6g20310
malus_domestica MD14G1039000.v1.1
prunus_persica Prupe.7G094600_v2.0.a1
pyrus_communis pycom14g03350
rosa_chinensis RchiOBHm_Chr3g0475931
rosa_laevigata RLG00000023799
rosa_multiflora Rmu_co8434183.1_g000001 Rmu_sc0000596.1_g000004 Rmu_sc0009168.1_g000002
rosa_roxburghii Rroxscaffold_6G00405720
rosa_rugosa Rorug03G0151900 Rorug03G0152000
rosa_samantha Rh3AG202900 Rh3BG232700 Rh3CG228200 Rh3DG228400
rosa_wichuraiana Rw3G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 675
AccI GTMKAC 1 cut(s) 536
AclI AACGTT 1 cut(s) 503
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 676
AfaI GTAC 2 cut(s) 202, 553
AfiI CCNNNNNNNGG 2 cut(s) 237, 709
AgsI TTSAA 3 cut(s) 174, 211, 322
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 3 cut(s) 266, 635, 671
AjuI GAANNNNNNNTTGG 4 cut(s) 314, 346, 712, 744
AluBI AGCT 4 cut(s) 92, 520, 625, 661
AluI AGCT 4 cut(s) 92, 520, 625, 661
Alw21I GWGCWC 2 cut(s) 133, 265
Alw26I GTCTC 1 cut(s) 609
Alw44I GTGCAC 2 cut(s) 129, 261
AlwI GGATC 1 cut(s) 413
Ama87I CYCGRG 2 cut(s) 248, 679
AoxI GGCC 2 cut(s) 45, 647
ApaLI GTGCAC 2 cut(s) 129, 261
ApeKI GCWGC 4 cut(s) 393, 436, 463, 622
Asp700I GAANNNNTTC 1 cut(s) 744
AspLEI GCGC 2 cut(s) 678, 699
AspS9I GGNCC 3 cut(s) 97, 297, 454
AsuC2I CCSGG 3 cut(s) 249, 250, 390
AsuHPI GGTGA 2 cut(s) 27, 486
AvaI CYCGRG 2 cut(s) 248, 679
AvaII GGWCC 3 cut(s) 97, 297, 454
BaeGI GKGCMC 2 cut(s) 133, 265
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 1 cut(s) 675
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 2 cut(s) 133, 265
BbvI GCAGC 4 cut(s) 380, 448, 475, 634
BccI CCATC 2 cut(s) 308, 507
BceAI ACGGC 1 cut(s) 451
BcgI CGANNNNNNTGC 2 cut(s) 611, 645
BciT130I CCWGG 3 cut(s) 268, 637, 673
BcnI CCSGG 3 cut(s) 249, 250, 390
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 1 cut(s) 545
BfmI CTRYAG 1 cut(s) 521
BfoI RGCGCY 1 cut(s) 679
BfuAI ACCTGC 1 cut(s) 323
BisI GCNGC 4 cut(s) 394, 437, 464, 623
BlsI GCNGC 4 cut(s) 395, 438, 465, 624
Bme1390I CCNGG 6 cut(s) 249, 250, 268, 390, 637, 673
Bme18I GGWCC 3 cut(s) 97, 297, 454
BmeT110I CYCGRG 2 cut(s) 248, 679
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 3 cut(s) 97, 297, 454
BmiI GGNNCC 2 cut(s) 455, 677
BmrFI CCNGG 6 cut(s) 249, 250, 268, 390, 637, 673
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 11, 448
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 371
BpmI CTGGAG 2 cut(s) 619, 655
Bpu10I CCTNAGC 1 cut(s) 93
BpuMI CCSGG 3 cut(s) 249, 250, 390
BsaHI GRCGYC 1 cut(s) 676
BsaJI CCNNGG 4 cut(s) 136, 248, 249, 266
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 709
Bse1I ACTGG 2 cut(s) 66, 100
BseBI CCWGG 3 cut(s) 268, 637, 673
BseDI CCNNGG 4 cut(s) 136, 248, 249, 266
BseGI GGATG 4 cut(s) 21, 81, 291, 518
BseLI CCNNNNNNNGG 2 cut(s) 237, 709
BseMII CTCAG 2 cut(s) 107, 671
BseNI ACTGG 2 cut(s) 66, 100
BseSI GKGCMC 2 cut(s) 133, 265
BseXI GCAGC 4 cut(s) 380, 448, 475, 634
BshFI GGCC 2 cut(s) 47, 649
BshNI GGYRCC 1 cut(s) 675
BsiHKAI GWGCWC 2 cut(s) 133, 265
BsiHKCI CYCGRG 2 cut(s) 248, 679
BsiSI CCGG 2 cut(s) 249, 389
BslFI GGGAC 3 cut(s) 78, 467, 669
BslI CCNNNNNNNGG 2 cut(s) 237, 709
BsmAI GTCTC 1 cut(s) 609
BsmFI GGGAC 3 cut(s) 78, 467, 669
BsnI GGCC 2 cut(s) 47, 649
BsoBI CYCGRG 2 cut(s) 248, 679
Bsp1286I GDGCHC 2 cut(s) 133, 265
Bsp143I GATC 1 cut(s) 405
BspANI GGCC 2 cut(s) 47, 649
BspCNI CTCAG 2 cut(s) 106, 670
BspLI GGNNCC 2 cut(s) 455, 677
BspMI ACCTGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 675
BsrI ACTGG 2 cut(s) 66, 100
BssECI CCNNGG 4 cut(s) 136, 248, 249, 266
BssMI GATC 1 cut(s) 405
BssNAI GTATAC 1 cut(s) 537
BssNI GRCGYC 1 cut(s) 676
Bst1107I GTATAC 1 cut(s) 537
Bst2UI CCWGG 3 cut(s) 268, 637, 673
Bst4CI ACNGT 5 cut(s) 69, 151, 205, 541, 556
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 676
BstC8I GCNNGC 2 cut(s) 627, 631
BstDEI CTNAG 3 cut(s) 93, 657, 761
BstDSI CCRYGG 1 cut(s) 136
BstENI CCTNNNNNAGG 1 cut(s) 707
BstF5I GGATG 4 cut(s) 21, 81, 291, 518
BstH2I RGCGCY 1 cut(s) 679
BstHHI GCGC 2 cut(s) 678, 699
BstKTI GATC 1 cut(s) 408
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 1 cut(s) 405
BstMWI GCNNNNNNNGC 5 cut(s) 128, 176, 335, 472, 675
BstNI CCWGG 3 cut(s) 268, 637, 673
BstSCI CCNGG 6 cut(s) 247, 248, 266, 388, 635, 671
BstSFI CTRYAG 1 cut(s) 521
BstSLI GKGCMC 2 cut(s) 133, 265
BstV1I GCAGC 4 cut(s) 380, 448, 475, 634
BstV2I GAAGAC 1 cut(s) 371
BstZ17I GTATAC 1 cut(s) 537
BsuRI GGCC 2 cut(s) 47, 649
BtgI CCRYGG 1 cut(s) 136
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 4 cut(s) 21, 81, 291, 518
BtsI GCAGTG 2 cut(s) 278, 481
BtsIMutI CAGTG 4 cut(s) 74, 156, 278, 481
BveI ACCTGC 1 cut(s) 323
Cac8I GCNNGC 2 cut(s) 627, 631
CfoI GCGC 2 cut(s) 678, 699
Cfr13I GGNCC 3 cut(s) 97, 297, 454
Cfr9I CCCGGG 1 cut(s) 248
CseI GACGC 1 cut(s) 475
Csp6I GTAC 2 cut(s) 201, 552
CviAII CATG 1 cut(s) 167
CviQI GTAC 2 cut(s) 201, 552
DdeI CTNAG 3 cut(s) 93, 657, 761
DinI GGCGCC 1 cut(s) 677
DpnI GATC 1 cut(s) 407
DpnII GATC 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco47I GGWCC 3 cut(s) 97, 297, 454
Eco88I CYCGRG 2 cut(s) 248, 679
EcoNI CCTNNNNNAGG 1 cut(s) 707
EcoO109I RGGNCCY 1 cut(s) 454
EcoRII CCWGG 3 cut(s) 266, 635, 671
EgeI GGCGCC 1 cut(s) 677
EheI GGCGCC 1 cut(s) 677
FaeI CATG 1 cut(s) 170
FaiI YATR 8 cut(s) 8, 168, 346, 403, 445, 509, 537, 607
FalI AAGNNNNNCTT 4 cut(s) 699, 731, 729, 761
FaqI GGGAC 3 cut(s) 78, 467, 669
FatI CATG 1 cut(s) 166
FblI GTMKAC 1 cut(s) 536
Fnu4HI GCNGC 4 cut(s) 394, 437, 464, 623
FokI GGATG 4 cut(s) 28, 88, 298, 525
Fsp4HI GCNGC 4 cut(s) 394, 437, 464, 623
FspBI CTAG 1 cut(s) 545
GlaI GCGC 2 cut(s) 677, 698
GluI GCNGC 4 cut(s) 394, 437, 464, 623
GsuI CTGGAG 2 cut(s) 619, 655
HaeII RGCGCY 1 cut(s) 679
HaeIII GGCC 2 cut(s) 47, 649
HapII CCGG 2 cut(s) 249, 389
HgaI GACGC 1 cut(s) 475
HhaI GCGC 2 cut(s) 678, 699
Hin1I GRCGYC 1 cut(s) 676
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 2 cut(s) 676, 697
HinP1I GCGC 2 cut(s) 676, 697
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 2 cut(s) 280, 682
HpaII CCGG 2 cut(s) 249, 389
HphI GGTGA 2 cut(s) 27, 486
Hpy166II GTNNAC 4 cut(s) 131, 222, 263, 537
Hpy188I TCNGA 3 cut(s) 106, 279, 285
Hpy188III TCNNGA 2 cut(s) 95, 737
Hpy8I GTNNAC 4 cut(s) 131, 222, 263, 537
HpyAV CCTTC 2 cut(s) 582, 755
HpyCH4III ACNGT 5 cut(s) 69, 151, 205, 541, 556
HpyCH4IV ACGT 3 cut(s) 42, 259, 503
HpyCH4V TGCA 7 cut(s) 131, 187, 263, 344, 383, 463, 622
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 176, 335, 472, 675
HpyF3I CTNAG 3 cut(s) 93, 657, 761
HpySE526I ACGT 3 cut(s) 42, 259, 503
Hsp92I GRCGYC 1 cut(s) 676
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 2 cut(s) 676, 697
KasI GGCGCC 1 cut(s) 675
Kzo9I GATC 1 cut(s) 405
LmnI GCTCC 3 cut(s) 638, 666, 674
Lsp1109I GCAGC 4 cut(s) 380, 448, 475, 634
LweI GCATC 2 cut(s) 11, 448
MaeI CTAG 1 cut(s) 545
MaeII ACGT 3 cut(s) 42, 259, 503
MaeIII GTNAC 2 cut(s) 492, 756
MalI GATC 1 cut(s) 407
MboI GATC 1 cut(s) 405
MboII GAAGA 4 cut(s) 154, 376, 707, 720
MfeI CAATTG 1 cut(s) 357
MhlI GDGCHC 2 cut(s) 133, 265
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 1 cut(s) 357
MluNI TGGCCA 1 cut(s) 47
Mly113I GGCGCC 1 cut(s) 676
MlyI GAGTC 2 cut(s) 274, 691
MmeI TCCRAC 4 cut(s) 53, 129, 257, 743
MnlI CCTC 7 cut(s) 119, 247, 467, 566, 594, 639, 703
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 744
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 350
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 625
MspI CCGG 2 cut(s) 249, 389
MspR9I CCNGG 6 cut(s) 249, 250, 268, 390, 637, 673
MunI CAATTG 1 cut(s) 357
MvaI CCWGG 3 cut(s) 268, 637, 673
MwoI GCNNNNNNNGC 5 cut(s) 128, 176, 335, 472, 675
NarI GGCGCC 1 cut(s) 676
NciI CCSGG 3 cut(s) 249, 250, 390
NdeII GATC 1 cut(s) 405
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 2 cut(s) 455, 677
NmuCI GTSAC 2 cut(s) 492, 756
PdmI GAANNNNTTC 1 cut(s) 744
PflFI GACNNNGTC 1 cut(s) 22
PkrI GCNGC 4 cut(s) 395, 438, 465, 624
PleI GAGTC 2 cut(s) 274, 690
PluTI GGCGCC 1 cut(s) 679
PpsI GAGTC 2 cut(s) 274, 690
PpuMI RGGWCCY 1 cut(s) 454
Psp1406I AACGTT 1 cut(s) 503
Psp5II RGGWCCY 1 cut(s) 454
Psp6I CCWGG 3 cut(s) 266, 635, 671
PspGI CCWGG 3 cut(s) 266, 635, 671
PspN4I GGNNCC 2 cut(s) 455, 677
PspPI GGNCC 3 cut(s) 97, 297, 454
PspPPI RGGWCCY 1 cut(s) 454
PsyI GACNNNGTC 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 625
RsaI GTAC 2 cut(s) 202, 553
RsaNI GTAC 2 cut(s) 201, 552
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 4 cut(s) 394, 437, 464, 623
Sau3AI GATC 1 cut(s) 405
Sau96I GGNCC 3 cut(s) 97, 297, 454
SchI GAGTC 2 cut(s) 274, 691
ScrFI CCNGG 6 cut(s) 249, 250, 268, 390, 637, 673
SduI GDGCHC 2 cut(s) 133, 265
SfaNI GCATC 2 cut(s) 11, 448
SfcI CTRYAG 1 cut(s) 521
SfoI GGCGCC 1 cut(s) 677
SinI GGWCC 3 cut(s) 97, 297, 454
SmaI CCCGGG 1 cut(s) 250
Sse9I AATT 1 cut(s) 357
SspDI GGCGCC 1 cut(s) 675
SspI AATATT 1 cut(s) 214
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 6 cut(s) 247, 248, 266, 388, 635, 671
TaaI ACNGT 5 cut(s) 69, 151, 205, 541, 556
TaiI ACGT 3 cut(s) 45, 262, 506
TaqI TCGA 1 cut(s) 303
TasI AATT 1 cut(s) 357
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 4 cut(s) 74, 156, 278, 488
TseFI GTSAC 2 cut(s) 492, 756
TseI GCWGC 4 cut(s) 393, 436, 463, 622
Tsp45I GTSAC 2 cut(s) 492, 756
TspDTI ATGAA 1 cut(s) 19
TspMI CCCGGG 1 cut(s) 248
TspRI CASTG 4 cut(s) 74, 156, 278, 488
Tth111I GACNNNGTC 1 cut(s) 22
VneI GTGCAC 2 cut(s) 129, 261
VpaK11BI GGWCC 3 cut(s) 97, 297, 454
XagI CCTNNNNNAGG 1 cut(s) 707
XmaI CCCGGG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 536
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.