AT5G06690

Thioredoxin-like 3-1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011087
Physical Location & Seq
Reverse (-)
2060435 .. 2062081
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06690.2

Sequence Viewer

Length: 633 bp
ATGGCATTTGAAAACTTAAAAATATCTCGTCACATATCTTCATCGACAAAAAATTTACTGAAAGCGAAAAAAATAATGGCAGCTTTGGCATCAAACCCCCAAATGCTAACTAGACAAGCTCACGGTAACAAGAAGGAACAATTGTGGAGGAAAGAGAGTTTAAATTTGGAGAAGAAGTGTGGGTTTTGTGTGAGCGTTTACAGTAATGAAAAGCTTGGGAGGTCACATATGGAGAAAGAGTGGAGACTAAAAGCCTTTTGGTCAAACATAGCTCAGCCTACGACTTTGGAGATGGAACCCATTAACAACGTTGAAGAACTCGATGCTGTTCTCTCTCACGCACGCCAACTCTCTCAGCCTATCATCATCGAATGGATGGCTTCTTGGTGTCGAAAATGTATTTACTTGAAGCCTAAGTTGGAGAAATTAGCGGCAGAATATAATAACCGAGCAAAGTTTTACTATGTGGATGTAAACAAGGTCCCTCAAACCTTGGTGAAACGTGGAAACATTTCGAAAATGCCTACTATTCAGTTATGGAAGGAAGATGAGATGAAAGAGGAGGTGATTGGAGGTCACAAAGGATGGCTTGTCATCGAAGAAGTTAGAGAATTGATCAACAAATTTGTCTAG

Protein Analysis

210

Amino Acids

24.52

Weight (kDa)

9.48

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 117 - 165 4.1e-09 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06690 AT5G06690 AT5G06690 AT5G06690
fragaria_vesca FvH4_6g22000
malus_domestica MD12G1055400.v1.1 MD14G1054800.v1.1
prunus_persica Prupe.7G079900_v2.0.a1
pyrus_communis pycom12g04840
rosa_chinensis RchiOBHm_Chr3g0479301
rosa_laevigata RLG00000023585
rosa_multiflora Rmu_sc0026945.1_g000002
rosa_roxburghii Rroxscaffold_6G00402420
rosa_rugosa Rorug03G0174200 Rorug03G0174200
rosa_samantha Rh3AG225300 Rh3BG257800 Rh3CG253500 Rh3DG249700
rosa_wichuraiana Rw3G020150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 431
AclI AACGTT 1 cut(s) 309
AcsI RAATTY 3 cut(s) 52, 163, 623
AgsI TTSAA 3 cut(s) 11, 314, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 4 cut(s) 83, 119, 214, 272
AluI AGCT 4 cut(s) 83, 119, 214, 272
Alw26I GTCTC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 3 cut(s) 52, 163, 623
Asp700I GAANNNNTTC 1 cut(s) 511
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 2 cut(s) 508, 577
AsuII TTCGAA 1 cut(s) 515
AvaII GGWCC 1 cut(s) 481
BbvI GCAGC 1 cut(s) 92
BccI CCATC 3 cut(s) 286, 370, 579
BclI TGATCA 1 cut(s) 615
BcoDI GTCTC 1 cut(s) 238
BfaI CTAG 2 cut(s) 111, 631
BisI GCNGC 2 cut(s) 81, 432
BlpI GCTNAGC 1 cut(s) 273
BlsI GCNGC 2 cut(s) 82, 433
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 2 cut(s) 297, 483
BmsI GCATC 2 cut(s) 98, 313
Bpu1102I GCTNAGC 1 cut(s) 273
Bpu14I TTCGAA 1 cut(s) 515
BsaJI CCNNGG 1 cut(s) 492
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 224, 254
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 3 cut(s) 381, 475, 590
BseMII CTCAG 2 cut(s) 287, 368
BseRI GAGGAG 1 cut(s) 575
BseXI GCAGC 1 cut(s) 92
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 467
Bsp119I TTCGAA 1 cut(s) 515
Bsp143I GATC 1 cut(s) 615
Bsp1720I GCTNAGC 1 cut(s) 273
BspACI CCGC 1 cut(s) 431
BspCNI CTCAG 2 cut(s) 286, 367
BspLI GGNNCC 2 cut(s) 297, 483
BspT104I TTCGAA 1 cut(s) 515
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 1 cut(s) 615
BssT1I CCWWGG 1 cut(s) 492
Bst4CI ACNGT 2 cut(s) 125, 203
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 3 cut(s) 273, 354, 414
BstF5I GGATG 3 cut(s) 381, 475, 590
BstKTI GATC 1 cut(s) 618
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 1 cut(s) 615
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 92
BtsCI GGATG 3 cut(s) 381, 475, 590
Cac8I GCNNGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 481
DdeI CTNAG 3 cut(s) 273, 354, 414
DpnI GATC 1 cut(s) 617
DpnII GATC 1 cut(s) 615
DraI TTTAAA 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 492
Eco47I GGWCC 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
FaiI YATR 7 cut(s) 35, 228, 230, 269, 441, 465, 538
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 1 cut(s) 467
FauNDI CATATG 1 cut(s) 228
FbaI TGATCA 1 cut(s) 615
Fnu4HI GCNGC 2 cut(s) 81, 432
FokI GGATG 3 cut(s) 388, 482, 597
Fsp4HI GCNGC 2 cut(s) 81, 432
FspBI CTAG 2 cut(s) 111, 631
GluI GCNGC 2 cut(s) 81, 432
HindIII AAGCTT 1 cut(s) 212
HphI GGTGA 2 cut(s) 508, 577
Hpy166II GTNNAC 2 cut(s) 199, 475
Hpy8I GTNNAC 2 cut(s) 199, 475
HpyAV CCTTC 2 cut(s) 127, 535
HpyCH4III ACNGT 2 cut(s) 125, 203
HpyCH4IV ACGT 2 cut(s) 309, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 273, 354, 414
HpySE526I ACGT 2 cut(s) 309, 502
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 1 cut(s) 615
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 98, 313
MaeI CTAG 2 cut(s) 111, 631
MaeII ACGT 2 cut(s) 309, 502
MaeIII GTNAC 4 cut(s) 29, 125, 222, 575
MalI GATC 1 cut(s) 617
MboI GATC 1 cut(s) 615
MboII GAAGA 5 cut(s) 30, 184, 326, 557, 611
MfeI CAATTG 1 cut(s) 140
MluCI AATT 6 cut(s) 52, 140, 163, 425, 611, 623
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 6 cut(s) 141, 213, 495, 553, 556, 566
MroXI GAANNNNTTC 1 cut(s) 511
MseI TTAA 3 cut(s) 17, 161, 303
MunI CAATTG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeI CATATG 1 cut(s) 228
NdeII GATC 1 cut(s) 615
NlaIV GGNNCC 2 cut(s) 297, 483
NmuCI GTSAC 3 cut(s) 29, 222, 575
NspV TTCGAA 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 511
PkrI GCNGC 2 cut(s) 82, 433
PpuMI RGGWCCY 1 cut(s) 481
Psp1406I AACGTT 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 297, 483
PspPI GGNCC 1 cut(s) 481
PspPPI RGGWCCY 1 cut(s) 481
SaqAI TTAA 3 cut(s) 17, 161, 303
SatI GCNGC 2 cut(s) 81, 432
Sau3AI GATC 1 cut(s) 615
Sau96I GGNCC 1 cut(s) 481
SfaNI GCATC 2 cut(s) 98, 313
SfuI TTCGAA 1 cut(s) 515
SinI GGWCC 1 cut(s) 481
Sse9I AATT 6 cut(s) 52, 140, 163, 425, 611, 623
SsiI CCGC 1 cut(s) 431
SspMI CTAG 2 cut(s) 111, 631
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 125, 203
TaiI ACGT 2 cut(s) 312, 505
TaqI TCGA 6 cut(s) 44, 321, 369, 391, 515, 597
TasI AATT 6 cut(s) 52, 140, 163, 425, 611, 623
TauI GCSGC 1 cut(s) 434
Tru1I TTAA 3 cut(s) 17, 161, 303
Tru9I TTAA 3 cut(s) 17, 161, 303
TseFI GTSAC 3 cut(s) 29, 222, 575
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 3 cut(s) 29, 222, 575
TspDTI ATGAA 3 cut(s) 30, 222, 569
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 3 cut(s) 52, 163, 623
XmnI GAANNNNTTC 1 cut(s) 511
XspI CTAG 2 cut(s) 111, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.