FvH4_6g21190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012098
Physical Location & Seq
Forward (+)
14744468 .. 14747300
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21190.t1

Sequence Viewer

Length: 864 bp
ATGGAGGACTCGATTCGAAGCTACTGCAATTCCATGGCCTCCTTCTGCAACCACCTCCAGAGCAGCTGCGACGCCCTCAAGACCTCCATCGACCGCCGCCCCATCCCTCTCGCCAGCGCCTCCTCCACCTTCATCCACTCCCTCAACCGCCGCGTCTCCGCCGCCAGCGCCCACCTCAACCTCCTCGAAACGATGTCGTTCGACACCGTCTCCTTTGAGGAGCTGCTCGGTCACTGCAACGAGGTCTACAAGGACAACCAAACCCGCCTCCTCCACCTCCAAGACCGCCTCCAGCCCTTCGGTTACGTCCCCGAAATTGAAATCGATGAGGATGACGATGTCTCAACGCCGATTACTGAACAGGATGGATCGGATGCGCCTGAGGACGAAGACGATTTATTGGACGAGTCATTAAGTCTGAAGAAGCTTGGGCTTTCGGATGCTTCCCTTGCCACTCTAGCATTCCAAGCTAATGCTAGAAACGAGGATCAAGATGTATCTTTTCCTTCTAAGGACAGCTCGGGAGCGTCTGAAGATGGATCATTCTCGGATTCTGGGGAAGCAGAGGATAAGCAAATGATAGCGCTAGCTCCGTTGCAACTAGTGAAGGTTTGCAGGGATGATTACGAGTGTCTTCCTTCCTACATGAAAAGTCTAGCGCCTTGGGAGGACCTGCTTGCTGCTGTAGAGAAGATCAACTCGGGCCTGAAACAGAAAACAAGTGGAGGAAATCTCTTCCACCAAGATGAAATTTCATCCTTGGGTTTGGGGCCTAAAGCTAGATCTTTTTTGCTGCTGCTTGTACGAATGAACCAATTAGTTGTTGAGACAGTAGATGGTGTGATATCCTACCGAGTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

31.59

Weight (kDa)

4.43

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06590 AT5G06590
fragaria_vesca FvH4_6g21190 FvH4_6g21190
malus_domestica MD12G1047800.v1.1 MD14G1046200.v1.1
prunus_persica Prupe.7G088000_v2.0.a1
pyrus_communis pycom12g04100 pycom14g03870
rosa_chinensis RchiOBHm_Chr3g0477671
rosa_laevigata RLG00000023702
rosa_multiflora Rmu_sc0006187.1_g000003
rosa_roxburghii Rroxscaffold_6G00403770
rosa_rugosa Rorug03G0162600
rosa_samantha Rh3AG212600 Rh3BG246200 Rh3CG239900 Rh3DG239400
rosa_wichuraiana Rw3G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 681
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 153
AciI CCGC 8 cut(s) 94, 97, 148, 151, 159, 162, 265, 286
AclWI GGATC 3 cut(s) 376, 495, 547
AcsI RAATTY 1 cut(s) 750
AcuI CTGAAG 2 cut(s) 440, 552
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 1 cut(s) 804
AfeI AGCGCT 1 cut(s) 585
AgsI TTSAA 1 cut(s) 320
AhlI ACTAGT 1 cut(s) 601
AluBI AGCT 8 cut(s) 21, 66, 223, 427, 470, 519, 590, 779
AluI AGCT 8 cut(s) 21, 66, 223, 427, 470, 519, 590, 779
Alw26I GTCTC 4 cut(s) 160, 214, 346, 821
AlwI GGATC 3 cut(s) 376, 495, 547
Ama87I CYCGRG 2 cut(s) 520, 700
Aor51HI AGCGCT 1 cut(s) 585
AoxI GGCC 3 cut(s) 36, 703, 770
ApeKI GCWGC 6 cut(s) 63, 66, 223, 680, 793, 796
ApoI RAATTY 1 cut(s) 750
AspLEI GCGC 5 cut(s) 119, 170, 379, 586, 661
AspS9I GGNCC 3 cut(s) 670, 703, 770
AsuII TTCGAA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 586
AvaI CYCGRG 2 cut(s) 520, 700
AvaII GGWCC 1 cut(s) 670
AxyI CCTNAGG 1 cut(s) 381
BbsI GAAGAC 2 cut(s) 396, 626
BbvI GCAGC 6 cut(s) 53, 75, 210, 667, 780, 783
BccI CCATC 5 cut(s) 95, 110, 359, 530, 830
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BcoDI GTCTC 4 cut(s) 160, 214, 346, 821
BcuI ACTAGT 1 cut(s) 601
BfaI CTAG 6 cut(s) 458, 477, 587, 602, 656, 780
BfmI CTRYAG 1 cut(s) 684
BfoI RGCGCY 4 cut(s) 120, 171, 587, 662
BfuAI ACCTGC 1 cut(s) 681
BglII AGATCT 1 cut(s) 782
BisI GCNGC 9 cut(s) 64, 67, 97, 151, 162, 224, 681, 794, 797
BlsI GCNGC 9 cut(s) 65, 68, 98, 152, 163, 225, 682, 795, 798
Bme18I GGWCC 1 cut(s) 670
BmeT110I CYCGRG 2 cut(s) 520, 700
BmgT120I GGNCC 3 cut(s) 670, 703, 770
BmiI GGNNCC 1 cut(s) 771
BmsI GCATC 2 cut(s) 364, 430
BmtI GCTAGC 1 cut(s) 590
BpiI GAAGAC 2 cut(s) 396, 626
BplI GAGNNNNNCTC 2 cut(s) 717, 749
BpmI CTGGAG 2 cut(s) 41, 275
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 33, 662, 759
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bse21I CCTNAGG 1 cut(s) 381
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 33, 662, 759
BseGI GGATG 8 cut(s) 102, 132, 337, 370, 379, 445, 625, 755
BseMII CTCAG 1 cut(s) 372
BseRI GAGGAG 4 cut(s) 112, 173, 233, 260
BseXI GCAGC 6 cut(s) 53, 75, 210, 667, 780, 783
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 3 cut(s) 38, 705, 772
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 94
BsiHKCI CYCGRG 2 cut(s) 520, 700
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 4 cut(s) 160, 214, 346, 821
BsmBI CGTCTC 2 cut(s) 160, 214
BsmFI GGGAC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 3 cut(s) 38, 705, 772
BsoBI CYCGRG 2 cut(s) 520, 700
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 5 cut(s) 368, 487, 539, 693, 782
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 8 cut(s) 94, 97, 148, 151, 159, 162, 265, 286
BspANI GGCC 3 cut(s) 38, 705, 772
BspCNI CTCAG 1 cut(s) 373
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 771
BspMI ACCTGC 1 cut(s) 681
BspOI GCTAGC 1 cut(s) 590
BspPI GGATC 3 cut(s) 376, 495, 547
BspT104I TTCGAA 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 33, 662, 759
BssMI GATC 5 cut(s) 368, 487, 539, 693, 782
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 3 cut(s) 33, 662, 759
Bst4CI ACNGT 2 cut(s) 208, 832
Bst6I CTCTTC 1 cut(s) 740
BstACI GRCGYC 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 4 cut(s) 115, 166, 588, 678
BstDEI CTNAG 2 cut(s) 381, 510
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 8 cut(s) 102, 132, 337, 370, 379, 445, 625, 755
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 4 cut(s) 120, 171, 587, 662
BstHHI GCGC 5 cut(s) 119, 170, 379, 586, 661
BstKTI GATC 5 cut(s) 371, 490, 542, 696, 785
BstMAI GTCTC 4 cut(s) 160, 214, 346, 821
BstMBI GATC 5 cut(s) 368, 487, 539, 693, 782
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 4 cut(s) 167, 449, 458, 467
BstSFI CTRYAG 1 cut(s) 684
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 6 cut(s) 53, 75, 210, 667, 780, 783
BstV2I GAAGAC 2 cut(s) 396, 626
BstX2I RGATCY 1 cut(s) 782
BstYI RGATCY 1 cut(s) 782
Bsu15I ATCGAT 1 cut(s) 324
Bsu36I CCTNAGG 1 cut(s) 381
BsuRI GGCC 3 cut(s) 38, 705, 772
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 8 cut(s) 102, 132, 337, 370, 379, 445, 625, 755
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 681
Cac8I GCNNGC 4 cut(s) 115, 166, 588, 678
CfoI GCGC 5 cut(s) 119, 170, 379, 586, 661
Cfr13I GGNCC 3 cut(s) 670, 703, 770
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 3 cut(s) 80, 142, 516
Csp6I GTAC 1 cut(s) 803
CviAII CATG 2 cut(s) 34, 646
CviQI GTAC 1 cut(s) 803
DdeI CTNAG 2 cut(s) 381, 510
DpnI GATC 5 cut(s) 370, 489, 541, 695, 784
DpnII GATC 5 cut(s) 368, 487, 539, 693, 782
Eam1104I CTCTTC 1 cut(s) 740
EarI CTCTTC 1 cut(s) 740
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 3 cut(s) 33, 662, 759
Eco32I GATATC 1 cut(s) 846
Eco47I GGWCC 1 cut(s) 670
Eco47III AGCGCT 1 cut(s) 585
Eco57I CTGAAG 2 cut(s) 440, 552
Eco81I CCTNAGG 1 cut(s) 381
Eco88I CYCGRG 2 cut(s) 520, 700
EcoO109I RGGNCCY 2 cut(s) 670, 770
EcoRV GATATC 1 cut(s) 846
EcoT14I CCWWGG 3 cut(s) 33, 662, 759
ErhI CCWWGG 3 cut(s) 33, 662, 759
Esp3I CGTCTC 2 cut(s) 160, 214
FaeI CATG 2 cut(s) 37, 649
FaiI YATR 3 cut(s) 35, 647, 862
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 33, 645
FauI CCCGC 1 cut(s) 272
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 9 cut(s) 64, 67, 97, 151, 162, 224, 681, 794, 797
FokI GGATG 8 cut(s) 89, 119, 344, 377, 386, 452, 632, 742
Fsp4HI GCNGC 9 cut(s) 64, 67, 97, 151, 162, 224, 681, 794, 797
FspBI CTAG 6 cut(s) 458, 477, 587, 602, 656, 780
GlaI GCGC 5 cut(s) 118, 169, 378, 585, 660
GluI GCNGC 9 cut(s) 64, 67, 97, 151, 162, 224, 681, 794, 797
GsuI CTGGAG 2 cut(s) 41, 275
HaeII RGCGCY 4 cut(s) 120, 171, 587, 662
HaeIII GGCC 3 cut(s) 38, 705, 772
HgaI GACGC 3 cut(s) 80, 142, 516
HhaI GCGC 5 cut(s) 119, 170, 379, 586, 661
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 2 cut(s) 37, 649
Hin6I GCGC 5 cut(s) 117, 168, 377, 584, 659
HinP1I GCGC 5 cut(s) 117, 168, 377, 584, 659
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 4 cut(s) 8, 13, 407, 551
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 5 cut(s) 373, 420, 439, 532, 550
Hpy188III TCNNGA 4 cut(s) 58, 79, 491, 522
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 6 cut(s) 52, 139, 307, 516, 601, 648
HpyCH4III ACNGT 2 cut(s) 208, 832
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 5 cut(s) 27, 48, 237, 598, 615
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 449, 458, 467
HpyF3I CTNAG 2 cut(s) 381, 510
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 2 cut(s) 37, 649
HspAI GCGC 5 cut(s) 117, 168, 377, 584, 659
Kzo9I GATC 5 cut(s) 368, 487, 539, 693, 782
LmnI GCTCC 3 cut(s) 220, 524, 595
Lsp1109I GCAGC 6 cut(s) 53, 75, 210, 667, 780, 783
LweI GCATC 2 cut(s) 364, 430
MaeI CTAG 6 cut(s) 458, 477, 587, 602, 656, 780
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 230, 302
MalI GATC 5 cut(s) 370, 489, 541, 695, 784
MboI GATC 5 cut(s) 368, 487, 539, 693, 782
MboII GAAGA 6 cut(s) 401, 433, 545, 626, 703, 727
MflI RGATCY 1 cut(s) 782
MluCI AATT 4 cut(s) 28, 315, 750, 815
MlyI GAGTC 2 cut(s) 2, 416
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 461
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 167, 449, 458, 467
NcoI CCATGG 1 cut(s) 33
NdeII GATC 5 cut(s) 368, 487, 539, 693, 782
NheI GCTAGC 1 cut(s) 586
NlaIII CATG 2 cut(s) 37, 649
NlaIV GGNNCC 1 cut(s) 771
NmuCI GTSAC 1 cut(s) 230
NspV TTCGAA 1 cut(s) 16
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 2 cut(s) 13, 551
PflFI GACNNNGTC 2 cut(s) 206, 338
PkrI GCNGC 9 cut(s) 65, 68, 98, 152, 163, 225, 682, 795, 798
PleI GAGTC 2 cut(s) 2, 415
PpsI GAGTC 2 cut(s) 2, 415
PpuMI RGGWCCY 1 cut(s) 670
Psp5II RGGWCCY 1 cut(s) 670
PspN4I GGNNCC 1 cut(s) 771
PspPI GGNCC 3 cut(s) 670, 703, 770
PspPPI RGGWCCY 1 cut(s) 670
PsuI RGATCY 1 cut(s) 782
PsyI GACNNNGTC 2 cut(s) 206, 338
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 1 cut(s) 804
RsaNI GTAC 1 cut(s) 803
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 9 cut(s) 64, 67, 97, 151, 162, 224, 681, 794, 797
Sau3AI GATC 5 cut(s) 368, 487, 539, 693, 782
Sau96I GGNCC 3 cut(s) 670, 703, 770
SchI GAGTC 2 cut(s) 2, 416
SfaNI GCATC 2 cut(s) 364, 430
SfcI CTRYAG 1 cut(s) 684
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 601
Sse9I AATT 4 cut(s) 28, 315, 750, 815
SsiI CCGC 8 cut(s) 94, 97, 148, 151, 159, 162, 265, 286
SspMI CTAG 6 cut(s) 458, 477, 587, 602, 656, 780
StyI CCWWGG 3 cut(s) 33, 662, 759
TaaI ACNGT 2 cut(s) 208, 832
TaiI ACGT 1 cut(s) 309
TaqI TCGA 6 cut(s) 11, 16, 90, 186, 201, 324
TaqII GACCGA 1 cut(s) 218
TasI AATT 4 cut(s) 28, 315, 750, 815
TauI GCSGC 3 cut(s) 99, 153, 164
TfiI GAWTC 2 cut(s) 13, 551
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 6 cut(s) 63, 66, 223, 680, 793, 796
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 5 cut(s) 121, 662, 744, 762, 824
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 1 cut(s) 239
Tth111I GACNNNGTC 2 cut(s) 206, 338
VpaK11BI GGWCC 1 cut(s) 670
XapI RAATTY 1 cut(s) 750
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 6 cut(s) 458, 477, 587, 602, 656, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.