MD12G1047800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0012098
Physical Location & Seq
Forward (+)
5445366 .. 5447472
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1047800.v1.1.491

Sequence Viewer

Length: 357 bp
ATGAGTTTTAAGTCCTTTAAGGGGTCGTATGATGCTTCCACGAAGACCTCAGGAGCTCCCAGAGATGGATTGCTATCTGATTTCGGGGAAGTTGAGGATAAACCAAAGCTAGCTGAAGTTCCTTTGCCTCTTGTAAAGGTATCCCAGGATGACTACGAGAGCCTTCCTTCCTACATGAAAAGTCTAGCACCTTGGGAGGACTTGGTTGCCGCTGTCGAGAAGATTAATTCAAGCCTGAAACAGAAAGCAAGGGGGAATAATTTCTTTCATCAAGATGAAATTTCGTCCTTGGGCTTAGGGCTGAAAGCGAGCTCTTTGCTCCTGCTTGTACGCATGAATCGATTTTTTAGACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.08

Weight (kDa)

7.93

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06590 AT5G06590
fragaria_vesca FvH4_6g21190 FvH4_6g21190
malus_domestica MD12G1047800.v1.1 MD14G1046200.v1.1
prunus_persica Prupe.7G088000_v2.0.a1
pyrus_communis pycom12g04100 pycom14g03870
rosa_chinensis RchiOBHm_Chr3g0477671
rosa_laevigata RLG00000023702
rosa_multiflora Rmu_sc0006187.1_g000003
rosa_roxburghii Rroxscaffold_6G00403770
rosa_rugosa Rorug03G0162600
rosa_samantha Rh3AG212600 Rh3BG246200 Rh3CG239900 Rh3DG239400
rosa_wichuraiana Rw3G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 2 cut(s) 21, 65
AgsI TTSAA 1 cut(s) 231
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 4 cut(s) 56, 109, 113, 312
AluI AGCT 4 cut(s) 56, 109, 113, 312
Alw21I GWGCWC 2 cut(s) 58, 314
ApoI RAATTY 1 cut(s) 279
AseI ATTAAT 1 cut(s) 225
Asp700I GAANNNNTTC 1 cut(s) 260
AsuNHI GCTAGC 1 cut(s) 109
AxyI CCTNAGG 1 cut(s) 49
BanII GRGCYC 2 cut(s) 58, 314
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 2 cut(s) 58, 314
BccI CCATC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 1 cut(s) 146
BciVI GTATCC 1 cut(s) 151
BfaI CTAG 2 cut(s) 110, 185
BfuI GTATCC 1 cut(s) 151
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 22
BmtI GCTAGC 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 295
Bsa29I ATCGAT 1 cut(s) 340
BsaBI GATNNNNATC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 144, 191, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 65
Bse21I CCTNAGG 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 1 cut(s) 146
BseCI ATCGAT 1 cut(s) 340
BseDI CCNNGG 3 cut(s) 144, 191, 288
BseGI GGATG 1 cut(s) 154
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 21, 65
BseMII CTCAG 1 cut(s) 63
BshVI ATCGAT 1 cut(s) 340
BsiHKAI GWGCWC 2 cut(s) 58, 314
BslI CCNNNNNNNGG 2 cut(s) 21, 65
Bsp1286I GDGCHC 2 cut(s) 58, 314
BspACI CCGC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 62
BspDI ATCGAT 1 cut(s) 340
BspOI GCTAGC 1 cut(s) 113
BssECI CCNNGG 3 cut(s) 144, 191, 288
BssT1I CCWWGG 2 cut(s) 191, 288
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 111, 310
BstDEI CTNAG 2 cut(s) 49, 295
BstF5I GGATG 1 cut(s) 154
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 50
Bsu15I ATCGAT 1 cut(s) 340
Bsu36I CCTNAGG 1 cut(s) 49
BsuI GTATCC 1 cut(s) 151
BsuTUI ATCGAT 1 cut(s) 340
BtsCI GGATG 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 111, 310
ClaI ATCGAT 1 cut(s) 340
Csp6I GTAC 1 cut(s) 329
CviAII CATG 2 cut(s) 175, 334
CviJI RGCY 8 cut(s) 56, 109, 113, 162, 234, 294, 301, 312
CviKI_1 RGCY 8 cut(s) 56, 109, 113, 162, 234, 294, 301, 312
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 2 cut(s) 49, 295
Ecl136II GAGCTC 2 cut(s) 56, 312
Eco130I CCWWGG 2 cut(s) 191, 288
Eco24I GRGCYC 2 cut(s) 58, 314
Eco53kI GAGCTC 2 cut(s) 56, 312
Eco57I CTGAAG 1 cut(s) 135
Eco81I CCTNAGG 1 cut(s) 49
EcoICRI GAGCTC 2 cut(s) 56, 312
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 2 cut(s) 191, 288
EcoT38I GRGCYC 2 cut(s) 58, 314
ErhI CCWWGG 2 cut(s) 191, 288
FaeI CATG 2 cut(s) 178, 337
FaiI YATR 3 cut(s) 30, 176, 335
FatI CATG 2 cut(s) 174, 333
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 2 cut(s) 58, 314
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 110, 185
GluI GCNGC 1 cut(s) 210
Hin1II CATG 2 cut(s) 178, 337
HinfI GANTC 1 cut(s) 337
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 3 cut(s) 51, 217, 272
HpyAV CCTTC 2 cut(s) 173, 177
HpyCH4III ACNGT 1 cut(s) 354
HpyF3I CTNAG 2 cut(s) 49, 295
Hsp92II CATG 2 cut(s) 178, 337
LmnI GCTCC 3 cut(s) 53, 61, 324
LpnPI CCDG 6 cut(s) 36, 73, 131, 158, 248, 335
LweI GCATC 1 cut(s) 22
MaeI CTAG 2 cut(s) 110, 185
MboII GAAGA 2 cut(s) 55, 232
MhlI GDGCHC 2 cut(s) 58, 314
MluCI AATT 3 cut(s) 226, 259, 279
MnlI CCTC 4 cut(s) 58, 88, 138, 190
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 3 cut(s) 9, 18, 225
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
NheI GCTAGC 1 cut(s) 109
NlaIII CATG 2 cut(s) 178, 337
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 211
PshBI ATTAAT 1 cut(s) 225
Psp124BI GAGCTC 2 cut(s) 58, 314
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 2 cut(s) 58, 314
SaqAI TTAA 3 cut(s) 9, 18, 225
SatI GCNGC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 2 cut(s) 58, 314
SetI ASST 7 cut(s) 50, 58, 111, 115, 141, 193, 314
SfaNI GCATC 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 3 cut(s) 226, 259, 279
SsiI CCGC 1 cut(s) 210
SspMI CTAG 2 cut(s) 110, 185
SstI GAGCTC 2 cut(s) 58, 314
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 2 cut(s) 191, 288
TaaI ACNGT 1 cut(s) 354
TaqI TCGA 2 cut(s) 216, 340
TasI AATT 3 cut(s) 226, 259, 279
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 3 cut(s) 9, 18, 225
Tru9I TTAA 3 cut(s) 9, 18, 225
TspDTI ATGAA 4 cut(s) 191, 257, 291, 350
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 2 cut(s) 110, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.