Rroxscaffold_6G00403770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012098
Physical Location & Seq
Reverse (-)
26240331 .. 26243140
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403770.1

Sequence Viewer

Length: 885 bp
ATGGAGGACTCGATTCGGAGCTTTTGCAATTCCACTGCTTCATTCTGCAACCACCTCCAGAGCAGCTGCGACGCCCTCAAGACCTCCATCGACCGCCGCCCCATCCCTCTCGCCACCGCCTCCTCCACCTTCATCCACTCCCTCAACAGCCGCGTCTCCACCGCCAGCGCCCACCTCAACCTCCTCGAAACGATGTCGTTCGACACCGTTTCCTTCGAGGAGCTCTTGGGTCACTGCAACGAGGTCTACAAAGACAACCACGCCCGCCTCCTCCACCTCCAACACCGCCTCCAGCCCTTCGGTTACCTCCCTGAAATTGAGATCGATGAGGACGATGTATCGACGCCGATTACTCAAGAGGATGGATTGGATGCACCTGACGACGACGATGACTCTTTATTGGACGAGTCATTGAGTTTGAAGAAGCTTGGGCTTTCGGATGCTTCCCTTGCTACTTTAGCATTCCAAGCTAATGCTAGAAATGAGGACCAAGATGTATCTTTTCCTTTGTCACTCTCGTATGATCCTTCTAAGGAGAGCTCGGGAGCGTCTCCAGATGGATCTCTGTTGGATTTCGGGGAAGTAGAGGATAAAGAAATGATAGCTGTAGCTCCTTTGCAGCTTGTGAAGGTTTGCAGGGATGATTATGAGTGTCTTCCTTCCTACATGAAAAGTCTAGCGCCTTGGGAGGACTTGCTTGCTGCTGTAGAGAAGATCAACTTAGGCCTGAAACAGAAAACAAGCAGAGGAAATTTCTTCCACCAAGATGAAATTCCATCCCTGGGTTTGGGGCCTAAAGCTAGATCTTATTTGCTGCTGCTTGTGCGAATGAACCAATTAGTAGTTGAGACAGTAGATGGTGTGATATCCTACCGAGTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

32.51

Weight (kDa)

4.52

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06590 AT5G06590
fragaria_vesca FvH4_6g21190 FvH4_6g21190
malus_domestica MD12G1047800.v1.1 MD14G1046200.v1.1
prunus_persica Prupe.7G088000_v2.0.a1
pyrus_communis pycom12g04100 pycom14g03870
rosa_chinensis RchiOBHm_Chr3g0477671
rosa_laevigata RLG00000023702
rosa_multiflora Rmu_sc0006187.1_g000003
rosa_roxburghii Rroxscaffold_6G00403770
rosa_rugosa Rorug03G0162600
rosa_samantha Rh3AG212600 Rh3BG246200 Rh3CG239900 Rh3DG239400
rosa_wichuraiana Rw3G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 153
AciI CCGC 7 cut(s) 94, 97, 117, 151, 162, 265, 286
AclWI GGATC 2 cut(s) 518, 568
AcsI RAATTY 2 cut(s) 751, 771
AcyI GRCGYC 2 cut(s) 72, 344
AfiI CCNNNNNNNGG 2 cut(s) 782, 787
AgsI TTSAA 1 cut(s) 421
AjnI CCWGG 1 cut(s) 780
AjuI GAANNNNNNNTTGG 2 cut(s) 756, 788
Alw21I GWGCWC 2 cut(s) 225, 542
Alw26I GTCTC 3 cut(s) 160, 555, 842
AlwI GGATC 2 cut(s) 518, 568
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 2 cut(s) 724, 791
ApeKI GCWGC 6 cut(s) 63, 66, 619, 701, 814, 817
ApoI RAATTY 2 cut(s) 751, 771
AspLEI GCGC 2 cut(s) 170, 682
AspS9I GGNCC 2 cut(s) 487, 791
AvaI CYCGRG 1 cut(s) 541
AvaII GGWCC 1 cut(s) 487
BanII GRGCYC 2 cut(s) 225, 542
BbsI GAAGAC 1 cut(s) 647
Bbv12I GWGCWC 2 cut(s) 225, 542
BbvI GCAGC 6 cut(s) 53, 75, 631, 688, 801, 804
BccI CCATC 6 cut(s) 95, 110, 356, 551, 784, 851
BciT130I CCWGG 1 cut(s) 782
BcoDI GTCTC 3 cut(s) 160, 555, 842
BfaI CTAG 3 cut(s) 477, 677, 801
BfmI CTRYAG 3 cut(s) 606, 705, 881
BfoI RGCGCY 2 cut(s) 171, 683
BglII AGATCT 1 cut(s) 803
BisI GCNGC 8 cut(s) 64, 67, 97, 151, 620, 702, 815, 818
BlsI GCNGC 8 cut(s) 65, 68, 98, 152, 621, 703, 816, 819
Bme1390I CCNGG 1 cut(s) 782
Bme18I GGWCC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 2 cut(s) 487, 791
BmiI GGNNCC 1 cut(s) 792
BmrFI CCNGG 1 cut(s) 782
BmsI GCATC 2 cut(s) 361, 430
BpiI GAAGAC 1 cut(s) 647
BpmI CTGGAG 3 cut(s) 41, 275, 537
BpuEI CTTGAG 2 cut(s) 62, 339
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 2 cut(s) 72, 344
BsaJI CCNNGG 3 cut(s) 683, 780, 781
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 782, 787
BseBI CCWGG 1 cut(s) 782
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 683, 780, 781
BseGI GGATG 7 cut(s) 102, 132, 367, 376, 445, 646, 776
BseLI CCNNNNNNNGG 2 cut(s) 782, 787
BseRI GAGGAG 4 cut(s) 112, 173, 233, 260
BseXI GCAGC 6 cut(s) 53, 75, 631, 688, 801, 804
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 2 cut(s) 726, 793
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 2 cut(s) 225, 542
BsiHKCI CYCGRG 1 cut(s) 541
BslI CCNNNNNNNGG 2 cut(s) 782, 787
BsmAI GTCTC 3 cut(s) 160, 555, 842
BsmBI CGTCTC 2 cut(s) 160, 555
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 2 cut(s) 726, 793
BsoBI CYCGRG 1 cut(s) 541
Bsp1286I GDGCHC 2 cut(s) 225, 542
Bsp143I GATC 5 cut(s) 321, 523, 560, 714, 803
BspACI CCGC 7 cut(s) 94, 97, 117, 151, 162, 265, 286
BspANI GGCC 2 cut(s) 726, 793
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 792
BspPI GGATC 2 cut(s) 518, 568
BssECI CCNNGG 3 cut(s) 683, 780, 781
BssMI GATC 5 cut(s) 321, 523, 560, 714, 803
BssNI GRCGYC 2 cut(s) 72, 344
BssT1I CCWWGG 1 cut(s) 683
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 2 cut(s) 208, 853
BstACI GRCGYC 2 cut(s) 72, 344
BstC8I GCNNGC 3 cut(s) 166, 265, 699
BstDEI CTNAG 2 cut(s) 531, 721
BstEII GGTNACC 1 cut(s) 302
BstF5I GGATG 7 cut(s) 102, 132, 367, 376, 445, 646, 776
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 2 cut(s) 171, 683
BstHHI GCGC 2 cut(s) 170, 682
BstKTI GATC 5 cut(s) 324, 526, 563, 717, 806
BstMAI GTCTC 3 cut(s) 160, 555, 842
BstMBI GATC 5 cut(s) 321, 523, 560, 714, 803
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 4 cut(s) 449, 458, 467, 823
BstNI CCWGG 1 cut(s) 782
BstPI GGTNACC 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 780
BstSFI CTRYAG 3 cut(s) 606, 705, 881
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 6 cut(s) 53, 75, 631, 688, 801, 804
BstV2I GAAGAC 1 cut(s) 647
BstX2I RGATCY 2 cut(s) 560, 803
BstYI RGATCY 2 cut(s) 560, 803
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 2 cut(s) 726, 793
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 7 cut(s) 102, 132, 367, 376, 445, 646, 776
BtsI GCAGTG 2 cut(s) 33, 232
BtsIMutI CAGTG 2 cut(s) 33, 232
Cac8I GCNNGC 3 cut(s) 166, 265, 699
CfoI GCGC 2 cut(s) 170, 682
Cfr13I GGNCC 2 cut(s) 487, 791
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 4 cut(s) 80, 142, 352, 537
CviAII CATG 1 cut(s) 667
DdeI CTNAG 2 cut(s) 531, 721
DpnI GATC 5 cut(s) 323, 525, 562, 716, 805
DpnII GATC 5 cut(s) 321, 523, 560, 714, 803
Ecl136II GAGCTC 2 cut(s) 223, 540
Eco130I CCWWGG 1 cut(s) 683
Eco147I AGGCCT 1 cut(s) 726
Eco24I GRGCYC 2 cut(s) 225, 542
Eco32I GATATC 1 cut(s) 867
Eco47I GGWCC 1 cut(s) 487
Eco53kI GAGCTC 2 cut(s) 223, 540
Eco88I CYCGRG 1 cut(s) 541
Eco91I GGTNACC 1 cut(s) 302
EcoICRI GAGCTC 2 cut(s) 223, 540
EcoO109I RGGNCCY 1 cut(s) 791
EcoO65I GGTNACC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 780
EcoRV GATATC 1 cut(s) 867
EcoT14I CCWWGG 1 cut(s) 683
EcoT38I GRGCYC 2 cut(s) 225, 542
ErhI CCWWGG 1 cut(s) 683
Esp3I CGTCTC 2 cut(s) 160, 555
FaeI CATG 1 cut(s) 670
FaiI YATR 3 cut(s) 522, 648, 668
FalI AAGNNNNNCTT 2 cut(s) 704, 736
FatI CATG 1 cut(s) 666
FauI CCCGC 1 cut(s) 272
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 8 cut(s) 64, 67, 97, 151, 620, 702, 815, 818
FokI GGATG 7 cut(s) 89, 119, 374, 383, 452, 653, 763
FriOI GRGCYC 2 cut(s) 225, 542
Fsp4HI GCNGC 8 cut(s) 64, 67, 97, 151, 620, 702, 815, 818
FspBI CTAG 3 cut(s) 477, 677, 801
GlaI GCGC 2 cut(s) 169, 681
GluI GCNGC 8 cut(s) 64, 67, 97, 151, 620, 702, 815, 818
GsuI CTGGAG 3 cut(s) 41, 275, 537
HaeII RGCGCY 2 cut(s) 171, 683
HaeIII GGCC 2 cut(s) 726, 793
HgaI GACGC 4 cut(s) 80, 142, 352, 537
HhaI GCGC 2 cut(s) 170, 682
Hin1I GRCGYC 2 cut(s) 72, 344
Hin1II CATG 1 cut(s) 670
Hin6I GCGC 2 cut(s) 168, 680
HinP1I GCGC 2 cut(s) 168, 680
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 4 cut(s) 8, 13, 392, 407
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 18, 439
Hpy188III TCNNGA 5 cut(s) 58, 79, 356, 543, 554
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 4 cut(s) 74, 346, 386, 389
HpyAV CCTTC 6 cut(s) 139, 223, 307, 537, 622, 669
HpyCH4III ACNGT 2 cut(s) 208, 853
HpyCH4V TGCA 6 cut(s) 27, 48, 237, 374, 619, 636
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 458, 467, 823
HpyF3I CTNAG 2 cut(s) 531, 721
Hsp92I GRCGYC 2 cut(s) 72, 344
Hsp92II CATG 1 cut(s) 670
HspAI GCGC 2 cut(s) 168, 680
Kzo9I GATC 5 cut(s) 321, 523, 560, 714, 803
LmnI GCTCC 4 cut(s) 18, 220, 545, 616
Lsp1109I GCAGC 6 cut(s) 53, 75, 631, 688, 801, 804
LweI GCATC 2 cut(s) 361, 430
MaeI CTAG 3 cut(s) 477, 677, 801
MaeIII GTNAC 3 cut(s) 230, 302, 510
MalI GATC 5 cut(s) 323, 525, 562, 716, 805
MboI GATC 5 cut(s) 321, 523, 560, 714, 803
MboII GAAGA 4 cut(s) 433, 647, 724, 748
MflI RGATCY 2 cut(s) 560, 803
MhlI GDGCHC 2 cut(s) 225, 542
MluCI AATT 5 cut(s) 28, 315, 751, 771, 836
MlyI GAGTC 3 cut(s) 2, 386, 416
MmeI TCCRAC 2 cut(s) 304, 549
MslI CAYNNNNRTG 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 782
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 1 cut(s) 782
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 449, 458, 467, 823
NdeII GATC 5 cut(s) 321, 523, 560, 714, 803
NlaIII CATG 1 cut(s) 670
NlaIV GGNNCC 1 cut(s) 792
NmuCI GTSAC 2 cut(s) 230, 510
PasI CCCWGGG 1 cut(s) 781
PceI AGGCCT 1 cut(s) 726
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 8 cut(s) 65, 68, 98, 152, 621, 703, 816, 819
PleI GAGTC 3 cut(s) 2, 386, 415
PpsI GAGTC 3 cut(s) 2, 386, 415
Psp124BI GAGCTC 2 cut(s) 225, 542
Psp6I CCWGG 1 cut(s) 780
PspEI GGTNACC 1 cut(s) 302
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 1 cut(s) 792
PspPI GGNCC 2 cut(s) 487, 791
PsuI RGATCY 2 cut(s) 560, 803
PvuII CAGCTG 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 765
SacI GAGCTC 2 cut(s) 225, 542
SatI GCNGC 8 cut(s) 64, 67, 97, 151, 620, 702, 815, 818
Sau3AI GATC 5 cut(s) 321, 523, 560, 714, 803
Sau96I GGNCC 2 cut(s) 487, 791
SchI GAGTC 3 cut(s) 2, 386, 416
ScrFI CCNGG 1 cut(s) 782
SduI GDGCHC 2 cut(s) 225, 542
SfaNI GCATC 2 cut(s) 361, 430
SfcI CTRYAG 3 cut(s) 606, 705, 881
SinI GGWCC 1 cut(s) 487
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 2 cut(s) 77, 354
SmoI CTYRAG 2 cut(s) 77, 354
Sse9I AATT 5 cut(s) 28, 315, 751, 771, 836
SseBI AGGCCT 1 cut(s) 726
SsiI CCGC 7 cut(s) 94, 97, 117, 151, 162, 265, 286
SspMI CTAG 3 cut(s) 477, 677, 801
SstI GAGCTC 2 cut(s) 225, 542
StuI AGGCCT 1 cut(s) 726
StyD4I CCNGG 1 cut(s) 780
StyI CCWWGG 1 cut(s) 683
TaaI ACNGT 2 cut(s) 208, 853
TaqI TCGA 7 cut(s) 11, 90, 186, 201, 216, 324, 341
TasI AATT 5 cut(s) 28, 315, 751, 771, 836
TauI GCSGC 2 cut(s) 99, 153
TfiI GAWTC 1 cut(s) 13
TscAI CASTG 2 cut(s) 40, 239
TseFI GTSAC 2 cut(s) 230, 510
TseI GCWGC 6 cut(s) 63, 66, 619, 701, 814, 817
Tsp45I GTSAC 2 cut(s) 230, 510
TspDTI ATGAA 5 cut(s) 30, 121, 683, 783, 845
TspRI CASTG 2 cut(s) 40, 239
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 2 cut(s) 751, 771
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 3 cut(s) 477, 677, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.