Rh3AG212600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0012098
Physical Location & Seq
Forward (+)
21445726 .. 21448755
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG212600.1

Sequence Viewer

Length: 699 bp
ATGGAGGACTCGATTCGGAGCTTTTGCAATTCCACTGCTTCATTCTGCAACCACCTCCAGAGCAGCTGCGACGCCCTCAAGACCTCCATCGACCGCCGCCCCATCCCTCTCGCCACCGCCTCCTCCACCTTCATCCACTCCCTCAACCGCCGCGTCTCCACCGCCAGCGCCCACCTCAACCTCCTCGAAACGATGTCGTTCGACACCGTTTCCTTCGAGGAGCTCTTGGGTCACTGCAACGAGGTCTACAAAGACAACCACGCCCGCCTCCTCCACCTCCAACACCGCCTCCAGCCCTTCGGTTACCTCCCCGAAATTGAGATCGATGAGGACGATGTATCGACGCCGATTACTCCAGAGGATGGATTGGATGCACCTGATGACGACGACGATGACTCTTTATTGGACGAGTCATTGAGTTTGAAGAAGCTTGGGCTTTCGGATGCTTCCCTTGCTACTTTAGCATTCCAAGCTAATGCTAGAAATGAGGACCAAGATGTATCTTTTCCTTCGTCGCTCTCGTATGATCCTTCTAAGGAGAGCTCGGGAGCGTCTCCAGATGGATCTCTGTTGGATTTCGGGGAAGTAGAAGATAAAGAAATGATAGCTGTAGCTCCTTTGCAGCTTGTGAAGGTTTGCAGGGATGATTATGAGTGTCTTCCTTCCTACATGAAAAGTCTAGCGCCTTGGGAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.62

Weight (kDa)

4.31

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06590 AT5G06590
fragaria_vesca FvH4_6g21190 FvH4_6g21190
malus_domestica MD12G1047800.v1.1 MD14G1046200.v1.1
prunus_persica Prupe.7G088000_v2.0.a1
pyrus_communis pycom12g04100 pycom14g03870
rosa_chinensis RchiOBHm_Chr3g0477671
rosa_laevigata RLG00000023702
rosa_multiflora Rmu_sc0006187.1_g000003
rosa_roxburghii Rroxscaffold_6G00403770
rosa_rugosa Rorug03G0162600
rosa_samantha Rh3AG212600 Rh3BG246200 Rh3CG239900 Rh3DG239400
rosa_wichuraiana Rw3G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 362
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 153
AciI CCGC 8 cut(s) 94, 97, 117, 148, 151, 162, 265, 286
AclWI GGATC 2 cut(s) 521, 571
AcyI GRCGYC 2 cut(s) 72, 344
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 1 cut(s) 424
AluBI AGCT 9 cut(s) 21, 66, 223, 430, 473, 543, 608, 614, 625
AluI AGCT 9 cut(s) 21, 66, 223, 430, 473, 543, 608, 614, 625
Alw21I GWGCWC 2 cut(s) 225, 545
Alw26I GTCTC 2 cut(s) 160, 558
AlwI GGATC 2 cut(s) 521, 571
Ama87I CYCGRG 1 cut(s) 544
ApeKI GCWGC 3 cut(s) 63, 66, 622
AspLEI GCGC 2 cut(s) 170, 685
AspS9I GGNCC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 1 cut(s) 490
BanII GRGCYC 2 cut(s) 225, 545
BbsI GAAGAC 1 cut(s) 650
Bbv12I GWGCWC 2 cut(s) 225, 545
BbvI GCAGC 3 cut(s) 53, 75, 634
BccI CCATC 4 cut(s) 95, 110, 356, 554
BcoDI GTCTC 2 cut(s) 160, 558
BfaI CTAG 2 cut(s) 480, 680
BfmI CTRYAG 1 cut(s) 609
BfoI RGCGCY 2 cut(s) 171, 686
BisI GCNGC 5 cut(s) 64, 67, 97, 151, 623
BlsI GCNGC 5 cut(s) 65, 68, 98, 152, 624
Bme18I GGWCC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 490
BmsI GCATC 2 cut(s) 361, 433
BpiI GAAGAC 1 cut(s) 650
BpmI CTGGAG 4 cut(s) 41, 275, 339, 540
BpuEI CTTGAG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 2 cut(s) 72, 344
BsaJI CCNNGG 1 cut(s) 686
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 362
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 686
BseGI GGATG 6 cut(s) 102, 132, 367, 376, 448, 649
BseLI CCNNNNNNNGG 1 cut(s) 362
BseRI GAGGAG 4 cut(s) 112, 173, 233, 260
BseXI GCAGC 3 cut(s) 53, 75, 634
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 94
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 2 cut(s) 225, 545
BsiHKCI CYCGRG 1 cut(s) 544
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 2 cut(s) 160, 558
BsmBI CGTCTC 2 cut(s) 160, 558
BsmI GAATGC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 544
Bsp1286I GDGCHC 2 cut(s) 225, 545
Bsp143I GATC 3 cut(s) 321, 526, 563
BspACI CCGC 8 cut(s) 94, 97, 117, 148, 151, 162, 265, 286
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 153
BspPI GGATC 2 cut(s) 521, 571
BssECI CCNNGG 1 cut(s) 686
BssMI GATC 3 cut(s) 321, 526, 563
BssNI GRCGYC 2 cut(s) 72, 344
BssT1I CCWWGG 1 cut(s) 686
Bst4CI ACNGT 1 cut(s) 208
BstACI GRCGYC 2 cut(s) 72, 344
BstC8I GCNNGC 2 cut(s) 166, 265
BstDEI CTNAG 1 cut(s) 534
BstEII GGTNACC 1 cut(s) 302
BstF5I GGATG 6 cut(s) 102, 132, 367, 376, 448, 649
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 2 cut(s) 171, 686
BstHHI GCGC 2 cut(s) 170, 685
BstKTI GATC 3 cut(s) 324, 529, 566
BstMAI GTCTC 2 cut(s) 160, 558
BstMBI GATC 3 cut(s) 321, 526, 563
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 3 cut(s) 452, 461, 470
BstPI GGTNACC 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 609
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 53, 75, 634
BstV2I GAAGAC 1 cut(s) 650
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
Bsu15I ATCGAT 1 cut(s) 324
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 6 cut(s) 102, 132, 367, 376, 448, 649
BtsI GCAGTG 2 cut(s) 33, 232
BtsIMutI CAGTG 2 cut(s) 33, 232
Cac8I GCNNGC 2 cut(s) 166, 265
CfoI GCGC 2 cut(s) 170, 685
Cfr13I GGNCC 1 cut(s) 490
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 4 cut(s) 80, 142, 352, 540
CviAII CATG 1 cut(s) 670
DdeI CTNAG 1 cut(s) 534
DpnI GATC 3 cut(s) 323, 528, 565
DpnII GATC 3 cut(s) 321, 526, 563
Ecl136II GAGCTC 2 cut(s) 223, 543
Eco130I CCWWGG 1 cut(s) 686
Eco24I GRGCYC 2 cut(s) 225, 545
Eco47I GGWCC 1 cut(s) 490
Eco53kI GAGCTC 2 cut(s) 223, 543
Eco88I CYCGRG 1 cut(s) 544
Eco91I GGTNACC 1 cut(s) 302
EcoICRI GAGCTC 2 cut(s) 223, 543
EcoO65I GGTNACC 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 686
EcoT38I GRGCYC 2 cut(s) 225, 545
ErhI CCWWGG 1 cut(s) 686
Esp3I CGTCTC 2 cut(s) 160, 558
FaeI CATG 1 cut(s) 673
FaiI YATR 4 cut(s) 525, 651, 671, 697
FatI CATG 1 cut(s) 669
FauI CCCGC 1 cut(s) 272
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 5 cut(s) 64, 67, 97, 151, 623
FokI GGATG 6 cut(s) 89, 119, 374, 383, 455, 656
FriOI GRGCYC 2 cut(s) 225, 545
Fsp4HI GCNGC 5 cut(s) 64, 67, 97, 151, 623
FspBI CTAG 2 cut(s) 480, 680
GlaI GCGC 2 cut(s) 169, 684
GluI GCNGC 5 cut(s) 64, 67, 97, 151, 623
GsuI CTGGAG 4 cut(s) 41, 275, 339, 540
HaeII RGCGCY 2 cut(s) 171, 686
HgaI GACGC 4 cut(s) 80, 142, 352, 540
HhaI GCGC 2 cut(s) 170, 685
Hin1I GRCGYC 2 cut(s) 72, 344
Hin1II CATG 1 cut(s) 673
Hin6I GCGC 2 cut(s) 168, 683
HinP1I GCGC 2 cut(s) 168, 683
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 4 cut(s) 8, 13, 395, 410
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 18, 442
Hpy188III TCNNGA 5 cut(s) 58, 79, 356, 546, 557
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 5 cut(s) 74, 346, 389, 392, 517
HpyAV CCTTC 7 cut(s) 139, 223, 307, 519, 540, 625, 672
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 6 cut(s) 27, 48, 237, 374, 622, 639
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 461, 470
HpyF3I CTNAG 1 cut(s) 534
Hsp92I GRCGYC 2 cut(s) 72, 344
Hsp92II CATG 1 cut(s) 673
HspAI GCGC 2 cut(s) 168, 683
Kzo9I GATC 3 cut(s) 321, 526, 563
LmnI GCTCC 4 cut(s) 18, 220, 548, 619
LpnPI CCDG 7 cut(s) 71, 178, 305, 369, 390, 570, 625
Lsp1109I GCAGC 3 cut(s) 53, 75, 634
LweI GCATC 2 cut(s) 361, 433
MaeI CTAG 2 cut(s) 480, 680
MaeIII GTNAC 2 cut(s) 230, 302
MalI GATC 3 cut(s) 323, 528, 565
MboI GATC 3 cut(s) 321, 526, 563
MboII GAAGA 3 cut(s) 436, 602, 650
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 2 cut(s) 225, 545
MluCI AATT 2 cut(s) 28, 315
MlyI GAGTC 3 cut(s) 2, 389, 419
MmeI TCCRAC 2 cut(s) 304, 552
MspA1I CMGCKG 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 464
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 452, 461, 470
NdeII GATC 3 cut(s) 321, 526, 563
NlaIII CATG 1 cut(s) 673
NmuCI GTSAC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 518
PctI GAATGC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 13
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 5 cut(s) 65, 68, 98, 152, 624
PleI GAGTC 3 cut(s) 2, 389, 418
PpsI GAGTC 3 cut(s) 2, 389, 418
Psp124BI GAGCTC 2 cut(s) 225, 545
PspEI GGTNACC 1 cut(s) 302
PspPI GGNCC 1 cut(s) 490
PsuI RGATCY 1 cut(s) 563
PvuII CAGCTG 1 cut(s) 66
SacI GAGCTC 2 cut(s) 225, 545
SatI GCNGC 5 cut(s) 64, 67, 97, 151, 623
Sau3AI GATC 3 cut(s) 321, 526, 563
Sau96I GGNCC 1 cut(s) 490
SchI GAGTC 3 cut(s) 2, 389, 419
SduI GDGCHC 2 cut(s) 225, 545
SfaNI GCATC 2 cut(s) 361, 433
SfcI CTRYAG 1 cut(s) 609
SinI GGWCC 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 28, 315
SsiI CCGC 8 cut(s) 94, 97, 117, 148, 151, 162, 265, 286
SspMI CTAG 2 cut(s) 480, 680
SstI GAGCTC 2 cut(s) 225, 545
StyI CCWWGG 1 cut(s) 686
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 7 cut(s) 11, 90, 186, 201, 216, 324, 341
TasI AATT 2 cut(s) 28, 315
TauI GCSGC 2 cut(s) 99, 153
TfiI GAWTC 1 cut(s) 13
TscAI CASTG 2 cut(s) 40, 239
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 3 cut(s) 63, 66, 622
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 30, 121, 686
TspRI CASTG 2 cut(s) 40, 239
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 2 cut(s) 480, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.