Prupe.7G088000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012098
Physical Location & Seq
Reverse (-)
12185667 .. 12188283
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G088000.1

Sequence Viewer

Length: 903 bp
ATGGAGGAATCTATACGGAACTTGTGCAAGGGCGTAGCGTCCTTCTGCAACCACCTCCAGAGCAGCTGCGACGCCCTAAAAACCTCAGTCGACCGCCGCGCAATCCCTCTCGATACGGCGTCGTCCACCTTCCTCCAATCCCTCAACCGCCGCGTCTCCGCCGCCAGCACCCAGCTCAACCTCCTCGAAACGATGTCGTTCGGAACCGTCTCCTTCGAGGAGCTCCTGGGCCACTGCACCGAGGTCTACAAGGACAACCAAACCCGGCTCCTCCACCTCCAACGTCGTCTCTCTCCTTCGTCCGCTTACGACCCCGAAATTGAGATCGATGATCACGAAACGACGCCGGTTGATCCAGAGGACGGATTCGATCCACGTATCAGTGATGAAGAAGACGACTCTTTATTGGACGAGTCTTTGAGTTTAAAGAAGCTTGGACTTTCGGATGCTTCCCTTGCCACTTTAGCATTTCAAGCTAATGCTAGAAATGAGGATCCAGATATATCTTTGCATGAGTTTAAGTCCTTTAAGGGGTCATATGATCATTCTACGGATACCTCGGGAGCATCTGGAGATGGATTGCTCTCTGATTTTGGGGAAGGTGAGGATAAACCAAAGCTAGCTCAAGTTCCTTTGCCTCTTGTAAATGTATCTAGGGATGATTATGAGAGTCTTCCTTCCTACATGAAAAGCCTAGCACCTTGGGAGGACCTGCTTGCTGCTGTTGAGAAAATTAATTCAGGCCTGAAAGGAAAAGCAAAGGGAAGTAGTTTCTTCCACCAAGATGAAATTTCATCCTTGGGTTTGGGACCTAAAGCGAGATCTTATTTGCTGCTGCTTGTACGCATGAATCGATTAGTTGTCGAGACTGTAGATGGTTTAATATCATACAGAGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

33.01

Weight (kDa)

4.73

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06590 AT5G06590
fragaria_vesca FvH4_6g21190 FvH4_6g21190
malus_domestica MD12G1047800.v1.1 MD14G1046200.v1.1
prunus_persica Prupe.7G088000_v2.0.a1
pyrus_communis pycom12g04100 pycom14g03870
rosa_chinensis RchiOBHm_Chr3g0477671
rosa_laevigata RLG00000023702
rosa_multiflora Rmu_sc0006187.1_g000003
rosa_roxburghii Rroxscaffold_6G00403770
rosa_rugosa Rorug03G0162600
rosa_samantha Rh3AG212600 Rh3BG246200 Rh3CG239900 Rh3DG239400
rosa_wichuraiana Rw3G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 720
AccI GTMKAC 2 cut(s) 90, 246
AccII CGCG 2 cut(s) 99, 153
AciI CCGC 7 cut(s) 94, 97, 148, 151, 159, 162, 303
AclWI GGATC 4 cut(s) 347, 365, 488, 501
AcsI RAATTY 1 cut(s) 789
AcyI GRCGYC 3 cut(s) 72, 119, 344
AfaI GTAC 1 cut(s) 843
AfiI CCNNNNNNNGG 2 cut(s) 362, 531
AgsI TTSAA 1 cut(s) 473
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 7 cut(s) 66, 175, 223, 433, 476, 619, 623
AluI AGCT 7 cut(s) 66, 175, 223, 433, 476, 619, 623
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 4 cut(s) 160, 214, 293, 860
AlwI GGATC 4 cut(s) 347, 365, 488, 501
Ama87I CYCGRG 1 cut(s) 559
AoxI GGCC 2 cut(s) 229, 742
ApeKI GCWGC 5 cut(s) 63, 66, 719, 832, 835
ApoI RAATTY 1 cut(s) 789
AseI ATTAAT 1 cut(s) 735
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 3 cut(s) 229, 709, 809
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 614
AsuNHI GCTAGC 1 cut(s) 619
AvaI CYCGRG 1 cut(s) 559
AvaII GGWCC 2 cut(s) 709, 809
BamHI GGATCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 225
BbsI GAAGAC 2 cut(s) 399, 665
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 5 cut(s) 53, 75, 706, 819, 822
BccI CCATC 2 cut(s) 569, 869
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 227
BciVI GTATCC 1 cut(s) 547
BclI TGATCA 2 cut(s) 331, 541
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 4 cut(s) 160, 214, 293, 860
BfaI CTAG 4 cut(s) 483, 620, 654, 695
BfmI CTRYAG 1 cut(s) 870
BfuAI ACCTGC 1 cut(s) 720
BfuI GTATCC 1 cut(s) 547
BglII AGATCT 1 cut(s) 821
BisI GCNGC 8 cut(s) 64, 67, 97, 151, 162, 720, 833, 836
BlsI GCNGC 8 cut(s) 65, 68, 98, 152, 163, 721, 834, 837
Bme1390I CCNGG 2 cut(s) 227, 265
Bme18I GGWCC 2 cut(s) 709, 809
BmeT110I CYCGRG 1 cut(s) 559
BmgT120I GGNCC 3 cut(s) 229, 709, 809
BmiI GGNNCC 4 cut(s) 205, 269, 495, 810
BmrFI CCNGG 2 cut(s) 227, 265
BmsI GCATC 2 cut(s) 436, 575
BmtI GCTAGC 1 cut(s) 623
BpiI GAAGAC 2 cut(s) 399, 665
BpmI CTGGAG 2 cut(s) 41, 591
BpuEI CTTGAG 1 cut(s) 609
BpuMI CCSGG 1 cut(s) 265
Bsa29I ATCGAT 2 cut(s) 327, 853
BsaAI YACGTR 1 cut(s) 377
BsaHI GRCGYC 3 cut(s) 72, 119, 344
BsaJI CCNNGG 5 cut(s) 226, 240, 558, 701, 798
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 531
Bse118I RCCGGY 1 cut(s) 346
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 2 cut(s) 327, 853
BseDI CCNNGG 5 cut(s) 226, 240, 558, 701, 798
BseGI GGATG 3 cut(s) 451, 664, 794
BseLI CCNNNNNNNGG 2 cut(s) 362, 531
BseMII CTCAG 1 cut(s) 99
BseRI GAGGAG 3 cut(s) 173, 233, 260
BseXI GCAGC 5 cut(s) 53, 75, 706, 819, 822
BseYI CCCAGC 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 2 cut(s) 99, 153
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 2 cut(s) 231, 744
BshVI ATCGAT 2 cut(s) 327, 853
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 559
BsiSI CCGG 2 cut(s) 265, 347
BslFI GGGAC 1 cut(s) 822
BslI CCNNNNNNNGG 2 cut(s) 362, 531
BsmAI GTCTC 4 cut(s) 160, 214, 293, 860
BsmBI CGTCTC 3 cut(s) 160, 214, 293
BsmFI GGGAC 1 cut(s) 822
BsnI GGCC 2 cut(s) 231, 744
BsoBI CYCGRG 1 cut(s) 559
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 7 cut(s) 324, 331, 352, 370, 493, 541, 821
BspACI CCGC 7 cut(s) 94, 97, 148, 151, 159, 162, 303
BspANI GGCC 2 cut(s) 231, 744
BspCNI CTCAG 1 cut(s) 98
BspDI ATCGAT 2 cut(s) 327, 853
BspFNI CGCG 2 cut(s) 99, 153
BspLI GGNNCC 4 cut(s) 205, 269, 495, 810
BspMI ACCTGC 1 cut(s) 720
BspOI GCTAGC 1 cut(s) 623
BspPI GGATC 4 cut(s) 347, 365, 488, 501
BsrFI RCCGGY 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 5 cut(s) 226, 240, 558, 701, 798
BssMI GATC 7 cut(s) 324, 331, 352, 370, 493, 541, 821
BssNI GRCGYC 3 cut(s) 72, 119, 344
BssT1I CCWWGG 2 cut(s) 701, 798
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 208, 871
BstACI GRCGYC 3 cut(s) 72, 119, 344
BstBAI YACGTR 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 166, 621, 717
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 3 cut(s) 451, 664, 794
BstFNI CGCG 2 cut(s) 99, 153
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 7 cut(s) 327, 334, 355, 373, 496, 544, 824
BstMAI GTCTC 4 cut(s) 160, 214, 293, 860
BstMBI GATC 7 cut(s) 324, 331, 352, 370, 493, 541, 821
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 3 cut(s) 455, 464, 473
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 225, 263
BstSFI CTRYAG 1 cut(s) 870
BstUI CGCG 2 cut(s) 99, 153
BstV1I GCAGC 5 cut(s) 53, 75, 706, 819, 822
BstV2I GAAGAC 2 cut(s) 399, 665
BstX2I RGATCY 2 cut(s) 493, 821
BstYI RGATCY 2 cut(s) 493, 821
Bsu15I ATCGAT 2 cut(s) 327, 853
BsuI GTATCC 1 cut(s) 547
BsuRI GGCC 2 cut(s) 231, 744
BsuTUI ATCGAT 2 cut(s) 327, 853
BtsCI GGATG 3 cut(s) 451, 664, 794
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 232, 388
BveI ACCTGC 1 cut(s) 720
Cac8I GCNNGC 3 cut(s) 166, 621, 717
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 3 cut(s) 229, 709, 809
ClaI ATCGAT 2 cut(s) 327, 853
CseI GACGC 5 cut(s) 27, 80, 108, 142, 352
Csp6I GTAC 1 cut(s) 842
CviAII CATG 3 cut(s) 512, 685, 847
CviQI GTAC 1 cut(s) 842
DdeI CTNAG 1 cut(s) 85
DpnI GATC 7 cut(s) 326, 333, 354, 372, 495, 543, 823
DpnII GATC 7 cut(s) 324, 331, 352, 370, 493, 541, 821
DraI TTTAAA 1 cut(s) 426
EciI GGCGGA 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 2 cut(s) 701, 798
Eco147I AGGCCT 1 cut(s) 744
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 709, 809
Eco53kI GAGCTC 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 559
EcoICRI GAGCTC 1 cut(s) 223
EcoO109I RGGNCCY 2 cut(s) 709, 809
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 2 cut(s) 701, 798
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 2 cut(s) 701, 798
Esp3I CGTCTC 3 cut(s) 160, 214, 293
FaeI CATG 3 cut(s) 515, 688, 850
FaiI YATR 9 cut(s) 14, 503, 513, 538, 540, 666, 686, 848, 889
FaqI GGGAC 1 cut(s) 822
FatI CATG 3 cut(s) 511, 684, 846
FauNDI CATATG 1 cut(s) 538
FbaI TGATCA 2 cut(s) 331, 541
FblI GTMKAC 2 cut(s) 90, 246
Fnu4HI GCNGC 8 cut(s) 64, 67, 97, 151, 162, 720, 833, 836
FokI GGATG 3 cut(s) 458, 671, 781
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 8 cut(s) 64, 67, 97, 151, 162, 720, 833, 836
FspBI CTAG 4 cut(s) 483, 620, 654, 695
GlaI GCGC 1 cut(s) 100
GluI GCNGC 8 cut(s) 64, 67, 97, 151, 162, 720, 833, 836
GsaI CCCAGC 1 cut(s) 175
GsuI CTGGAG 2 cut(s) 41, 591
HaeIII GGCC 2 cut(s) 231, 744
HapII CCGG 2 cut(s) 265, 347
HgaI GACGC 5 cut(s) 27, 80, 108, 142, 352
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 3 cut(s) 72, 119, 344
Hin1II CATG 3 cut(s) 515, 688, 850
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 6 cut(s) 8, 366, 398, 413, 670, 850
HpaII CCGG 2 cut(s) 265, 347
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 3 cut(s) 91, 126, 247
Hpy188I TCNGA 3 cut(s) 203, 445, 589
Hpy188III TCNNGA 8 cut(s) 58, 110, 335, 356, 497, 561, 570, 865
Hpy8I GTNNAC 3 cut(s) 91, 126, 247
Hpy99I CGWCG 4 cut(s) 74, 124, 288, 346
HpyAV CCTTC 6 cut(s) 52, 139, 223, 306, 593, 687
HpyCH4III ACNGT 2 cut(s) 208, 871
HpyCH4IV ACGT 2 cut(s) 283, 376
HpyCH4V TGCA 4 cut(s) 27, 48, 237, 511
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 464, 473
HpyF3I CTNAG 1 cut(s) 85
HpySE526I ACGT 2 cut(s) 283, 376
Hsp92I GRCGYC 3 cut(s) 72, 119, 344
Hsp92II CATG 3 cut(s) 515, 688, 850
HspAI GCGC 1 cut(s) 99
Ksp22I TGATCA 2 cut(s) 331, 541
Kzo9I GATC 7 cut(s) 324, 331, 352, 370, 493, 541, 821
LmnI GCTCC 4 cut(s) 220, 228, 273, 563
Lsp1109I GCAGC 5 cut(s) 53, 75, 706, 819, 822
LweI GCATC 2 cut(s) 436, 575
MaeI CTAG 4 cut(s) 483, 620, 654, 695
MaeII ACGT 2 cut(s) 283, 376
MalI GATC 7 cut(s) 326, 333, 354, 372, 495, 543, 823
MboI GATC 7 cut(s) 324, 331, 352, 370, 493, 541, 821
MboII GAAGA 4 cut(s) 401, 404, 665, 766
MflI RGATCY 2 cut(s) 493, 821
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 4 cut(s) 318, 732, 736, 789
MlyI GAGTC 3 cut(s) 392, 422, 679
MmeI TCCRAC 1 cut(s) 304
MseI TTAA 5 cut(s) 425, 519, 528, 735, 881
MslI CAYNNNNRTG 1 cut(s) 783
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 2 cut(s) 265, 347
MspR9I CCNGG 2 cut(s) 227, 265
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 2 cut(s) 99, 153
MwoI GCNNNNNNNGC 3 cut(s) 455, 464, 473
NciI CCSGG 1 cut(s) 265
NdeI CATATG 1 cut(s) 538
NdeII GATC 7 cut(s) 324, 331, 352, 370, 493, 541, 821
NheI GCTAGC 1 cut(s) 619
NlaIII CATG 3 cut(s) 515, 688, 850
NlaIV GGNNCC 4 cut(s) 205, 269, 495, 810
PceI AGGCCT 1 cut(s) 744
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 850
PfeI GAWTC 3 cut(s) 8, 366, 850
PkrI GCNGC 8 cut(s) 65, 68, 98, 152, 163, 721, 834, 837
PleI GAGTC 3 cut(s) 392, 421, 678
PpsI GAGTC 3 cut(s) 392, 421, 678
Ppu21I YACGTR 1 cut(s) 377
PpuMI RGGWCCY 2 cut(s) 709, 809
PshBI ATTAAT 1 cut(s) 735
Psp124BI GAGCTC 1 cut(s) 225
Psp5II RGGWCCY 2 cut(s) 709, 809
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 4 cut(s) 205, 269, 495, 810
PspPI GGNCC 3 cut(s) 229, 709, 809
PspPPI RGGWCCY 2 cut(s) 709, 809
PsuI RGATCY 2 cut(s) 493, 821
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 1 cut(s) 843
RsaNI GTAC 1 cut(s) 842
RseI CAYNNNNRTG 1 cut(s) 783
SacI GAGCTC 1 cut(s) 225
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 5 cut(s) 425, 519, 528, 735, 881
SatI GCNGC 8 cut(s) 64, 67, 97, 151, 162, 720, 833, 836
Sau3AI GATC 7 cut(s) 324, 331, 352, 370, 493, 541, 821
Sau96I GGNCC 3 cut(s) 229, 709, 809
SchI GAGTC 3 cut(s) 392, 422, 679
ScrFI CCNGG 2 cut(s) 227, 265
SduI GDGCHC 1 cut(s) 225
SfaNI GCATC 2 cut(s) 436, 575
SfcI CTRYAG 1 cut(s) 870
SinI GGWCC 2 cut(s) 709, 809
SmiMI CAYNNNNRTG 1 cut(s) 783
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
Sse9I AATT 4 cut(s) 318, 732, 736, 789
SseBI AGGCCT 1 cut(s) 744
SsiI CCGC 7 cut(s) 94, 97, 148, 151, 159, 162, 303
SspMI CTAG 4 cut(s) 483, 620, 654, 695
SstI GAGCTC 1 cut(s) 225
StuI AGGCCT 1 cut(s) 744
StyD4I CCNGG 2 cut(s) 225, 263
StyI CCWWGG 2 cut(s) 701, 798
TaaI ACNGT 2 cut(s) 208, 871
TaiI ACGT 2 cut(s) 286, 379
TaqI TCGA 8 cut(s) 90, 111, 186, 216, 327, 369, 853, 864
TasI AATT 4 cut(s) 318, 732, 736, 789
TauI GCSGC 3 cut(s) 99, 153, 164
TfiI GAWTC 3 cut(s) 8, 366, 850
Tru1I TTAA 5 cut(s) 425, 519, 528, 735, 881
Tru9I TTAA 5 cut(s) 425, 519, 528, 735, 881
TscAI CASTG 2 cut(s) 239, 388
TseI GCWGC 5 cut(s) 63, 66, 719, 832, 835
TspDTI ATGAA 5 cut(s) 402, 701, 783, 801, 863
TspGWI ACGGA 3 cut(s) 31, 378, 566
TspRI CASTG 2 cut(s) 239, 388
VpaK11BI GGWCC 2 cut(s) 709, 809
VspI ATTAAT 1 cut(s) 735
XapI RAATTY 1 cut(s) 789
XmiI GTMKAC 2 cut(s) 90, 246
XspI CTAG 4 cut(s) 483, 620, 654, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.