Rh3DG239400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0012098
Physical Location & Seq
Forward (+)
23029893 .. 23032922
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG239400.1

Sequence Viewer

Length: 888 bp
ATGGAGGACTCGATTCGGAGCTTTTGCAATTCCACTGCTTCATTCTGCAACCACCTCCAGAGCAGCTGCGACGCCCTCAAGACCTCCATCGACCGCCGCCCCATCCCTCTCGCCACCGCCTCCTCCACCTTCATCCACTCCCTCAACCGCCGCGTCTCCACCGCCAGCGCCCACCTCAACCTCCTCGAAACGATGTCGTTCGACACCGTTTCCTTCGAGGAGCTCTTGGGTCACTGCAACGAGGTCTACAAAGACAACCACGCCCGCCTCCTCCACCTCCAACACCGCCTCCAGCCCTTCGGTTACCTCCCCGAAATTGAGATCGATGAGGACGATGTATCGACGCCGATTACTCCAGAGGATGGATTGGATGCACCTGATGACGACGACGATGACTCTTTATTGGACGAGTCATTGAGTTTGAAGAAGCTTGGGCTTTCGGATGCTTCCCTTGCTACTTTAGCATTCCAAGCTAATGCTAGAAATGAGGACCAAGATGTATCTTTTCCTTCGTCGCTCTCGTATGATCCTTCTAAGGAGAGCTCGGGAGCGTCTCCAGATGGATCTCTGTTGGATTTCGGGGAAGTAGAAGATAAAGAAATGATAGCTGTAGCTCCTTTGCAGCTTGTGAAGGTTTGCAGGGATGATTATGAGTGTCTTCCTTCCTACATGAAAAGTCTAGCGCCTTGGGAGGACTTGCTTGCGGCTGTAGAGAAGATCAACTCAGGCCTGAAACAGAAAACAAGCAGAGGAAATTTCTTCCACCAAGATGAAATTCCATCCCTGGGTTTGGGGCCTAAAGCTAGATCTTATTTGCTGCTGCTTGTGCGAATGAACCAATTAGTAGTTGAGACAGTAGATGGTGTGATATCCTACCGAGTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

32.62

Weight (kDa)

4.53

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012098)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06590 AT5G06590
fragaria_vesca FvH4_6g21190 FvH4_6g21190
malus_domestica MD12G1047800.v1.1 MD14G1046200.v1.1
prunus_persica Prupe.7G088000_v2.0.a1
pyrus_communis pycom12g04100 pycom14g03870
rosa_chinensis RchiOBHm_Chr3g0477671
rosa_laevigata RLG00000023702
rosa_multiflora Rmu_sc0006187.1_g000003
rosa_roxburghii Rroxscaffold_6G00403770
rosa_rugosa Rorug03G0162600
rosa_samantha Rh3AG212600 Rh3BG246200 Rh3CG239900 Rh3DG239400
rosa_wichuraiana Rw3G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 362
AccI GTMKAC 1 cut(s) 246
AccII CGCG 1 cut(s) 153
AciI CCGC 9 cut(s) 94, 97, 117, 148, 151, 162, 265, 286, 704
AclWI GGATC 2 cut(s) 521, 571
AcsI RAATTY 2 cut(s) 754, 774
AcyI GRCGYC 2 cut(s) 72, 344
AfiI CCNNNNNNNGG 3 cut(s) 362, 785, 790
AgsI TTSAA 1 cut(s) 424
AjnI CCWGG 1 cut(s) 783
AjuI GAANNNNNNNTTGG 2 cut(s) 759, 791
Alw21I GWGCWC 2 cut(s) 225, 545
Alw26I GTCTC 3 cut(s) 160, 558, 845
AlwI GGATC 2 cut(s) 521, 571
Ama87I CYCGRG 1 cut(s) 544
AoxI GGCC 2 cut(s) 727, 794
ApeKI GCWGC 5 cut(s) 63, 66, 622, 817, 820
ApoI RAATTY 2 cut(s) 754, 774
AspLEI GCGC 2 cut(s) 170, 685
AspS9I GGNCC 2 cut(s) 490, 794
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 1 cut(s) 490
BanII GRGCYC 2 cut(s) 225, 545
BbsI GAAGAC 1 cut(s) 650
Bbv12I GWGCWC 2 cut(s) 225, 545
BbvI GCAGC 5 cut(s) 53, 75, 634, 804, 807
BccI CCATC 6 cut(s) 95, 110, 356, 554, 787, 854
BciT130I CCWGG 1 cut(s) 785
BcoDI GTCTC 3 cut(s) 160, 558, 845
BfaI CTAG 3 cut(s) 480, 680, 804
BfmI CTRYAG 3 cut(s) 609, 708, 884
BfoI RGCGCY 2 cut(s) 171, 686
BglII AGATCT 1 cut(s) 806
BisI GCNGC 8 cut(s) 64, 67, 97, 151, 623, 705, 818, 821
BlsI GCNGC 8 cut(s) 65, 68, 98, 152, 624, 706, 819, 822
Bme1390I CCNGG 1 cut(s) 785
Bme18I GGWCC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 544
BmgT120I GGNCC 2 cut(s) 490, 794
BmiI GGNNCC 1 cut(s) 795
BmrFI CCNGG 1 cut(s) 785
BmsI GCATC 2 cut(s) 361, 433
BpiI GAAGAC 1 cut(s) 650
BpmI CTGGAG 4 cut(s) 41, 275, 339, 540
BpuEI CTTGAG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 2 cut(s) 72, 344
BsaJI CCNNGG 3 cut(s) 686, 783, 784
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 785, 790
BseBI CCWGG 1 cut(s) 785
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 686, 783, 784
BseGI GGATG 7 cut(s) 102, 132, 367, 376, 448, 649, 779
BseLI CCNNNNNNNGG 3 cut(s) 362, 785, 790
BseMII CTCAG 1 cut(s) 738
BseRI GAGGAG 4 cut(s) 112, 173, 233, 260
BseXI GCAGC 5 cut(s) 53, 75, 634, 804, 807
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 2 cut(s) 729, 796
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 2 cut(s) 225, 545
BsiHKCI CYCGRG 1 cut(s) 544
BslI CCNNNNNNNGG 3 cut(s) 362, 785, 790
BsmAI GTCTC 3 cut(s) 160, 558, 845
BsmBI CGTCTC 2 cut(s) 160, 558
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 2 cut(s) 729, 796
BsoBI CYCGRG 1 cut(s) 544
Bsp1286I GDGCHC 2 cut(s) 225, 545
Bsp143I GATC 5 cut(s) 321, 526, 563, 717, 806
BspACI CCGC 9 cut(s) 94, 97, 117, 148, 151, 162, 265, 286, 704
BspANI GGCC 2 cut(s) 729, 796
BspCNI CTCAG 1 cut(s) 737
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 795
BspPI GGATC 2 cut(s) 521, 571
BssECI CCNNGG 3 cut(s) 686, 783, 784
BssMI GATC 5 cut(s) 321, 526, 563, 717, 806
BssNI GRCGYC 2 cut(s) 72, 344
BssT1I CCWWGG 1 cut(s) 686
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 2 cut(s) 208, 856
BstACI GRCGYC 2 cut(s) 72, 344
BstC8I GCNNGC 3 cut(s) 166, 265, 702
BstDEI CTNAG 2 cut(s) 534, 724
BstEII GGTNACC 1 cut(s) 302
BstF5I GGATG 7 cut(s) 102, 132, 367, 376, 448, 649, 779
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 2 cut(s) 171, 686
BstHHI GCGC 2 cut(s) 170, 685
BstKTI GATC 5 cut(s) 324, 529, 566, 720, 809
BstMAI GTCTC 3 cut(s) 160, 558, 845
BstMBI GATC 5 cut(s) 321, 526, 563, 717, 806
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 4 cut(s) 452, 461, 470, 826
BstNI CCWGG 1 cut(s) 785
BstPI GGTNACC 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 783
BstSFI CTRYAG 3 cut(s) 609, 708, 884
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 5 cut(s) 53, 75, 634, 804, 807
BstV2I GAAGAC 1 cut(s) 650
BstX2I RGATCY 2 cut(s) 563, 806
BstYI RGATCY 2 cut(s) 563, 806
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 2 cut(s) 729, 796
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 7 cut(s) 102, 132, 367, 376, 448, 649, 779
BtsI GCAGTG 2 cut(s) 33, 232
BtsIMutI CAGTG 2 cut(s) 33, 232
Cac8I GCNNGC 3 cut(s) 166, 265, 702
CfoI GCGC 2 cut(s) 170, 685
Cfr13I GGNCC 2 cut(s) 490, 794
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 4 cut(s) 80, 142, 352, 540
CviAII CATG 1 cut(s) 670
DdeI CTNAG 2 cut(s) 534, 724
DpnI GATC 5 cut(s) 323, 528, 565, 719, 808
DpnII GATC 5 cut(s) 321, 526, 563, 717, 806
Ecl136II GAGCTC 2 cut(s) 223, 543
Eco130I CCWWGG 1 cut(s) 686
Eco147I AGGCCT 1 cut(s) 729
Eco24I GRGCYC 2 cut(s) 225, 545
Eco32I GATATC 1 cut(s) 870
Eco47I GGWCC 1 cut(s) 490
Eco53kI GAGCTC 2 cut(s) 223, 543
Eco88I CYCGRG 1 cut(s) 544
Eco91I GGTNACC 1 cut(s) 302
EcoICRI GAGCTC 2 cut(s) 223, 543
EcoO109I RGGNCCY 1 cut(s) 794
EcoO65I GGTNACC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 783
EcoRV GATATC 1 cut(s) 870
EcoT14I CCWWGG 1 cut(s) 686
EcoT38I GRGCYC 2 cut(s) 225, 545
ErhI CCWWGG 1 cut(s) 686
Esp3I CGTCTC 2 cut(s) 160, 558
FaeI CATG 1 cut(s) 673
FaiI YATR 3 cut(s) 525, 651, 671
FatI CATG 1 cut(s) 669
FauI CCCGC 1 cut(s) 272
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 8 cut(s) 64, 67, 97, 151, 623, 705, 818, 821
FokI GGATG 7 cut(s) 89, 119, 374, 383, 455, 656, 766
FriOI GRGCYC 2 cut(s) 225, 545
Fsp4HI GCNGC 8 cut(s) 64, 67, 97, 151, 623, 705, 818, 821
FspBI CTAG 3 cut(s) 480, 680, 804
GlaI GCGC 2 cut(s) 169, 684
GluI GCNGC 8 cut(s) 64, 67, 97, 151, 623, 705, 818, 821
GsuI CTGGAG 4 cut(s) 41, 275, 339, 540
HaeII RGCGCY 2 cut(s) 171, 686
HaeIII GGCC 2 cut(s) 729, 796
HgaI GACGC 4 cut(s) 80, 142, 352, 540
HhaI GCGC 2 cut(s) 170, 685
Hin1I GRCGYC 2 cut(s) 72, 344
Hin1II CATG 1 cut(s) 673
Hin6I GCGC 2 cut(s) 168, 683
HinP1I GCGC 2 cut(s) 168, 683
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 4 cut(s) 8, 13, 395, 410
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 18, 442
Hpy188III TCNNGA 5 cut(s) 58, 79, 356, 546, 557
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 5 cut(s) 74, 346, 389, 392, 517
HpyAV CCTTC 7 cut(s) 139, 223, 307, 519, 540, 625, 672
HpyCH4III ACNGT 2 cut(s) 208, 856
HpyCH4V TGCA 6 cut(s) 27, 48, 237, 374, 622, 639
HpyF10VI GCNNNNNNNGC 4 cut(s) 452, 461, 470, 826
HpyF3I CTNAG 2 cut(s) 534, 724
Hsp92I GRCGYC 2 cut(s) 72, 344
Hsp92II CATG 1 cut(s) 673
HspAI GCGC 2 cut(s) 168, 683
Kzo9I GATC 5 cut(s) 321, 526, 563, 717, 806
LmnI GCTCC 4 cut(s) 18, 220, 548, 619
Lsp1109I GCAGC 5 cut(s) 53, 75, 634, 804, 807
LweI GCATC 2 cut(s) 361, 433
MaeI CTAG 3 cut(s) 480, 680, 804
MaeIII GTNAC 2 cut(s) 230, 302
MalI GATC 5 cut(s) 323, 528, 565, 719, 808
MboI GATC 5 cut(s) 321, 526, 563, 717, 806
MboII GAAGA 5 cut(s) 436, 602, 650, 727, 751
MflI RGATCY 2 cut(s) 563, 806
MhlI GDGCHC 2 cut(s) 225, 545
MluCI AATT 5 cut(s) 28, 315, 754, 774, 839
MlyI GAGTC 3 cut(s) 2, 389, 419
MmeI TCCRAC 2 cut(s) 304, 552
MslI CAYNNNNRTG 1 cut(s) 768
MspA1I CMGCKG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 785
Mva1269I GAATGC 1 cut(s) 464
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 452, 461, 470, 826
NdeII GATC 5 cut(s) 321, 526, 563, 717, 806
NlaIII CATG 1 cut(s) 673
NlaIV GGNNCC 1 cut(s) 795
NmuCI GTSAC 1 cut(s) 230
PasI CCCWGGG 1 cut(s) 784
PceI AGGCCT 1 cut(s) 729
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 518
PctI GAATGC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 13
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 8 cut(s) 65, 68, 98, 152, 624, 706, 819, 822
PleI GAGTC 3 cut(s) 2, 389, 418
PpsI GAGTC 3 cut(s) 2, 389, 418
Psp124BI GAGCTC 2 cut(s) 225, 545
Psp6I CCWGG 1 cut(s) 783
PspEI GGTNACC 1 cut(s) 302
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 1 cut(s) 795
PspPI GGNCC 2 cut(s) 490, 794
PsuI RGATCY 2 cut(s) 563, 806
PvuII CAGCTG 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 768
SacI GAGCTC 2 cut(s) 225, 545
SatI GCNGC 8 cut(s) 64, 67, 97, 151, 623, 705, 818, 821
Sau3AI GATC 5 cut(s) 321, 526, 563, 717, 806
Sau96I GGNCC 2 cut(s) 490, 794
SchI GAGTC 3 cut(s) 2, 389, 419
ScrFI CCNGG 1 cut(s) 785
SduI GDGCHC 2 cut(s) 225, 545
SfaNI GCATC 2 cut(s) 361, 433
SfcI CTRYAG 3 cut(s) 609, 708, 884
SinI GGWCC 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 5 cut(s) 28, 315, 754, 774, 839
SseBI AGGCCT 1 cut(s) 729
SsiI CCGC 9 cut(s) 94, 97, 117, 148, 151, 162, 265, 286, 704
SspMI CTAG 3 cut(s) 480, 680, 804
SstI GAGCTC 2 cut(s) 225, 545
StuI AGGCCT 1 cut(s) 729
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 1 cut(s) 686
TaaI ACNGT 2 cut(s) 208, 856
TaqI TCGA 7 cut(s) 11, 90, 186, 201, 216, 324, 341
TasI AATT 5 cut(s) 28, 315, 754, 774, 839
TauI GCSGC 3 cut(s) 99, 153, 707
TfiI GAWTC 1 cut(s) 13
TscAI CASTG 2 cut(s) 40, 239
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 5 cut(s) 63, 66, 622, 817, 820
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 5 cut(s) 30, 121, 686, 786, 848
TspRI CASTG 2 cut(s) 40, 239
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 2 cut(s) 754, 774
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 3 cut(s) 480, 680, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.