Rorug03G0162600

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012098
Physical Location & Seq
Forward (+)
13505130 .. 13507746
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0162600.1

Sequence Viewer

Length: 222 bp
ATGATCGAGGTGGTGCTGAACGATCGTCTGGGGAAGAAGGTGAAGGTGAAGTGCAACGAGGACGACACCATCGGCGACCTGAAGAAGCTGGTGGCTGCTCAGACGGGTACCCGAGCCGATAAGATCCGGATCCAGAAGTGGTACAACGTCTACAAGGACCACATCACTCTCAGGGATTACGAAGTCCATGACGGCATGGGCCTCGAGCTCTACTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

73

Amino Acids

8.54

Weight (kDa)

7.83

Isoelectric Point (pI)

11.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 11 - 71 1.1e-06 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06590 AT5G06590
fragaria_vesca FvH4_6g21190 FvH4_6g21190
malus_domestica MD12G1047800.v1.1 MD14G1046200.v1.1
prunus_persica Prupe.7G088000_v2.0.a1
pyrus_communis pycom12g04100 pycom14g03870
rosa_chinensis RchiOBHm_Chr3g0477671
rosa_laevigata RLG00000023702
rosa_multiflora Rmu_sc0006187.1_g000003
rosa_roxburghii Rroxscaffold_6G00403770
rosa_rugosa Rorug03G0162600
rosa_samantha Rh3AG212600 Rh3BG246200 Rh3CG239900 Rh3DG239400
rosa_wichuraiana Rw3G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 150
AccIII TCCGGA 1 cut(s) 126
AclWI GGATC 3 cut(s) 118, 124, 137
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 2 cut(s) 109, 143
AluBI AGCT 2 cut(s) 88, 208
AluI AGCT 2 cut(s) 88, 208
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 3 cut(s) 118, 124, 137
Ama87I CYCGRG 2 cut(s) 111, 203
Aor13HI TCCGGA 1 cut(s) 126
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 157, 199
AsuHPI GGTGA 2 cut(s) 52, 58
AvaI CYCGRG 2 cut(s) 111, 203
AvaII GGWCC 1 cut(s) 157
BamHI GGATCC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 2 cut(s) 111, 203
BmgT120I GGNCC 2 cut(s) 157, 199
BmiI GGNNCC 2 cut(s) 109, 131
BsaBI GATNNNNATC 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 128
BseAI TCCGGA 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 128
BseMII CTCAG 2 cut(s) 113, 184
BseXI GCAGC 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 2 cut(s) 111, 203
BsiSI CCGG 1 cut(s) 127
BsnI GGCC 1 cut(s) 201
BsoBI CYCGRG 2 cut(s) 111, 203
Bsp1286I GDGCHC 1 cut(s) 210
Bsp13I TCCGGA 1 cut(s) 126
Bsp143I GATC 4 cut(s) 3, 22, 123, 129
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 112, 183
BspEI TCCGGA 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 109, 131
BspPI GGATC 3 cut(s) 118, 124, 137
BspT107I GGYRCC 1 cut(s) 107
BssMI GATC 4 cut(s) 3, 22, 123, 129
BstDEI CTNAG 2 cut(s) 99, 170
BstKTI GATC 4 cut(s) 6, 25, 126, 132
BstMBI GATC 4 cut(s) 3, 22, 123, 129
BstMCI CGRYCG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 2 cut(s) 123, 129
BstYI RGATCY 2 cut(s) 123, 129
BsuRI GGCC 1 cut(s) 201
Cfr13I GGNCC 2 cut(s) 157, 199
Csp6I GTAC 2 cut(s) 108, 142
CviAII CATG 2 cut(s) 188, 196
CviJI RGCY 5 cut(s) 88, 95, 116, 201, 208
CviKI_1 RGCY 5 cut(s) 88, 95, 116, 201, 208
CviQI GTAC 2 cut(s) 108, 142
DdeI CTNAG 2 cut(s) 99, 170
DpnI GATC 4 cut(s) 5, 24, 125, 131
DpnII GATC 4 cut(s) 3, 22, 123, 129
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 101
Eco88I CYCGRG 2 cut(s) 111, 203
EcoICRI GAGCTC 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 2 cut(s) 191, 199
FaiI YATR 2 cut(s) 189, 197
FatI CATG 2 cut(s) 187, 195
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 127
Hin1II CATG 2 cut(s) 191, 199
HpaII CCGG 1 cut(s) 127
HphI GGTGA 2 cut(s) 52, 58
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 127, 133
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 31, 37
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 54
HpyF3I CTNAG 2 cut(s) 99, 170
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 191, 199
Kpn2I TCCGGA 1 cut(s) 126
KpnI GGTACC 1 cut(s) 111
Kzo9I GATC 4 cut(s) 3, 22, 123, 129
LpnPI CCDG 6 cut(s) 14, 74, 92, 140, 146, 157
Lsp1109I GCAGC 1 cut(s) 82
MaeII ACGT 1 cut(s) 147
MalI GATC 4 cut(s) 5, 24, 125, 131
MboI GATC 4 cut(s) 3, 22, 123, 129
MboII GAAGA 2 cut(s) 46, 94
MflI RGATCY 2 cut(s) 123, 129
MhlI GDGCHC 1 cut(s) 210
MnlI CCTC 2 cut(s) 52, 212
MroI TCCGGA 1 cut(s) 126
MspI CCGG 1 cut(s) 127
NdeII GATC 4 cut(s) 3, 22, 123, 129
NlaIII CATG 2 cut(s) 191, 199
NlaIV GGNNCC 2 cut(s) 109, 131
PaeR7I CTCGAG 1 cut(s) 203
PkrI GCNGC 1 cut(s) 97
Ple19I CGATCG 1 cut(s) 25
Psp124BI GAGCTC 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 109, 131
PspPI GGNCC 2 cut(s) 157, 199
PspXI VCTCGAGB 1 cut(s) 203
PsuI RGATCY 2 cut(s) 123, 129
PvuI CGATCG 1 cut(s) 25
RsaI GTAC 2 cut(s) 109, 143
RsaNI GTAC 2 cut(s) 108, 142
SacI GAGCTC 1 cut(s) 210
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 4 cut(s) 3, 22, 123, 129
Sau96I GGNCC 2 cut(s) 157, 199
SduI GDGCHC 1 cut(s) 210
SetI ASST 7 cut(s) 12, 42, 48, 81, 90, 150, 210
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 157
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SstI GAGCTC 1 cut(s) 210
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 6, 204
TseI GCWGC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 157
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.