FvH4_6g20310

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011263
Physical Location & Seq
Reverse (-)
13893883 .. 13898106
4224 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20310.t1

Sequence Viewer

Length: 1011 bp
ATGCTGCAACAGGTGTCCCAATCTTTCCTTAACGAGAATCAAATTCCCTTTCCCAAACCAATCAAAGTTTCATATCATCTTGCTTTTCTGGGAAAGGAGAACAACACCATTATGGGGCTGCTCTCCAACAGGGTGGCTAAGGGAAGCCTCAAGCCAGGGGATCACATCTACTCTTGGAGGACTGCCTATATCTATGCCCATCATGGCATCTATATCGGGGATGACAAGGTCATACATTTCACCAGACGTGGCCAAGAAGTTGGAACTGGGACAGTGCTGGATCTTCTCTTGGTTAGCTCAGGACCAACCGGACCTCAGCAGCCCTGCGAAGTCTGCACTCCACGGGACGAGAACAGTGGTGTTCTTTGCTCATGCTTGAACTGCTTTCTTGCAGGGGGTGTCTTGTATCGTTTTGAATATTCTGTCAACCCTGCCTTATTCCTGGCAAAAGCTCGAGGAGGAACATGCACTCTTGCAGTATCGGACCCAGATGATACTGTGGTTCATCGAGCAAAATACCTGCTCGAATATGGCTTTGGTTGCTATTGCATATTTAAGAACAATTGTGAAGACTTCGCTATTTATTGCAAAACTGGGCTACTTGTTATGGATCAAAGAACATTAGGACAAAGTGGTCAAGCAGCATCTATAATAGGGGGACCTCTTGCAGCTGTGTTAGCAACACCGTTGCGTCTCGTGACCACCAACCTTTATGGGATGGCAGCAGTAGGCATTGGAGTATATTGCGCTAGTAGGTACAGTGCTGACATTGGCAAGAGGATGGATGTAGTGAAGGTATCTGTGGAGGATTTGACAAGGAGACTTGCAGCTGGCTCGCTTCAAGTCGTGGAGGCCCAAATATCAGCTCCATTGCTCCAAGCTCCTGAATCCCAAGTCTCAGCTCCCTTGCTACTGCAGGCACCCGTGTCCCAACTCTCTGCTCCCCCTACAAGAAGTCCTTCAAACCTATTCTTCTGGTCAAGAAGTTCTTCCAACCTTGTCACTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

337

Amino Acids

36.36

Weight (kDa)

8.59

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 50 - 201 1.9e-27 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06370
fragaria_vesca FvH4_6g20310 FvH4_6g20310 FvH4_6g20310
malus_domestica MD14G1039000.v1.1
prunus_persica Prupe.7G094600_v2.0.a1
pyrus_communis pycom14g03350
rosa_chinensis RchiOBHm_Chr3g0475931
rosa_laevigata RLG00000023799
rosa_multiflora Rmu_co8434183.1_g000001 Rmu_sc0000596.1_g000004 Rmu_sc0009168.1_g000002
rosa_roxburghii Rroxscaffold_6G00405720
rosa_rugosa Rorug03G0151900 Rorug03G0152000
rosa_samantha Rh3AG202900 Rh3BG232700 Rh3CG228200 Rh3DG228400
rosa_wichuraiana Rw3G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 633
Acc36I ACCTGC 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 919
AclWI GGATC 3 cut(s) 168, 288, 618
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 42
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 4 cut(s) 379, 416, 842, 963
AjiI CACGTC 1 cut(s) 248
AjnI CCWGG 2 cut(s) 154, 441
AjuI GAANNNNNNNTTGG 4 cut(s) 52, 84, 519, 551
AluBI AGCT 7 cut(s) 297, 452, 671, 830, 866, 881, 902
AluI AGCT 7 cut(s) 297, 452, 671, 830, 866, 881, 902
Alw26I GTCTC 3 cut(s) 698, 814, 901
AlwI GGATC 3 cut(s) 168, 288, 618
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 2 cut(s) 250, 852
ApeKI GCWGC 7 cut(s) 4, 118, 319, 641, 668, 722, 827
ApoI RAATTY 1 cut(s) 42
Asp700I GAANNNNTTC 2 cut(s) 958, 988
AspLEI GCGC 1 cut(s) 749
AspS9I GGNCC 5 cut(s) 302, 311, 484, 659, 853
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 453
AvaII GGWCC 4 cut(s) 302, 311, 484, 659
BaeI ACNNNNGTAYC 2 cut(s) 486, 519
BalI TGGCCA 1 cut(s) 252
BanI GGYRCC 1 cut(s) 919
BauI CACGAG 1 cut(s) 695
BbsI GAAGAC 1 cut(s) 576
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 6 cut(s) 105, 331, 653, 680, 734, 839
BccI CCATC 3 cut(s) 207, 712, 775
BcgI CGANNNNNNTGC 4 cut(s) 196, 230, 816, 850
BciT130I CCWGG 2 cut(s) 156, 443
BcoDI GTCTC 3 cut(s) 698, 814, 901
BfaI CTAG 1 cut(s) 750
BfmI CTRYAG 1 cut(s) 914
BfuAI ACCTGC 1 cut(s) 528
BisI GCNGC 7 cut(s) 5, 119, 320, 642, 669, 723, 828
BlsI GCNGC 7 cut(s) 6, 120, 321, 643, 670, 724, 829
Bme1390I CCNGG 2 cut(s) 156, 443
Bme18I GGWCC 4 cut(s) 302, 311, 484, 659
BmeT110I CYCGRG 1 cut(s) 453
BmgBI CACGTC 1 cut(s) 248
BmgT120I GGNCC 5 cut(s) 302, 311, 484, 659, 853
BmiI GGNNCC 3 cut(s) 486, 660, 921
BmrFI CCNGG 2 cut(s) 156, 443
BmrI ACTGGG 2 cut(s) 276, 603
BmsI GCATC 2 cut(s) 216, 653
BmuI ACTGGG 2 cut(s) 276, 603
BpiI GAAGAC 1 cut(s) 576
Bpu10I CCTNAGC 3 cut(s) 138, 298, 315
BpuEI CTTGAG 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 155, 341
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 271, 598
Bse3DI GCAATG 1 cut(s) 869
BseBI CCWGG 2 cut(s) 156, 443
BseDI CCNNGG 2 cut(s) 155, 341
BseGI GGATG 4 cut(s) 226, 723, 786, 790
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 869
BseMII CTCAG 3 cut(s) 312, 329, 912
BseNI ACTGG 2 cut(s) 271, 598
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 6 cut(s) 105, 331, 653, 680, 734, 839
BsgI GTGCAG 1 cut(s) 319
BshFI GGCC 2 cut(s) 252, 854
BshNI GGYRCC 1 cut(s) 919
BsiHKCI CYCGRG 1 cut(s) 453
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 4 cut(s) 283, 359, 672, 913
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 3 cut(s) 698, 814, 901
BsmBI CGTCTC 1 cut(s) 698
BsmFI GGGAC 4 cut(s) 283, 359, 672, 913
BsnI GGCC 2 cut(s) 252, 854
BsoBI CYCGRG 1 cut(s) 453
Bsp143I GATC 3 cut(s) 160, 280, 610
BspANI GGCC 2 cut(s) 252, 854
BspCNI CTCAG 3 cut(s) 311, 328, 911
BspLI GGNNCC 3 cut(s) 486, 660, 921
BspMAI CTGCAG 1 cut(s) 918
BspMI ACCTGC 1 cut(s) 528
BspPI GGATC 3 cut(s) 168, 288, 618
BspT107I GGYRCC 1 cut(s) 919
BsrDI GCAATG 1 cut(s) 869
BsrI ACTGG 2 cut(s) 271, 598
BssECI CCNNGG 2 cut(s) 155, 341
BssMI GATC 3 cut(s) 160, 280, 610
BssSI CACGAG 1 cut(s) 695
Bst2BI CACGAG 1 cut(s) 695
Bst2UI CCWGG 2 cut(s) 156, 443
Bst4CI ACNGT 5 cut(s) 274, 356, 499, 687, 761
BstC8I GCNNGC 3 cut(s) 832, 836, 918
BstDEI CTNAG 4 cut(s) 138, 298, 315, 898
BstDSI CCRYGG 1 cut(s) 341
BstF5I GGATG 4 cut(s) 226, 723, 786, 790
BstHHI GCGC 1 cut(s) 749
BstKTI GATC 3 cut(s) 163, 283, 613
BstMAI GTCTC 3 cut(s) 698, 814, 901
BstMBI GATC 3 cut(s) 160, 280, 610
BstMWI GCNNNNNNNGC 4 cut(s) 333, 381, 540, 677
BstNI CCWGG 2 cut(s) 156, 443
BstNSI RCATGY 1 cut(s) 468
BstSCI CCNGG 2 cut(s) 154, 441
BstSFI CTRYAG 1 cut(s) 914
BstV1I GCAGC 6 cut(s) 105, 331, 653, 680, 734, 839
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 1 cut(s) 280
BstXI CCANNNNNNTGG 2 cut(s) 133, 260
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 2 cut(s) 252, 854
BtgI CCRYGG 1 cut(s) 341
BtrI CACGTC 1 cut(s) 248
BtsCI GGATG 4 cut(s) 226, 723, 786, 790
BtsIMutI CAGTG 3 cut(s) 279, 361, 766
BveI ACCTGC 1 cut(s) 528
Cac8I GCNNGC 3 cut(s) 832, 836, 918
CfoI GCGC 1 cut(s) 749
Cfr13I GGNCC 5 cut(s) 302, 311, 484, 659, 853
CseI GACGC 1 cut(s) 680
Csp6I GTAC 1 cut(s) 757
CviAII CATG 3 cut(s) 203, 372, 465
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 4 cut(s) 138, 298, 315, 898
DpnI GATC 3 cut(s) 162, 282, 612
DpnII GATC 3 cut(s) 160, 280, 610
DrdI GACNNNNNNGTC 1 cut(s) 633
DseDI GACNNNNNNGTC 1 cut(s) 633
EaeI YGGCCR 1 cut(s) 250
Eco47I GGWCC 4 cut(s) 302, 311, 484, 659
Eco88I CYCGRG 1 cut(s) 453
EcoO109I RGGNCCY 1 cut(s) 659
EcoRII CCWGG 2 cut(s) 154, 441
Esp3I CGTCTC 1 cut(s) 698
FaeI CATG 3 cut(s) 206, 375, 468
FalI AAGNNNNNCTT 4 cut(s) 943, 975, 973, 1005
FaqI GGGAC 4 cut(s) 283, 359, 672, 913
FatI CATG 3 cut(s) 202, 371, 464
Fnu4HI GCNGC 7 cut(s) 5, 119, 320, 642, 669, 723, 828
FokI GGATG 4 cut(s) 233, 730, 793, 797
Fsp4HI GCNGC 7 cut(s) 5, 119, 320, 642, 669, 723, 828
FspBI CTAG 1 cut(s) 750
GlaI GCGC 1 cut(s) 748
GluI GCNGC 7 cut(s) 5, 119, 320, 642, 669, 723, 828
HaeIII GGCC 2 cut(s) 252, 854
HapII CCGG 1 cut(s) 309
HgaI GACGC 1 cut(s) 680
HhaI GCGC 1 cut(s) 749
Hin1II CATG 3 cut(s) 206, 375, 468
Hin6I GCGC 1 cut(s) 747
HinP1I GCGC 1 cut(s) 747
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 2 cut(s) 37, 887
HpaII CCGG 1 cut(s) 309
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 4 cut(s) 300, 697, 884, 981
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 2 cut(s) 787, 969
HpyCH4III ACNGT 5 cut(s) 274, 356, 499, 687, 761
HpyCH4IV ACGT 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 4 cut(s) 333, 381, 540, 677
HpyF3I CTNAG 4 cut(s) 138, 298, 315, 898
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 3 cut(s) 206, 375, 468
HspAI GCGC 1 cut(s) 747
Kzo9I GATC 3 cut(s) 160, 280, 610
LmnI GCTCC 5 cut(s) 871, 879, 886, 907, 946
Lsp1109I GCAGC 6 cut(s) 105, 331, 653, 680, 734, 839
LweI GCATC 2 cut(s) 216, 653
MaeI CTAG 1 cut(s) 750
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 697, 1000
MalI GATC 3 cut(s) 162, 282, 612
MboI GATC 3 cut(s) 160, 280, 610
MboII GAAGA 4 cut(s) 275, 581, 964, 981
MfeI CAATTG 1 cut(s) 562
MflI RGATCY 1 cut(s) 280
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 2 cut(s) 42, 562
MluNI TGGCCA 1 cut(s) 252
MmeI TCCRAC 2 cut(s) 150, 241
MnlI CCTC 9 cut(s) 158, 171, 324, 449, 452, 672, 771, 799, 844
Mox20I TGGCCA 1 cut(s) 252
MroXI GAANNNNTTC 2 cut(s) 958, 988
MscI TGGCCA 1 cut(s) 252
MseI TTAA 2 cut(s) 30, 555
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 252
MspA1I CMGCKG 2 cut(s) 671, 830
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 2 cut(s) 156, 443
MunI CAATTG 1 cut(s) 562
MvaI CCWGG 2 cut(s) 156, 443
MwoI GCNNNNNNNGC 4 cut(s) 333, 381, 540, 677
NdeII GATC 3 cut(s) 160, 280, 610
NlaIII CATG 3 cut(s) 206, 375, 468
NlaIV GGNNCC 3 cut(s) 486, 660, 921
NmuCI GTSAC 2 cut(s) 697, 1000
NspI RCATGY 1 cut(s) 468
PaeR7I CTCGAG 1 cut(s) 453
PdmI GAANNNNTTC 2 cut(s) 958, 988
PfeI GAWTC 2 cut(s) 37, 887
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 7 cut(s) 6, 120, 321, 643, 670, 724, 829
PpuMI RGGWCCY 1 cut(s) 659
Psp5II RGGWCCY 1 cut(s) 659
Psp6I CCWGG 2 cut(s) 154, 441
PspGI CCWGG 2 cut(s) 154, 441
PspN4I GGNNCC 3 cut(s) 486, 660, 921
PspPI GGNCC 5 cut(s) 302, 311, 484, 659, 853
PspPPI RGGWCCY 1 cut(s) 659
PspXI VCTCGAGB 1 cut(s) 453
PstI CTGCAG 1 cut(s) 918
PsuI RGATCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 227
PvuII CAGCTG 2 cut(s) 671, 830
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 2 cut(s) 30, 555
SatI GCNGC 7 cut(s) 5, 119, 320, 642, 669, 723, 828
Sau3AI GATC 3 cut(s) 160, 280, 610
Sau96I GGNCC 5 cut(s) 302, 311, 484, 659, 853
ScrFI CCNGG 2 cut(s) 156, 443
SfaNI GCATC 2 cut(s) 216, 653
SfcI CTRYAG 1 cut(s) 914
Sfr274I CTCGAG 1 cut(s) 453
SinI GGWCC 4 cut(s) 302, 311, 484, 659
SlaI CTCGAG 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 149, 453
SmoI CTYRAG 2 cut(s) 149, 453
Sse9I AATT 2 cut(s) 42, 562
SspI AATATT 1 cut(s) 419
SspMI CTAG 1 cut(s) 750
StyD4I CCNGG 2 cut(s) 154, 441
TaaI ACNGT 5 cut(s) 274, 356, 499, 687, 761
TaiI ACGT 1 cut(s) 250
TaqI TCGA 3 cut(s) 454, 508, 525
TasI AATT 2 cut(s) 42, 562
TfiI GAWTC 2 cut(s) 37, 887
Tru1I TTAA 2 cut(s) 30, 555
Tru9I TTAA 2 cut(s) 30, 555
TscAI CASTG 3 cut(s) 279, 361, 766
TseFI GTSAC 2 cut(s) 697, 1000
TseI GCWGC 7 cut(s) 4, 118, 319, 641, 668, 722, 827
Tsp45I GTSAC 2 cut(s) 697, 1000
TspDTI ATGAA 2 cut(s) 60, 494
TspRI CASTG 3 cut(s) 279, 361, 766
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 4 cut(s) 302, 311, 484, 659
XapI RAATTY 1 cut(s) 42
XceI RCATGY 1 cut(s) 468
XhoI CTCGAG 1 cut(s) 453
XmnI GAANNNNTTC 2 cut(s) 958, 988
XspI CTAG 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.