Rh3BG232700

Lecithin retinol acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011263
Physical Location & Seq
Reverse (-)
21594725 .. 21598749
4025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG232700.1

Sequence Viewer

Length: 897 bp
ATGGGGCTGCTCTCCAACAGAGTGGCTAAGGGAAGCCTCAAACCAGGGGATCACATCTACTCTTGGAGGACTGCTTACATCTATGCCCATCATGGCATCTATATTGGGGATGACAAAGTCATTCATTTCACCAGACGTGGCCAAGAAGTAGGAACTGGGACAGTGTTGGATGTTCTTTTGGTTAGCTCAGGACCAGTCCAACCTCAACAGCCCTGCGAAGTGTGCACTCCACGGGAAGAGAACAGTGGGGTTCTCTGCTCGTGCTTGAACTGCTTTCTTGCAGGGGGTGTCTTGTACCGTTTTGAATATTCTGTCAACCCTGCCCTATTTCTGGCAAAAGCCCGGGGAGGAACGTGCACCCTTGCAGTGTCGGACTCAGATGATATTGTGGTCCATCGAGCAAAATACCTGCTTGAAAATGGCTTTGGTTGCTATTGCATATTTAAGAGCAATTGTGAAGACTTCGCTATTTATTGCAAAACTGGGCTGCTTGTTATGGATCAAAGAACATTAGGGCAAAGTGGTCAAGCAGCATCTATAATAGGGGGACCTCTTGCAGCCGTTTTAGCAACACCGCTGCGTCTTGTCACCACCAACATTTATGGGATGGTAGCTGTAGGCATTGGAGTATACTGTGCTAGTAGGTACGGTGCTGACATTGGCAAGAGGATTGATGTTGTGAAGGTGTCTGTGGAGGATTTGACAAGGAGACTTGCAGCTGGCTCGCTCCAGGTGGTGGAGGCCGAAATCTCAGCTCCCTTGCTCCACGCATCCGAGTCCCAAATCTCAGCTCCCTTGCTCCAGGCGCCCGAGTCCCAAATCTCTGCGCCCCCTACAAGAGGTTCTTCCAACCTTTTCTTCTGGTCAAGAAGTCCTTCCAACCTTGTCACTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRAT

Protein Analysis

298

Amino Acids

31.98

Weight (kDa)

7.98

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRAT PF04970 13 - 164 6.8e-27 Lecithin retinol acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06370
fragaria_vesca FvH4_6g20310 FvH4_6g20310 FvH4_6g20310
malus_domestica MD14G1039000.v1.1
prunus_persica Prupe.7G094600_v2.0.a1
pyrus_communis pycom14g03350
rosa_chinensis RchiOBHm_Chr3g0475931
rosa_laevigata RLG00000023799
rosa_multiflora Rmu_co8434183.1_g000001 Rmu_sc0000596.1_g000004 Rmu_sc0009168.1_g000002
rosa_roxburghii Rroxscaffold_6G00405720
rosa_rugosa Rorug03G0151900 Rorug03G0152000
rosa_samantha Rh3AG202900 Rh3BG232700 Rh3CG228200 Rh3DG228400
rosa_wichuraiana Rw3G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 805
AccB7I CCANNNNNTGG 1 cut(s) 736
AccI GTMKAC 1 cut(s) 630
AciI CCGC 1 cut(s) 575
AclWI GGATC 2 cut(s) 57, 507
AcoI YGGCCR 1 cut(s) 139
AcyI GRCGYC 1 cut(s) 806
AfaI GTAC 2 cut(s) 296, 647
AfiI CCNNNNNNNGG 3 cut(s) 331, 736, 839
AgsI TTSAA 3 cut(s) 268, 305, 416
AjiI CACGTC 1 cut(s) 137
AjnI CCWGG 3 cut(s) 43, 729, 801
AjuI GAANNNNNNNTTGG 4 cut(s) 408, 440, 842, 874
AluBI AGCT 5 cut(s) 186, 614, 719, 755, 791
AluI AGCT 5 cut(s) 186, 614, 719, 755, 791
Alw21I GWGCWC 2 cut(s) 227, 359
Alw26I GTCTC 1 cut(s) 703
Alw44I GTGCAC 2 cut(s) 223, 355
AlwI GGATC 2 cut(s) 57, 507
Ama87I CYCGRG 2 cut(s) 342, 809
AoxI GGCC 2 cut(s) 139, 741
ApaLI GTGCAC 2 cut(s) 223, 355
ApeKI GCWGC 6 cut(s) 7, 487, 530, 557, 577, 716
Asp700I GAANNNNTTC 1 cut(s) 874
AspLEI GCGC 2 cut(s) 808, 829
AspS9I GGNCC 3 cut(s) 191, 391, 548
AsuC2I CCSGG 2 cut(s) 343, 344
AsuHPI GGTGA 2 cut(s) 121, 580
AvaI CYCGRG 2 cut(s) 342, 809
AvaII GGWCC 3 cut(s) 191, 391, 548
BaeGI GKGCMC 2 cut(s) 227, 359
BalI TGGCCA 1 cut(s) 141
BanI GGYRCC 1 cut(s) 805
BauI CACGAG 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 227, 359
BbvI GCAGC 5 cut(s) 474, 542, 564, 569, 728
BccI CCATC 3 cut(s) 96, 402, 601
BceAI ACGGC 1 cut(s) 545
BcgI CGANNNNNNTGC 2 cut(s) 705, 739
BciT130I CCWGG 3 cut(s) 45, 731, 803
BcnI CCSGG 2 cut(s) 343, 344
BcoDI GTCTC 1 cut(s) 703
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 1 cut(s) 809
BfuAI ACCTGC 1 cut(s) 417
BisI GCNGC 6 cut(s) 8, 488, 531, 558, 578, 717
BlsI GCNGC 6 cut(s) 9, 489, 532, 559, 579, 718
Bme1390I CCNGG 5 cut(s) 45, 343, 344, 731, 803
Bme18I GGWCC 3 cut(s) 191, 391, 548
BmeT110I CYCGRG 2 cut(s) 342, 809
BmgBI CACGTC 1 cut(s) 137
BmgT120I GGNCC 3 cut(s) 191, 391, 548
BmiI GGNNCC 2 cut(s) 549, 807
BmrFI CCNGG 5 cut(s) 45, 343, 344, 731, 803
BmrI ACTGGG 2 cut(s) 165, 492
BmsI GCATC 3 cut(s) 105, 542, 779
BmuI ACTGGG 2 cut(s) 165, 492
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 2 cut(s) 713, 785
Bpu10I CCTNAGC 2 cut(s) 27, 187
BpuMI CCSGG 2 cut(s) 343, 344
BsaHI GRCGYC 1 cut(s) 806
BsaJI CCNNGG 4 cut(s) 44, 230, 342, 343
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 736, 839
Bse1I ACTGG 3 cut(s) 160, 194, 487
BseBI CCWGG 3 cut(s) 45, 731, 803
BseDI CCNNGG 4 cut(s) 44, 230, 342, 343
BseGI GGATG 4 cut(s) 115, 175, 612, 770
BseLI CCNNNNNNNGG 3 cut(s) 331, 736, 839
BseMII CTCAG 4 cut(s) 201, 390, 765, 801
BseNI ACTGG 3 cut(s) 160, 194, 487
BseSI GKGCMC 2 cut(s) 227, 359
BseXI GCAGC 5 cut(s) 474, 542, 564, 569, 728
BshFI GGCC 2 cut(s) 141, 743
BshNI GGYRCC 1 cut(s) 805
BsiHKAI GWGCWC 2 cut(s) 227, 359
BsiHKCI CYCGRG 2 cut(s) 342, 809
BsiSI CCGG 1 cut(s) 343
BslFI GGGAC 4 cut(s) 172, 561, 763, 799
BslI CCNNNNNNNGG 3 cut(s) 331, 736, 839
BsmAI GTCTC 1 cut(s) 703
BsmFI GGGAC 4 cut(s) 172, 561, 763, 799
BsnI GGCC 2 cut(s) 141, 743
BsoBI CYCGRG 2 cut(s) 342, 809
Bsp1286I GDGCHC 2 cut(s) 227, 359
Bsp143I GATC 2 cut(s) 49, 499
BspACI CCGC 1 cut(s) 575
BspANI GGCC 2 cut(s) 141, 743
BspCNI CTCAG 4 cut(s) 200, 389, 764, 800
BspLI GGNNCC 2 cut(s) 549, 807
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 57, 507
BspT107I GGYRCC 1 cut(s) 805
BsrI ACTGG 3 cut(s) 160, 194, 487
BssECI CCNNGG 4 cut(s) 44, 230, 342, 343
BssMI GATC 2 cut(s) 49, 499
BssNAI GTATAC 1 cut(s) 631
BssNI GRCGYC 1 cut(s) 806
BssSI CACGAG 1 cut(s) 259
Bst1107I GTATAC 1 cut(s) 631
Bst2BI CACGAG 1 cut(s) 259
Bst2UI CCWGG 3 cut(s) 45, 731, 803
Bst4CI ACNGT 5 cut(s) 163, 245, 299, 635, 650
Bst6I CTCTTC 1 cut(s) 231
BstACI GRCGYC 1 cut(s) 806
BstC8I GCNNGC 2 cut(s) 721, 725
BstDEI CTNAG 5 cut(s) 27, 187, 376, 751, 787
BstDSI CCRYGG 1 cut(s) 230
BstENI CCTNNNNNAGG 1 cut(s) 837
BstF5I GGATG 4 cut(s) 115, 175, 612, 770
BstH2I RGCGCY 1 cut(s) 809
BstHHI GCGC 2 cut(s) 808, 829
BstKTI GATC 2 cut(s) 52, 502
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 2 cut(s) 49, 499
BstMWI GCNNNNNNNGC 5 cut(s) 222, 270, 429, 566, 805
BstNI CCWGG 3 cut(s) 45, 731, 803
BstSCI CCNGG 5 cut(s) 43, 341, 342, 729, 801
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 2 cut(s) 227, 359
BstV1I GCAGC 5 cut(s) 474, 542, 564, 569, 728
BstV2I GAAGAC 1 cut(s) 465
BstXI CCANNNNNNTGG 1 cut(s) 22
BstZ17I GTATAC 1 cut(s) 631
BsuRI GGCC 2 cut(s) 141, 743
BtgI CCRYGG 1 cut(s) 230
BtrI CACGTC 1 cut(s) 137
BtsCI GGATG 4 cut(s) 115, 175, 612, 770
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 3 cut(s) 168, 250, 372
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 721, 725
CfoI GCGC 2 cut(s) 808, 829
Cfr13I GGNCC 3 cut(s) 191, 391, 548
Cfr9I CCCGGG 1 cut(s) 342
CseI GACGC 1 cut(s) 569
Csp6I GTAC 2 cut(s) 295, 646
CviAII CATG 1 cut(s) 92
CviQI GTAC 2 cut(s) 295, 646
DdeI CTNAG 5 cut(s) 27, 187, 376, 751, 787
DinI GGCGCC 1 cut(s) 807
DpnI GATC 2 cut(s) 51, 501
DpnII GATC 2 cut(s) 49, 499
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco47I GGWCC 3 cut(s) 191, 391, 548
Eco88I CYCGRG 2 cut(s) 342, 809
EcoNI CCTNNNNNAGG 1 cut(s) 837
EcoO109I RGGNCCY 1 cut(s) 548
EcoRII CCWGG 3 cut(s) 43, 729, 801
EgeI GGCGCC 1 cut(s) 807
EheI GGCGCC 1 cut(s) 807
FaeI CATG 1 cut(s) 95
FaiI YATR 8 cut(s) 84, 93, 102, 440, 497, 539, 603, 631
FalI AAGNNNNNCTT 4 cut(s) 829, 861, 859, 891
FaqI GGGAC 4 cut(s) 172, 561, 763, 799
FatI CATG 1 cut(s) 91
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 6 cut(s) 8, 488, 531, 558, 578, 717
FokI GGATG 4 cut(s) 122, 182, 619, 757
Fsp4HI GCNGC 6 cut(s) 8, 488, 531, 558, 578, 717
FspBI CTAG 1 cut(s) 639
GlaI GCGC 2 cut(s) 807, 828
GluI GCNGC 6 cut(s) 8, 488, 531, 558, 578, 717
GsuI CTGGAG 2 cut(s) 713, 785
HaeII RGCGCY 1 cut(s) 809
HaeIII GGCC 2 cut(s) 141, 743
HapII CCGG 1 cut(s) 343
HgaI GACGC 1 cut(s) 569
HhaI GCGC 2 cut(s) 808, 829
Hin1I GRCGYC 1 cut(s) 806
Hin1II CATG 1 cut(s) 95
Hin6I GCGC 2 cut(s) 806, 827
HinP1I GCGC 2 cut(s) 806, 827
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 3 cut(s) 374, 776, 812
HpaII CCGG 1 cut(s) 343
HphI GGTGA 2 cut(s) 121, 580
Hpy166II GTNNAC 4 cut(s) 225, 316, 357, 631
Hpy188I TCNGA 3 cut(s) 373, 379, 775
Hpy188III TCNNGA 2 cut(s) 189, 867
Hpy8I GTNNAC 4 cut(s) 225, 316, 357, 631
HpyAV CCTTC 2 cut(s) 676, 885
HpyCH4III ACNGT 5 cut(s) 163, 245, 299, 635, 650
HpyCH4IV ACGT 2 cut(s) 136, 353
HpyCH4V TGCA 8 cut(s) 225, 281, 357, 365, 438, 477, 557, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 270, 429, 566, 805
HpyF3I CTNAG 5 cut(s) 27, 187, 376, 751, 787
HpySE526I ACGT 2 cut(s) 136, 353
Hsp92I GRCGYC 1 cut(s) 806
Hsp92II CATG 1 cut(s) 95
HspAI GCGC 2 cut(s) 806, 827
KasI GGCGCC 1 cut(s) 805
Kzo9I GATC 2 cut(s) 49, 499
LmnI GCTCC 5 cut(s) 732, 760, 768, 796, 804
Lsp1109I GCAGC 5 cut(s) 474, 542, 564, 569, 728
LweI GCATC 3 cut(s) 105, 542, 779
MaeI CTAG 1 cut(s) 639
MaeII ACGT 2 cut(s) 136, 353
MaeIII GTNAC 2 cut(s) 586, 886
MalI GATC 2 cut(s) 51, 501
MboI GATC 2 cut(s) 49, 499
MboII GAAGA 4 cut(s) 248, 470, 837, 850
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 227, 359
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 1 cut(s) 451
MluNI TGGCCA 1 cut(s) 141
Mly113I GGCGCC 1 cut(s) 806
MlyI GAGTC 3 cut(s) 368, 785, 821
MmeI TCCRAC 5 cut(s) 39, 147, 223, 351, 873
MnlI CCTC 9 cut(s) 47, 60, 213, 341, 561, 660, 688, 733, 833
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 874
MscI TGGCCA 1 cut(s) 141
MseI TTAA 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 2 cut(s) 577, 719
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 5 cut(s) 45, 343, 344, 731, 803
MunI CAATTG 1 cut(s) 451
MvaI CCWGG 3 cut(s) 45, 731, 803
MwoI GCNNNNNNNGC 5 cut(s) 222, 270, 429, 566, 805
NarI GGCGCC 1 cut(s) 806
NciI CCSGG 2 cut(s) 343, 344
NdeII GATC 2 cut(s) 49, 499
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 2 cut(s) 549, 807
NmuCI GTSAC 2 cut(s) 586, 886
PdmI GAANNNNTTC 1 cut(s) 874
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 736
PkrI GCNGC 6 cut(s) 9, 489, 532, 559, 579, 718
PleI GAGTC 3 cut(s) 368, 784, 820
PluTI GGCGCC 1 cut(s) 809
PpsI GAGTC 3 cut(s) 368, 784, 820
PpuMI RGGWCCY 1 cut(s) 548
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 3 cut(s) 43, 729, 801
PspGI CCWGG 3 cut(s) 43, 729, 801
PspN4I GGNNCC 2 cut(s) 549, 807
PspPI GGNCC 3 cut(s) 191, 391, 548
PspPPI RGGWCCY 1 cut(s) 548
PsyI GACNNNGTC 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 2 cut(s) 296, 647
RsaNI GTAC 2 cut(s) 295, 646
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 6 cut(s) 8, 488, 531, 558, 578, 717
Sau3AI GATC 2 cut(s) 49, 499
Sau96I GGNCC 3 cut(s) 191, 391, 548
SchI GAGTC 3 cut(s) 368, 785, 821
ScrFI CCNGG 5 cut(s) 45, 343, 344, 731, 803
SduI GDGCHC 2 cut(s) 227, 359
SfaNI GCATC 3 cut(s) 105, 542, 779
SfcI CTRYAG 1 cut(s) 615
SfoI GGCGCC 1 cut(s) 807
SinI GGWCC 3 cut(s) 191, 391, 548
SmaI CCCGGG 1 cut(s) 344
Sse9I AATT 1 cut(s) 451
SsiI CCGC 1 cut(s) 575
SspDI GGCGCC 1 cut(s) 805
SspI AATATT 1 cut(s) 308
SspMI CTAG 1 cut(s) 639
StyD4I CCNGG 5 cut(s) 43, 341, 342, 729, 801
TaaI ACNGT 5 cut(s) 163, 245, 299, 635, 650
TaiI ACGT 2 cut(s) 139, 356
TaqI TCGA 1 cut(s) 397
TasI AATT 1 cut(s) 451
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 3 cut(s) 168, 250, 372
TseFI GTSAC 2 cut(s) 586, 886
TseI GCWGC 6 cut(s) 7, 487, 530, 557, 577, 716
Tsp45I GTSAC 2 cut(s) 586, 886
TspDTI ATGAA 1 cut(s) 113
TspMI CCCGGG 1 cut(s) 342
TspRI CASTG 3 cut(s) 168, 250, 372
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 736
VneI GTGCAC 2 cut(s) 223, 355
VpaK11BI GGWCC 3 cut(s) 191, 391, 548
XagI CCTNNNNNAGG 1 cut(s) 837
XmaI CCCGGG 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 874
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.