AT5G06590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012098
Physical Location & Seq
Forward (+)
2016566 .. 2018968
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06590.1

Sequence Viewer

Length: 945 bp
ATGGAGGAAGAGCTCAAGAGCTTGAGCAAAAGCTTAGGAGGATTCTGCAATCATCTTCAAAGTAGCTGTGATGCTTTCAATCACTCTCTCCAGCGTCGCCCTATTCCTCTCGATTCGGCTTCATCGACGTTCATCAAGGGTCTCAATCGTCGAATCTCCACCGCAGCTTCCGAGCTCAGTTTTCTGGAATCTATGTCTTTTGGTACAGTCTCCTTCGAAGAGCTTCTGGGTCACTGTAGTCAGATCTACAAGAATAATCAAAAAGATCTTTTGCATCTCCAGGACCGCCTCACAGATTTCGGCTATGTTCCTGAAATTGAGATTGATGAAGGTAGAGATGAAGAATCTGTCTTTGGAGCATTTGGTCATGAAGCTTCAAAGCATTCGGATGATGATTTGGAGTCTCATTCATTGCAATGTTCAATCAAAAAAGGATTAGACGAGGACAATCTTCTAGATAATTCACTAAATTTGAAGAACCTTGGCCTTTCAGATGCTTGTCTTGCTTATTTAGCTACAGGAGTTAATGATAATGTGAAGGATCCTGATACGTCTTTGAAAGAATCAGTGAAGGGTAAATCATTTGACACAAGGGCTCTACCTGCCCCAAATGCGTCAGAGCTTTCCAATGAAGATGAGTATGCAACACTAGAGATGGATAAAACTTCAGGGCCTACATTAACATTGATAAAAGAAGAATATGATAGTCTTCCCTCTTTCATGAAGTCTCTAGCATCGTGGGAGGATCTGCTAAGTGCCGTGCAGAAATTCAACTCGGTCCTCGATAGCAAGAAAGAAATAAACGGGTCCTACTACTTCCGTGCAGATGAGATTCCGACTCTAGGACTTGGCCACAAGGAGAAAGCGTATACGTTGCTCCTGACACGGATGAAGAGACTTGTGGTTGAGACAACGGACGGAGTTATATCTTATAGAGTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

34.86

Weight (kDa)

4.83

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06590 AT5G06590
fragaria_vesca FvH4_6g21190 FvH4_6g21190
malus_domestica MD12G1047800.v1.1 MD14G1046200.v1.1
prunus_persica Prupe.7G088000_v2.0.a1
pyrus_communis pycom12g04100 pycom14g03870
rosa_chinensis RchiOBHm_Chr3g0477671
rosa_laevigata RLG00000023702
rosa_multiflora Rmu_sc0006187.1_g000003
rosa_roxburghii Rroxscaffold_6G00403770
rosa_rugosa Rorug03G0162600
rosa_samantha Rh3AG212600 Rh3BG246200 Rh3CG239900 Rh3DG239400
rosa_wichuraiana Rw3G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 610
AccI GTMKAC 1 cut(s) 869
AciI CCGC 2 cut(s) 162, 286
AclWI GGATC 3 cut(s) 536, 549, 753
AcoI YGGCCR 1 cut(s) 850
AcsI RAATTY 2 cut(s) 469, 767
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 842
AgsI TTSAA 7 cut(s) 59, 79, 378, 423, 475, 559, 772
AjnI CCWGG 1 cut(s) 279
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
Alw21I GWGCWC 2 cut(s) 15, 177
Alw26I GTCTC 6 cut(s) 146, 214, 408, 732, 889, 902
AlwI GGATC 3 cut(s) 536, 549, 753
AoxI GGCC 3 cut(s) 484, 671, 850
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 2 cut(s) 469, 767
Asp700I GAANNNNTTC 1 cut(s) 222
AspS9I GGNCC 4 cut(s) 283, 671, 778, 807
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 3 cut(s) 283, 778, 807
BalI TGGCCA 1 cut(s) 852
BamHI GGATCC 1 cut(s) 541
BanII GRGCYC 3 cut(s) 15, 177, 598
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 2 cut(s) 15, 177
BbvI GCAGC 1 cut(s) 176
BccI CCATC 1 cut(s) 649
BceAI ACGGC 1 cut(s) 743
BciT130I CCWGG 1 cut(s) 281
BcoDI GTCTC 6 cut(s) 146, 214, 408, 732, 889, 902
BfaI CTAG 4 cut(s) 455, 650, 731, 842
BfmI CTRYAG 2 cut(s) 235, 516
BfuAI ACCTGC 1 cut(s) 610
BglII AGATCT 2 cut(s) 243, 265
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 3 cut(s) 283, 778, 807
BmgT120I GGNCC 4 cut(s) 283, 671, 778, 807
BmiI GGNNCC 2 cut(s) 543, 808
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 4 cut(s) 61, 283, 484, 743
BpiI GAAGAC 1 cut(s) 701
BpmI CTGGAG 2 cut(s) 74, 263
Bpu10I CCTNAGC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bsc4I CCNNNNNNNGG 1 cut(s) 842
Bse3DI GCAATG 2 cut(s) 410, 422
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 2 cut(s) 394, 894
BseLI CCNNNNNNNGG 1 cut(s) 842
BseMI GCAATG 2 cut(s) 410, 422
BseMII CTCAG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 176
BsgI GTGCAG 2 cut(s) 782, 843
BshFI GGCC 3 cut(s) 486, 673, 852
BsiHKAI GWGCWC 2 cut(s) 15, 177
BslI CCNNNNNNNGG 1 cut(s) 842
BsmAI GTCTC 6 cut(s) 146, 214, 408, 732, 889, 902
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 3 cut(s) 486, 673, 852
Bso31I GGTCTC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 3 cut(s) 15, 177, 598
Bsp143I GATC 4 cut(s) 243, 265, 541, 745
BspACI CCGC 2 cut(s) 162, 286
BspANI GGCC 3 cut(s) 486, 673, 852
BspCNI CTCAG 1 cut(s) 189
BspHI TCATGA 2 cut(s) 367, 720
BspLI GGNNCC 2 cut(s) 543, 808
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 3 cut(s) 536, 549, 753
BspQI GCTCTTC 2 cut(s) 3, 213
BspT104I TTCGAA 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 2 cut(s) 410, 422
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 4 cut(s) 243, 265, 541, 745
BssNAI GTATAC 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 481
Bst1107I GTATAC 1 cut(s) 870
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 2 cut(s) 208, 236
Bst6I CTCTTC 3 cut(s) 3, 213, 887
BstBI TTCGAA 1 cut(s) 216
BstDEI CTNAG 3 cut(s) 34, 176, 752
BstF5I GGATG 2 cut(s) 394, 894
BstKTI GATC 4 cut(s) 246, 268, 544, 748
BstMAI GTCTC 6 cut(s) 146, 214, 408, 732, 889, 902
BstMBI GATC 4 cut(s) 243, 265, 541, 745
BstMWI GCNNNNNNNGC 4 cut(s) 503, 512, 602, 611
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 279
BstSFI CTRYAG 2 cut(s) 235, 516
BstV1I GCAGC 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 4 cut(s) 243, 265, 541, 745
BstYI RGATCY 4 cut(s) 243, 265, 541, 745
BstZ17I GTATAC 1 cut(s) 870
BsuRI GGCC 3 cut(s) 486, 673, 852
BtsCI GGATG 2 cut(s) 394, 894
BtsIMutI CAGTG 2 cut(s) 232, 573
BveI ACCTGC 1 cut(s) 610
CciI TCATGA 2 cut(s) 367, 720
Cfr13I GGNCC 4 cut(s) 283, 671, 778, 807
CseI GACGC 2 cut(s) 83, 603
Csp6I GTAC 1 cut(s) 204
CviAII CATG 2 cut(s) 368, 721
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 3 cut(s) 34, 176, 752
DpnI GATC 4 cut(s) 245, 267, 543, 747
DpnII GATC 4 cut(s) 243, 265, 541, 745
EaeI YGGCCR 1 cut(s) 850
Eam1104I CTCTTC 3 cut(s) 3, 213, 887
EarI CTCTTC 3 cut(s) 3, 213, 887
Ecl136II GAGCTC 2 cut(s) 13, 175
Eco130I CCWWGG 1 cut(s) 481
Eco24I GRGCYC 3 cut(s) 15, 177, 598
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 3 cut(s) 283, 778, 807
Eco53kI GAGCTC 2 cut(s) 13, 175
Eco57I CTGAAG 1 cut(s) 651
EcoICRI GAGCTC 2 cut(s) 13, 175
EcoO109I RGGNCCY 2 cut(s) 671, 807
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 481
EcoT38I GRGCYC 3 cut(s) 15, 177, 598
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 2 cut(s) 371, 724
FatI CATG 2 cut(s) 367, 720
FblI GTMKAC 1 cut(s) 869
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 2 cut(s) 401, 901
FriOI GRGCYC 3 cut(s) 15, 177, 598
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 4 cut(s) 455, 650, 731, 842
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 2 cut(s) 74, 263
HaeIII GGCC 3 cut(s) 486, 673, 852
HgaI GACGC 2 cut(s) 83, 603
Hin1II CATG 2 cut(s) 371, 724
HindIII AAGCTT 2 cut(s) 31, 372
HinfI GANTC 9 cut(s) 42, 113, 153, 188, 344, 401, 563, 832, 838
Hpy166II GTNNAC 1 cut(s) 870
Hpy188I TCNGA 6 cut(s) 172, 243, 388, 493, 619, 837
Hpy188III TCNNGA 9 cut(s) 16, 110, 185, 311, 368, 455, 545, 721, 880
Hpy8I GTNNAC 1 cut(s) 870
Hpy99I CGWCG 3 cut(s) 99, 130, 153
HpyAV CCTTC 4 cut(s) 223, 323, 532, 565
HpyCH4III ACNGT 2 cut(s) 208, 236
HpyCH4IV ACGT 3 cut(s) 128, 551, 872
HpyCH4V TGCA 7 cut(s) 48, 274, 415, 644, 763, 824, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 503, 512, 602, 611
HpyF3I CTNAG 3 cut(s) 34, 176, 752
HpySE526I ACGT 3 cut(s) 128, 551, 872
Hsp92II CATG 2 cut(s) 371, 724
Kzo9I GATC 4 cut(s) 243, 265, 541, 745
LguI GCTCTTC 2 cut(s) 3, 213
LmnI GCTCC 2 cut(s) 356, 882
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 4 cut(s) 61, 283, 484, 743
MaeI CTAG 4 cut(s) 455, 650, 731, 842
MaeII ACGT 3 cut(s) 128, 551, 872
MaeIII GTNAC 1 cut(s) 230
MalI GATC 4 cut(s) 245, 267, 543, 747
MboI GATC 4 cut(s) 243, 265, 541, 745
MflI RGATCY 4 cut(s) 243, 265, 541, 745
MhlI GDGCHC 3 cut(s) 15, 177, 598
MlsI TGGCCA 1 cut(s) 852
MluCI AATT 4 cut(s) 315, 460, 469, 767
MluNI TGGCCA 1 cut(s) 852
MlyI GAGTC 2 cut(s) 410, 832
MmeI TCCRAC 1 cut(s) 860
MnlI CCTC 7 cut(s) 32, 117, 299, 436, 724, 736, 791
Mox20I TGGCCA 1 cut(s) 852
MroXI GAANNNNTTC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 852
MseI TTAA 2 cut(s) 525, 680
MslI CAYNNNNRTG 2 cut(s) 387, 415
Msp20I TGGCCA 1 cut(s) 852
MspR9I CCNGG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 1 cut(s) 281
MwoI GCNNNNNNNGC 4 cut(s) 503, 512, 602, 611
NdeII GATC 4 cut(s) 243, 265, 541, 745
NlaIII CATG 2 cut(s) 371, 724
NlaIV GGNNCC 2 cut(s) 543, 808
NmuCI GTSAC 1 cut(s) 230
NspV TTCGAA 1 cut(s) 216
PagI TCATGA 2 cut(s) 367, 720
PciSI GCTCTTC 2 cut(s) 3, 213
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PctI GAATGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 7 cut(s) 42, 113, 153, 188, 344, 563, 832
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 2 cut(s) 409, 832
PpsI GAGTC 2 cut(s) 409, 832
PpuMI RGGWCCY 1 cut(s) 807
Psp124BI GAGCTC 2 cut(s) 15, 177
Psp5II RGGWCCY 1 cut(s) 807
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 543, 808
PspPI GGNCC 4 cut(s) 283, 671, 778, 807
PspPPI RGGWCCY 1 cut(s) 807
PsuI RGATCY 4 cut(s) 243, 265, 541, 745
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
RseI CAYNNNNRTG 2 cut(s) 387, 415
SacI GAGCTC 2 cut(s) 15, 177
SapI GCTCTTC 2 cut(s) 3, 213
SaqAI TTAA 2 cut(s) 525, 680
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 4 cut(s) 243, 265, 541, 745
Sau96I GGNCC 4 cut(s) 283, 671, 778, 807
SchI GAGTC 2 cut(s) 410, 832
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 3 cut(s) 15, 177, 598
SfaNI GCATC 4 cut(s) 61, 283, 484, 743
SfcI CTRYAG 2 cut(s) 235, 516
SfuI TTCGAA 1 cut(s) 216
SinI GGWCC 3 cut(s) 283, 778, 807
SmiMI CAYNNNNRTG 2 cut(s) 387, 415
SmlI CTYRAG 2 cut(s) 14, 22
SmoI CTYRAG 2 cut(s) 14, 22
Sse9I AATT 4 cut(s) 315, 460, 469, 767
SsiI CCGC 2 cut(s) 162, 286
SspMI CTAG 4 cut(s) 455, 650, 731, 842
SstI GAGCTC 2 cut(s) 15, 177
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 2 cut(s) 208, 236
TaiI ACGT 3 cut(s) 131, 554, 875
TaqI TCGA 5 cut(s) 111, 125, 151, 216, 783
TaqII GACCGA 1 cut(s) 766
TasI AATT 4 cut(s) 315, 460, 469, 767
TfiI GAWTC 7 cut(s) 42, 113, 153, 188, 344, 563, 832
Tru1I TTAA 2 cut(s) 525, 680
Tru9I TTAA 2 cut(s) 525, 680
TscAI CASTG 2 cut(s) 239, 573
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 230
TspGWI ACGGA 4 cut(s) 809, 901, 929, 933
TspRI CASTG 2 cut(s) 239, 573
VpaK11BI GGWCC 3 cut(s) 283, 778, 807
XapI RAATTY 2 cut(s) 469, 767
XbaI TCTAGA 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 869
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 4 cut(s) 455, 650, 731, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.