Prupe.7G094600_v2.0.a1

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011263
Physical Location & Seq
Forward (+)
12723411 .. 12725524
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G094600.1

Sequence Viewer

Length: 795 bp
ATGGGTCTGCTCTCCAACAGAGTGGATAAGGGGAGCCTGAAGCCTGGGGATCACATCTACTCTTGGAGGACTGCCTATATCTATGCTCATCATGGCATCTATGTAGGGGATGACACAGTCGTTCATTTCACCAGGCGTGGGCAAGAAGTAGGAACAGGGACAATGCTGGATGCACTCTTGGTTAGCTCAGGGCCAGCCCGACCTCAACAGCCCTGCCAAGTTTGCACTCCACGGGAAGAGGGAAGTGGGGTTCTCTCCTCGTGCCTGAACTGCTTTCTTGCAGGGGGTGTCTTGTATCGTTTTGAATATGCTGTCAACCCTGCTCTCTTTATTGCAAAAGCACGTGGGGGAACCTGCACTCTTGCAGTCTCGGATCCAGATGATGTCGTCGTCCATCGAGCAAAATACTTGCTCGACAATGGCTTTGGTTGTTATAACGTATTTAAGAAAAATTGTGAAGACTTTGCTATTTACTGCAAAACGGGGCTTCTTGTTCTGGATCAAGGAACAATTGGCCAAAGCGGACAAGCAGTTTCTATAATAGGGGGACCTCTTGCAGCCGTTTTATCCACACCATTGCGTCTTGTTACCACCAATGTTTATGGGATGGCGGCAACAGCCATTACAATGTACTGCGCTAGCAGGTACGCTGCGGACATTGGTATGAGGAGGGATGTAGTGAAGGTGTCTGTGGAGGATATGACAAGCAAATTGGCAACTGGCTTGCTCCGGGTGGCGGAGGCCCAAATTGTATTGGCCCCTATAATAGGTTCTTCCAACCTTGTCACTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

265

Amino Acids

28.19

Weight (kDa)

8.04

Isoelectric Point (pI)

25.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06370
fragaria_vesca FvH4_6g20310 FvH4_6g20310 FvH4_6g20310
malus_domestica MD14G1039000.v1.1
prunus_persica Prupe.7G094600_v2.0.a1
pyrus_communis pycom14g03350
rosa_chinensis RchiOBHm_Chr3g0475931
rosa_laevigata RLG00000023799
rosa_multiflora Rmu_co8434183.1_g000001 Rmu_sc0000596.1_g000004 Rmu_sc0009168.1_g000002
rosa_roxburghii Rroxscaffold_6G00405720
rosa_rugosa Rorug03G0151900 Rorug03G0152000
rosa_samantha Rh3AG202900 Rh3BG232700 Rh3CG228200 Rh3DG228400
rosa_wichuraiana Rw3G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
Acc36I ACCTGC 2 cut(s) 362, 633
AciI CCGC 4 cut(s) 522, 611, 653, 737
AclWI GGATC 4 cut(s) 57, 368, 381, 507
AcoI YGGCCR 1 cut(s) 514
AcuI CTGAAG 1 cut(s) 59
AcvI CACGTG 1 cut(s) 344
AfaI GTAC 2 cut(s) 632, 647
AfiI CCNNNNNNNGG 3 cut(s) 138, 736, 767
AgsI TTSAA 1 cut(s) 305
AjnI CCWGG 2 cut(s) 43, 131
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 4 cut(s) 57, 368, 381, 507
AoxI GGCC 4 cut(s) 191, 514, 741, 756
ApeKI GCWGC 2 cut(s) 557, 650
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 1 cut(s) 638
AspS9I GGNCC 4 cut(s) 191, 548, 742, 757
AsuC2I CCSGG 1 cut(s) 731
AsuHPI GGTGA 1 cut(s) 121
AsuNHI GCTAGC 1 cut(s) 638
AvaII GGWCC 1 cut(s) 548
BalI TGGCCA 1 cut(s) 516
BamHI GGATCC 1 cut(s) 373
BauI CACGAG 1 cut(s) 259
BbrPI CACGTG 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 569, 637
BccI CCATC 2 cut(s) 402, 601
BceAI ACGGC 1 cut(s) 545
BciT130I CCWGG 2 cut(s) 45, 133
BcnI CCSGG 1 cut(s) 731
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 1 cut(s) 639
BfuAI ACCTGC 2 cut(s) 362, 633
BisI GCNGC 3 cut(s) 558, 612, 651
BlsI GCNGC 3 cut(s) 559, 613, 652
Bme1390I CCNGG 3 cut(s) 45, 133, 731
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 4 cut(s) 191, 548, 742, 757
BmiI GGNNCC 5 cut(s) 35, 352, 375, 549, 759
BmrFI CCNGG 3 cut(s) 45, 133, 731
BmsI GCATC 2 cut(s) 105, 160
BmtI GCTAGC 1 cut(s) 642
BpiI GAAGAC 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 731
BsaAI YACGTR 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 44, 230
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 736, 767
Bse1I ACTGG 1 cut(s) 724
Bse3DI GCAATG 1 cut(s) 575
BseBI CCWGG 2 cut(s) 45, 133
BseDI CCNNGG 2 cut(s) 44, 230
BseGI GGATG 4 cut(s) 115, 175, 612, 679
BseLI CCNNNNNNNGG 3 cut(s) 138, 736, 767
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 724
BseRI GAGGAG 2 cut(s) 247, 682
BseXI GCAGC 2 cut(s) 569, 637
BsgI GTGCAG 1 cut(s) 340
BshFI GGCC 4 cut(s) 193, 516, 743, 758
BsiSI CCGG 1 cut(s) 730
BslFI GGGAC 2 cut(s) 172, 561
BslI CCNNNNNNNGG 3 cut(s) 138, 736, 767
BsmAI GTCTC 1 cut(s) 373
BsmFI GGGAC 2 cut(s) 172, 561
BsnI GGCC 4 cut(s) 193, 516, 743, 758
Bsp143I GATC 3 cut(s) 49, 373, 499
BspACI CCGC 4 cut(s) 522, 611, 653, 737
BspANI GGCC 4 cut(s) 193, 516, 743, 758
BspCNI CTCAG 1 cut(s) 200
BspLI GGNNCC 5 cut(s) 35, 352, 375, 549, 759
BspMI ACCTGC 2 cut(s) 362, 633
BspOI GCTAGC 1 cut(s) 642
BspPI GGATC 4 cut(s) 57, 368, 381, 507
BsrDI GCAATG 1 cut(s) 575
BsrI ACTGG 1 cut(s) 724
BssECI CCNNGG 2 cut(s) 44, 230
BssMI GATC 3 cut(s) 49, 373, 499
BssSI CACGAG 1 cut(s) 259
Bst2BI CACGAG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 45, 133
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 344
BstC8I GCNNGC 3 cut(s) 195, 640, 725
BstDEI CTNAG 1 cut(s) 187
BstDSI CCRYGG 1 cut(s) 230
BstENI CCTNNNNNAGG 1 cut(s) 765
BstF5I GGATG 4 cut(s) 115, 175, 612, 679
BstHHI GCGC 1 cut(s) 638
BstKTI GATC 3 cut(s) 52, 376, 502
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 3 cut(s) 49, 373, 499
BstMWI GCNNNNNNNGC 3 cut(s) 222, 270, 617
BstNI CCWGG 2 cut(s) 45, 133
BstSCI CCNGG 3 cut(s) 43, 131, 729
BstV1I GCAGC 2 cut(s) 569, 637
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 373
BstXI CCANNNNNNTGG 1 cut(s) 22
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 4 cut(s) 193, 516, 743, 758
BtgI CCRYGG 1 cut(s) 230
BtsCI GGATG 4 cut(s) 115, 175, 612, 679
BveI ACCTGC 2 cut(s) 362, 633
Cac8I GCNNGC 3 cut(s) 195, 640, 725
CfoI GCGC 1 cut(s) 638
Cfr13I GGNCC 4 cut(s) 191, 548, 742, 757
CseI GACGC 1 cut(s) 569
Csp6I GTAC 2 cut(s) 631, 646
CviAII CATG 1 cut(s) 92
CviQI GTAC 2 cut(s) 631, 646
DdeI CTNAG 1 cut(s) 187
DpnI GATC 3 cut(s) 51, 375, 501
DpnII GATC 3 cut(s) 49, 373, 499
EaeI YGGCCR 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
EciI GGCGGA 1 cut(s) 752
Eco47I GGWCC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 59
Eco72I CACGTG 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 765
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 2 cut(s) 43, 131
FaeI CATG 1 cut(s) 95
FaqI GGGAC 2 cut(s) 172, 561
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 3 cut(s) 558, 612, 651
FokI GGATG 4 cut(s) 122, 182, 619, 686
Fsp4HI GCNGC 3 cut(s) 558, 612, 651
FspBI CTAG 1 cut(s) 639
GlaI GCGC 1 cut(s) 637
GluI GCNGC 3 cut(s) 558, 612, 651
HaeIII GGCC 4 cut(s) 193, 516, 743, 758
HapII CCGG 1 cut(s) 730
HgaI GACGC 1 cut(s) 569
HhaI GCGC 1 cut(s) 638
Hin1II CATG 1 cut(s) 95
Hin6I GCGC 1 cut(s) 636
HinP1I GCGC 1 cut(s) 636
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HpaII CCGG 1 cut(s) 730
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 2 cut(s) 377, 497
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 1 cut(s) 676
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 343, 438
HpyCH4V TGCA 8 cut(s) 173, 225, 281, 335, 357, 365, 477, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 222, 270, 617
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 2 cut(s) 343, 438
Hsp92II CATG 1 cut(s) 95
HspAI GCGC 1 cut(s) 636
Kzo9I GATC 3 cut(s) 49, 373, 499
LmnI GCTCC 2 cut(s) 33, 732
Lsp1109I GCAGC 2 cut(s) 569, 637
LweI GCATC 2 cut(s) 105, 160
MaeI CTAG 1 cut(s) 639
MaeII ACGT 2 cut(s) 343, 438
MaeIII GTNAC 2 cut(s) 586, 784
MalI GATC 3 cut(s) 51, 375, 501
MboI GATC 3 cut(s) 49, 373, 499
MboII GAAGA 3 cut(s) 248, 470, 765
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 1 cut(s) 373
MlsI TGGCCA 1 cut(s) 516
MluCI AATT 4 cut(s) 451, 510, 710, 747
MluNI TGGCCA 1 cut(s) 516
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 9 cut(s) 60, 213, 232, 268, 561, 660, 663, 688, 733
Mox20I TGGCCA 1 cut(s) 516
MscI TGGCCA 1 cut(s) 516
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 2 cut(s) 626, 662
Msp20I TGGCCA 1 cut(s) 516
MspI CCGG 1 cut(s) 730
MspR9I CCNGG 3 cut(s) 45, 133, 731
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 2 cut(s) 45, 133
MwoI GCNNNNNNNGC 3 cut(s) 222, 270, 617
NciI CCSGG 1 cut(s) 731
NdeII GATC 3 cut(s) 49, 373, 499
NheI GCTAGC 1 cut(s) 638
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 5 cut(s) 35, 352, 375, 549, 759
NmuCI GTSAC 1 cut(s) 784
PflFI GACNNNGTC 1 cut(s) 116
PkrI GCNGC 3 cut(s) 559, 613, 652
PmaCI CACGTG 1 cut(s) 344
PmlI CACGTG 1 cut(s) 344
Ppu21I YACGTR 1 cut(s) 344
PpuMI RGGWCCY 1 cut(s) 548
PsiI TTATAA 1 cut(s) 435
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 2 cut(s) 43, 131
PspCI CACGTG 1 cut(s) 344
PspGI CCWGG 2 cut(s) 43, 131
PspN4I GGNNCC 5 cut(s) 35, 352, 375, 549, 759
PspPI GGNCC 4 cut(s) 191, 548, 742, 757
PspPPI RGGWCCY 1 cut(s) 548
PsuI RGATCY 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 2 cut(s) 632, 647
RsaNI GTAC 2 cut(s) 631, 646
RseI CAYNNNNRTG 2 cut(s) 626, 662
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 3 cut(s) 558, 612, 651
Sau3AI GATC 3 cut(s) 49, 373, 499
Sau96I GGNCC 4 cut(s) 191, 548, 742, 757
ScrFI CCNGG 3 cut(s) 45, 133, 731
SfaNI GCATC 2 cut(s) 105, 160
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 2 cut(s) 626, 662
Sse9I AATT 4 cut(s) 451, 510, 710, 747
SsiI CCGC 4 cut(s) 522, 611, 653, 737
SspMI CTAG 1 cut(s) 639
StyD4I CCNGG 3 cut(s) 43, 131, 729
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 2 cut(s) 346, 441
TaqI TCGA 2 cut(s) 397, 414
TasI AATT 4 cut(s) 451, 510, 710, 747
TatI WGTACW 1 cut(s) 630
TauI GCSGC 1 cut(s) 614
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TseFI GTSAC 1 cut(s) 784
TseI GCWGC 2 cut(s) 557, 650
Tsp45I GTSAC 1 cut(s) 784
TspDTI ATGAA 1 cut(s) 113
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 548
XagI CCTNNNNNAGG 1 cut(s) 765
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.