Rh3BG257800

Thioredoxin-like 3-1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011087
Physical Location & Seq
Reverse (-)
24931656 .. 24933200
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG257800.1

Sequence Viewer

Length: 384 bp
ATGCTCAACAGCTCTCCCAGCCCATCGTTATTGATTGGTCTCTTTCATACTCTCACACTTTCCTACTACTATTTTTTATTATCTAAATTTTTATGGGAGTGTTTTCCTTTTTCGATTTTTGTTAGGATGGCAGCTTGGTGCCGCAAATGCATCTATTTGAAGCCTAAATTGGAGAAATTGGCTGCTGAATATGAAACCAAGGTCAAATTCTATTATGTAGATGTCAACAAGGTGCCTCAAACTCTAGTGAAACGCGGAAACATCTCTAAAATGCCAACCATTCAGTTGTGGAAAGATGGAGAGTTCAAGGAAGAAGTGATTGGAGGTCATAAAGCATGGCTTGTGATTGATGAAGTGCGAGAAATGATCCAAAAATTTGTATGA

Protein Analysis

127

Amino Acids

15.01

Weight (kDa)

9.24

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 43 - 112 9e-14 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06690 AT5G06690 AT5G06690 AT5G06690
fragaria_vesca FvH4_6g22000
malus_domestica MD12G1055400.v1.1 MD14G1054800.v1.1
prunus_persica Prupe.7G079900_v2.0.a1
pyrus_communis pycom12g04840
rosa_chinensis RchiOBHm_Chr3g0479301
rosa_laevigata RLG00000023585
rosa_multiflora Rmu_sc0026945.1_g000002
rosa_roxburghii Rroxscaffold_6G00402420
rosa_rugosa Rorug03G0174200 Rorug03G0174200
rosa_samantha Rh3AG225300 Rh3BG257800 Rh3CG253500 Rh3DG249700
rosa_wichuraiana Rw3G020150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 138, 232
AccII CGCG 1 cut(s) 255
AciI CCGC 2 cut(s) 142, 255
AclWI GGATC 1 cut(s) 361
AcsI RAATTY 3 cut(s) 86, 206, 374
AgsI TTSAA 2 cut(s) 160, 307
AjuI GAANNNNNNNTTGG 6 cut(s) 152, 184, 191, 223, 303, 335
AluBI AGCT 2 cut(s) 12, 134
AluI AGCT 2 cut(s) 12, 134
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 1 cut(s) 361
ApeKI GCWGC 2 cut(s) 131, 182
ApoI RAATTY 3 cut(s) 86, 206, 374
BanI GGYRCC 2 cut(s) 138, 232
BbvI GCAGC 2 cut(s) 143, 169
BccI CCATC 3 cut(s) 31, 121, 290
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 245
BisI GCNGC 3 cut(s) 132, 142, 183
BlsI GCNGC 3 cut(s) 133, 143, 184
BmiI GGNNCC 2 cut(s) 140, 234
BmsI GCATC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 132
BseXI GCAGC 2 cut(s) 143, 169
BseYI CCCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 255
BshNI GGYRCC 2 cut(s) 138, 232
BsmAI GTCTC 1 cut(s) 44
Bso31I GGTCTC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 366
BspACI CCGC 2 cut(s) 142, 255
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 140, 234
BspPI GGATC 1 cut(s) 361
BspT107I GGYRCC 2 cut(s) 138, 232
BspTNI GGTCTC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 2 cut(s) 18, 147
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 143, 169
BtsCI GGATG 1 cut(s) 132
CviAII CATG 1 cut(s) 336
CviJI RGCY 6 cut(s) 12, 21, 134, 163, 182, 340
CviKI_1 RGCY 6 cut(s) 12, 21, 134, 163, 182, 340
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 339
FaiI YATR 7 cut(s) 48, 94, 192, 216, 330, 337, 382
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FatI CATG 1 cut(s) 335
Fnu4HI GCNGC 3 cut(s) 132, 142, 183
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 3 cut(s) 132, 142, 183
FspBI CTAG 1 cut(s) 245
GluI GCNGC 3 cut(s) 132, 142, 183
GsaI CCCAGC 1 cut(s) 21
Hin1II CATG 1 cut(s) 339
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 147
Hsp92II CATG 1 cut(s) 339
Kzo9I GATC 1 cut(s) 366
LpnPI CCDG 1 cut(s) 31
Lsp1109I GCAGC 2 cut(s) 143, 169
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 245
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 1 cut(s) 323
MluCI AATT 5 cut(s) 86, 167, 176, 206, 374
MnlI CCTC 2 cut(s) 246, 317
Mph1103I ATGCAT 1 cut(s) 152
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 18, 147
NdeII GATC 1 cut(s) 366
NlaIII CATG 1 cut(s) 339
NlaIV GGNNCC 2 cut(s) 140, 234
NsiI ATGCAT 1 cut(s) 152
PkrI GCNGC 3 cut(s) 133, 143, 184
PspFI CCCAGC 1 cut(s) 17
PspN4I GGNNCC 2 cut(s) 140, 234
SatI GCNGC 3 cut(s) 132, 142, 183
Sau3AI GATC 1 cut(s) 366
SetI ASST 5 cut(s) 14, 136, 204, 234, 328
SfaNI GCATC 1 cut(s) 159
Sse9I AATT 5 cut(s) 86, 167, 176, 206, 374
SsiI CCGC 2 cut(s) 142, 255
SspMI CTAG 1 cut(s) 245
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 1 cut(s) 113
TasI AATT 5 cut(s) 86, 167, 176, 206, 374
TauI GCSGC 1 cut(s) 144
TseI GCWGC 2 cut(s) 131, 182
TspDTI ATGAA 3 cut(s) 35, 207, 366
XapI RAATTY 3 cut(s) 86, 206, 374
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.