RLG00000023702

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012098
Physical Location & Seq
Reverse (-)
27235080 .. 27239898
4819 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023702

Sequence Viewer

Length: 1032 bp
ATGGAGGAATCGATTCGGAGCTTTTGCAATTCCATTGCTTCATTCTGCAACCACCTCCAGAGCAGCTGCGACGCCCTCAAGACCTCCATCGACCGCCGCCCCATCCCTCTCGCCACCGCCTCCTCCACCTTCATCCACTCCCTCAACCGCCGCGTCTCCACCGCCAGCGCCCACCTCAACCTCCTCGAAACGATGTCGTTCGACACCGTTTCCTTCGAGGAGCTCTTGGGTCACTGCAACGAGGTCTACAAAGACAACCACACCCGCCTCCTCCACCTCCAACACCGCCTCCACCCCTTCGGTTACCTCCCCGAAATTGAGATCGATGAGGACGACGTATCGACGCCGATTACTCCAGAGGATGGATTGGATGCACCTGATGACGACGACGATGACTCTTTATTGGACGAGTCATTGAGTTTGAAGAAGCTTGGGCTTTCGGATGCTTCCCTTGCTACTTTAGCATTCCAAGCTAATGCTAGAAATGAGGACCAAGATGTATCTTTTCCTTCGTCGCTCTCGTATGATCCTTCTAAGGAGAGCTTGGGAGCGTCTCCGGATGGATCTCTGTTGGATTTCGGGGAAGTAGAGGATAAAGAAATGATAGCTGTAGCTCCTTTGCAGCTTGTGAAGGTTTGCAGGGATGATTATGAGTGTCTTCCTTCCTACATGAAAAGTCTAGCGCCTTGGGAGGACTTGCTTGCTGCTGTAGAGAAGATCAACTCAGGCCTGAAACAGAAAACAAGCAGAGGAAATTTCTTCCACCAAGATGAAATTCCATCCCTGGGTTTGGGGCCTAAAGCTAGATCTTATTTGCTGCTGCTTGTGCGAATGAACCAATTAGTAGTTGAGACAGTAGATGGTGTGATATCCTACCGAAATGTGGCTACAATCATGATAGGACCAGCTGCTGCTGTGGAGAAGATCAACACAGGCCTAAACAGAAAGCAAGTGGAGGGACAAGTTGCTAAGAACAACAGCACTCAGCTGCTGAGTGCTGATAGTGCCATCCATGCTTTATCACAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

37.66

Weight (kDa)

4.71

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06590 AT5G06590
fragaria_vesca FvH4_6g21190 FvH4_6g21190
malus_domestica MD12G1047800.v1.1 MD14G1046200.v1.1
prunus_persica Prupe.7G088000_v2.0.a1
pyrus_communis pycom12g04100 pycom14g03870
rosa_chinensis RchiOBHm_Chr3g0477671
rosa_laevigata RLG00000023702
rosa_multiflora Rmu_sc0006187.1_g000003
rosa_roxburghii Rroxscaffold_6G00403770
rosa_rugosa Rorug03G0162600
rosa_samantha Rh3AG212600 Rh3BG246200 Rh3CG239900 Rh3DG239400
rosa_wichuraiana Rw3G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 362
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 153
AccIII TCCGGA 1 cut(s) 556
AciI CCGC 8 cut(s) 94, 97, 117, 148, 151, 162, 265, 286
AclWI GGATC 2 cut(s) 521, 571
AcsI RAATTY 2 cut(s) 754, 774
AcyI GRCGYC 2 cut(s) 72, 344
AfiI CCNNNNNNNGG 4 cut(s) 362, 785, 790, 883
AgsI TTSAA 1 cut(s) 424
AjnI CCWGG 1 cut(s) 783
AjuI GAANNNNNNNTTGG 2 cut(s) 759, 791
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 3 cut(s) 160, 558, 845
AlwI GGATC 2 cut(s) 521, 571
AlwNI CAGNNNCTG 2 cut(s) 911, 991
Aor13HI TCCGGA 1 cut(s) 556
AoxI GGCC 3 cut(s) 727, 794, 934
ApeKI GCWGC 9 cut(s) 63, 66, 622, 704, 817, 820, 908, 911, 988
ApoI RAATTY 2 cut(s) 754, 774
Asp700I GAANNNNTTC 1 cut(s) 12
AspLEI GCGC 2 cut(s) 170, 685
AspS9I GGNCC 3 cut(s) 490, 794, 902
AvaII GGWCC 2 cut(s) 490, 902
BanII GRGCYC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 650
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 9 cut(s) 53, 75, 634, 691, 804, 807, 895, 898, 975
BccI CCATC 7 cut(s) 95, 110, 356, 554, 787, 854, 1016
BciT130I CCWGG 1 cut(s) 785
BcoDI GTCTC 3 cut(s) 160, 558, 845
BfaI CTAG 3 cut(s) 480, 680, 804
BfmI CTRYAG 2 cut(s) 609, 708
BfoI RGCGCY 2 cut(s) 171, 686
BglII AGATCT 1 cut(s) 806
Bme1390I CCNGG 1 cut(s) 785
Bme18I GGWCC 2 cut(s) 490, 902
BmgT120I GGNCC 3 cut(s) 490, 794, 902
BmiI GGNNCC 1 cut(s) 795
BmrFI CCNGG 1 cut(s) 785
BmsI GCATC 2 cut(s) 361, 433
BpiI GAAGAC 1 cut(s) 650
BpmI CTGGAG 2 cut(s) 41, 339
BpuEI CTTGAG 1 cut(s) 62
Bsa29I ATCGAT 2 cut(s) 11, 324
BsaHI GRCGYC 2 cut(s) 72, 344
BsaJI CCNNGG 3 cut(s) 686, 783, 784
BsaWI WCCGGW 1 cut(s) 556
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 4 cut(s) 362, 785, 790, 883
Bse3DI GCAATG 1 cut(s) 33
BseAI TCCGGA 1 cut(s) 556
BseBI CCWGG 1 cut(s) 785
BseCI ATCGAT 2 cut(s) 11, 324
BseDI CCNNGG 3 cut(s) 686, 783, 784
BseGI GGATG 9 cut(s) 102, 132, 367, 376, 448, 565, 649, 779, 1008
BseLI CCNNNNNNNGG 4 cut(s) 362, 785, 790, 883
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 738, 983, 998
BseRI GAGGAG 4 cut(s) 112, 173, 233, 260
BseXI GCAGC 9 cut(s) 53, 75, 634, 691, 804, 807, 895, 898, 975
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 3 cut(s) 729, 796, 936
BshVI ATCGAT 2 cut(s) 11, 324
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 1 cut(s) 557
BslFI GGGAC 1 cut(s) 972
BslI CCNNNNNNNGG 4 cut(s) 362, 785, 790, 883
BsmAI GTCTC 3 cut(s) 160, 558, 845
BsmBI CGTCTC 2 cut(s) 160, 558
BsmFI GGGAC 1 cut(s) 972
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 3 cut(s) 729, 796, 936
Bsp1286I GDGCHC 1 cut(s) 225
Bsp13I TCCGGA 1 cut(s) 556
Bsp143I GATC 6 cut(s) 321, 526, 563, 717, 806, 924
BspACI CCGC 8 cut(s) 94, 97, 117, 148, 151, 162, 265, 286
BspANI GGCC 3 cut(s) 729, 796, 936
BspCNI CTCAG 3 cut(s) 737, 984, 997
BspDI ATCGAT 2 cut(s) 11, 324
BspEI TCCGGA 1 cut(s) 556
BspFNI CGCG 1 cut(s) 153
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 1 cut(s) 795
BspPI GGATC 2 cut(s) 521, 571
BsrDI GCAATG 1 cut(s) 33
BssECI CCNNGG 3 cut(s) 686, 783, 784
BssMI GATC 6 cut(s) 321, 526, 563, 717, 806, 924
BssNI GRCGYC 2 cut(s) 72, 344
BssT1I CCWWGG 1 cut(s) 686
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 2 cut(s) 208, 856
BstACI GRCGYC 2 cut(s) 72, 344
BstC8I GCNNGC 2 cut(s) 166, 702
BstDEI CTNAG 5 cut(s) 534, 724, 969, 984, 992
BstEII GGTNACC 1 cut(s) 302
BstF5I GGATG 9 cut(s) 102, 132, 367, 376, 448, 565, 649, 779, 1008
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 2 cut(s) 171, 686
BstHHI GCGC 2 cut(s) 170, 685
BstKTI GATC 6 cut(s) 324, 529, 566, 720, 809, 927
BstMAI GTCTC 3 cut(s) 160, 558, 845
BstMBI GATC 6 cut(s) 321, 526, 563, 717, 806, 924
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 6 cut(s) 452, 461, 470, 826, 1004, 1013
BstNI CCWGG 1 cut(s) 785
BstPI GGTNACC 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 783
BstSFI CTRYAG 2 cut(s) 609, 708
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 9 cut(s) 53, 75, 634, 691, 804, 807, 895, 898, 975
BstV2I GAAGAC 1 cut(s) 650
BstX2I RGATCY 2 cut(s) 563, 806
BstYI RGATCY 2 cut(s) 563, 806
Bsu15I ATCGAT 2 cut(s) 11, 324
BsuRI GGCC 3 cut(s) 729, 796, 936
BsuTUI ATCGAT 2 cut(s) 11, 324
BtsCI GGATG 9 cut(s) 102, 132, 367, 376, 448, 565, 649, 779, 1008
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 166, 702
CaiI CAGNNNCTG 2 cut(s) 911, 991
CciI TCATGA 1 cut(s) 894
CfoI GCGC 2 cut(s) 170, 685
Cfr13I GGNCC 3 cut(s) 490, 794, 902
ClaI ATCGAT 2 cut(s) 11, 324
CseI GACGC 4 cut(s) 80, 142, 352, 540
CviAII CATG 3 cut(s) 670, 895, 1013
DdeI CTNAG 5 cut(s) 534, 724, 969, 984, 992
DpnI GATC 6 cut(s) 323, 528, 565, 719, 808, 926
DpnII GATC 6 cut(s) 321, 526, 563, 717, 806, 924
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 686
Eco147I AGGCCT 2 cut(s) 729, 936
Eco24I GRGCYC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 870
Eco47I GGWCC 2 cut(s) 490, 902
Eco53kI GAGCTC 1 cut(s) 223
Eco91I GGTNACC 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 794
EcoO65I GGTNACC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 783
EcoRV GATATC 1 cut(s) 870
EcoT14I CCWWGG 1 cut(s) 686
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 686
Esp3I CGTCTC 2 cut(s) 160, 558
FaeI CATG 3 cut(s) 673, 898, 1016
FaiI YATR 5 cut(s) 525, 651, 671, 896, 1014
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FaqI GGGAC 1 cut(s) 972
FatI CATG 3 cut(s) 669, 894, 1012
FauI CCCGC 1 cut(s) 272
FblI GTMKAC 1 cut(s) 246
FokI GGATG 9 cut(s) 89, 119, 374, 383, 455, 572, 656, 766, 995
FriOI GRGCYC 1 cut(s) 225
FspBI CTAG 3 cut(s) 480, 680, 804
GlaI GCGC 2 cut(s) 169, 684
GsuI CTGGAG 2 cut(s) 41, 339
HaeII RGCGCY 2 cut(s) 171, 686
HaeIII GGCC 3 cut(s) 729, 796, 936
HapII CCGG 1 cut(s) 557
HgaI GACGC 4 cut(s) 80, 142, 352, 540
HhaI GCGC 2 cut(s) 170, 685
Hin1I GRCGYC 2 cut(s) 72, 344
Hin1II CATG 3 cut(s) 673, 898, 1016
Hin6I GCGC 2 cut(s) 168, 683
HinP1I GCGC 2 cut(s) 168, 683
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 4 cut(s) 8, 13, 395, 410
HpaII CCGG 1 cut(s) 557
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 18, 442
Hpy188III TCNNGA 5 cut(s) 58, 79, 356, 557, 895
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 6 cut(s) 74, 338, 346, 389, 392, 517
HpyAV CCTTC 7 cut(s) 139, 223, 307, 519, 540, 625, 672
HpyCH4III ACNGT 2 cut(s) 208, 856
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 6 cut(s) 27, 48, 237, 374, 622, 639
HpyF10VI GCNNNNNNNGC 6 cut(s) 452, 461, 470, 826, 1004, 1013
HpyF3I CTNAG 5 cut(s) 534, 724, 969, 984, 992
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 2 cut(s) 72, 344
Hsp92II CATG 3 cut(s) 673, 898, 1016
HspAI GCGC 2 cut(s) 168, 683
Kpn2I TCCGGA 1 cut(s) 556
Kzo9I GATC 6 cut(s) 321, 526, 563, 717, 806, 924
LmnI GCTCC 4 cut(s) 18, 220, 548, 619
Lsp1109I GCAGC 9 cut(s) 53, 75, 634, 691, 804, 807, 895, 898, 975
LweI GCATC 2 cut(s) 361, 433
MaeI CTAG 3 cut(s) 480, 680, 804
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 230, 302
MalI GATC 6 cut(s) 323, 528, 565, 719, 808, 926
MboI GATC 6 cut(s) 321, 526, 563, 717, 806, 924
MboII GAAGA 5 cut(s) 436, 650, 727, 751, 934
MflI RGATCY 2 cut(s) 563, 806
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 5 cut(s) 28, 315, 754, 774, 839
MlyI GAGTC 2 cut(s) 389, 419
MmeI TCCRAC 2 cut(s) 304, 552
MroI TCCGGA 1 cut(s) 556
MroXI GAANNNNTTC 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 768
MspA1I CMGCKG 3 cut(s) 66, 908, 988
MspI CCGG 1 cut(s) 557
MspR9I CCNGG 1 cut(s) 785
Mva1269I GAATGC 1 cut(s) 464
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 6 cut(s) 452, 461, 470, 826, 1004, 1013
NdeII GATC 6 cut(s) 321, 526, 563, 717, 806, 924
NlaIII CATG 3 cut(s) 673, 898, 1016
NlaIV GGNNCC 1 cut(s) 795
NmuCI GTSAC 1 cut(s) 230
PagI TCATGA 1 cut(s) 894
PasI CCCWGGG 1 cut(s) 784
PceI AGGCCT 2 cut(s) 729, 936
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 518
PctI GAATGC 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 8, 13
PflMI CCANNNNNTGG 1 cut(s) 362
PleI GAGTC 2 cut(s) 389, 418
PpsI GAGTC 2 cut(s) 389, 418
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 783
PspEI GGTNACC 1 cut(s) 302
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 1 cut(s) 795
PspPI GGNCC 3 cut(s) 490, 794, 902
PstNI CAGNNNCTG 2 cut(s) 911, 991
PsuI RGATCY 2 cut(s) 563, 806
PvuII CAGCTG 3 cut(s) 66, 908, 988
RseI CAYNNNNRTG 1 cut(s) 768
SacI GAGCTC 1 cut(s) 225
Sau3AI GATC 6 cut(s) 321, 526, 563, 717, 806, 924
Sau96I GGNCC 3 cut(s) 490, 794, 902
SchI GAGTC 2 cut(s) 389, 419
ScrFI CCNGG 1 cut(s) 785
SduI GDGCHC 1 cut(s) 225
SfaNI GCATC 2 cut(s) 361, 433
SfcI CTRYAG 2 cut(s) 609, 708
SinI GGWCC 2 cut(s) 490, 902
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 5 cut(s) 28, 315, 754, 774, 839
SseBI AGGCCT 2 cut(s) 729, 936
SsiI CCGC 8 cut(s) 94, 97, 117, 148, 151, 162, 265, 286
SspMI CTAG 3 cut(s) 480, 680, 804
SstI GAGCTC 1 cut(s) 225
StuI AGGCCT 2 cut(s) 729, 936
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 1 cut(s) 686
TaaI ACNGT 2 cut(s) 208, 856
TaiI ACGT 1 cut(s) 339
TaqI TCGA 7 cut(s) 11, 90, 186, 201, 216, 324, 341
TasI AATT 5 cut(s) 28, 315, 754, 774, 839
TauI GCSGC 2 cut(s) 99, 153
TfiI GAWTC 2 cut(s) 8, 13
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 9 cut(s) 63, 66, 622, 704, 817, 820, 908, 911, 988
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 5 cut(s) 30, 121, 686, 786, 848
TspRI CASTG 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 2 cut(s) 490, 902
XapI RAATTY 2 cut(s) 754, 774
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 3 cut(s) 480, 680, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.