Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011087

Physical Location & Seq

Genomic Coordinates Reverse (-)

24665332 .. 24666729

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG253500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCTGTTCTGGCAGCGAATTCTCACATTTTGTGTGGAGAAGTTCATCGCAGGGAGCATCAACAACAGTTTTCGAGCGCTGCAGGGGGCAGTTGTGTTTTGCCGAAATCTTCTGGGTTTGGTTTCTTCCATAGAAACAGAGACAGCAAGAAGATATTGAGAAGAGACTTGAAAGTAGAGGCCTTTTGGCCAGAGTCCAGACCCACTTTTGTAGAGATGGAACCTATAAACGACTCTGATCACCTTGATCATATATTAAGCCATGCTCAGCAGCTCTCCCAGCCCATCGTTATTGATTGGATGGCAGCTTGGTGCCGCAAATGCATCTATTTGAAGCCCAAATTGGAGAAATTGGCTGCTGAATATGAAACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

125

Amino Acids

14.38

Weight (kDa)

8.4

Isoelectric Point (pI)

58.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	90 - 123	9.8e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06690 AT5G06690 AT5G06690 AT5G06690
fragaria_vesca	FvH4_6g22000
malus_domestica	MD12G1055400.v1.1 MD14G1054800.v1.1
prunus_persica	Prupe.7G079900_v2.0.a1
pyrus_communis	pycom12g04840
rosa_chinensis	RchiOBHm_Chr3g0479301
rosa_laevigata	RLG00000023585
rosa_multiflora	Rmu_sc0026945.1_g000002
rosa_roxburghii	Rroxscaffold_6G00402420
rosa_rugosa	Rorug03G0174200 Rorug03G0174200
rosa_samantha	Rh3AG225300 Rh3BG257800 Rh3CG253500 Rh3DG249700
rosa_wichuraiana	Rw3G020150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	312
AciI	CCGC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	19
AfeI	AGCGCT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	172, 334
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	2 cut(s)	274, 308
AluI	AGCT	2 cut(s)	274, 308
Alw26I	GTCTC	2 cut(s)	135, 159
Aor51HI	AGCGCT	1 cut(s)	79
AoxI	GGCC	2 cut(s)	180, 188
ApeKI	GCWGC	5 cut(s)	14, 80, 271, 305, 356
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	312
BbvI	GCAGC	5 cut(s)	26, 67, 283, 317, 343
BccI	CCATC	3 cut(s)	211, 293, 295
BclI	TGATCA	2 cut(s)	238, 247
BcoDI	GTCTC	2 cut(s)	135, 159
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	6 cut(s)	15, 81, 272, 306, 316, 357
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	6 cut(s)	16, 82, 273, 307, 317, 358
BmiI	GGNNCC	2 cut(s)	222, 314
BmsI	GCATC	2 cut(s)	67, 333
Bpu1102I	GCTNAGC	1 cut(s)	267
BseGI	GGATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	281
BseXI	GCAGC	5 cut(s)	26, 67, 283, 317, 343
BseYI	CCCAGC	1 cut(s)	279
BshFI	GGCC	2 cut(s)	182, 190
BshNI	GGYRCC	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	135, 159
BsnI	GGCC	2 cut(s)	182, 190
Bsp143I	GATC	2 cut(s)	238, 247
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	2 cut(s)	182, 190
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	222, 314
BspMAI	CTGCAG	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	312
BssMI	GATC	2 cut(s)	238, 247
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	241, 250
BstMAI	GTCTC	2 cut(s)	135, 159
BstMBI	GATC	2 cut(s)	238, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 321
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	5 cut(s)	26, 67, 283, 317, 343
BsuRI	GGCC	2 cut(s)	182, 190
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	306
CfoI	GCGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	8 cut(s)	182, 190, 261, 274, 283, 308, 337, 356
CviKI_1	RGCY	8 cut(s)	182, 190, 261, 274, 283, 308, 337, 356
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	2 cut(s)	240, 249
DpnII	GATC	2 cut(s)	238, 247
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	182
Eco47III	AGCGCT	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	326
FaeI	CATG	1 cut(s)	266
FaiI	YATR	6 cut(s)	132, 227, 252, 254, 264, 366
FatI	CATG	1 cut(s)	262
FbaI	TGATCA	2 cut(s)	238, 247
Fnu4HI	GCNGC	6 cut(s)	15, 81, 272, 306, 316, 357
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	6 cut(s)	15, 81, 272, 306, 316, 357
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	6 cut(s)	15, 81, 272, 306, 316, 357
GsaI	CCCAGC	1 cut(s)	283
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	182, 190
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	2 cut(s)	194, 233
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	83, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 321
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	2 cut(s)	238, 247
Kzo9I	GATC	2 cut(s)	238, 247
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	6 cut(s)	37, 69, 99, 204, 211, 293
Lsp1109I	GCAGC	5 cut(s)	26, 67, 283, 317, 343
LweI	GCATC	2 cut(s)	67, 333
MalI	GATC	2 cut(s)	240, 249
MboI	GATC	2 cut(s)	238, 247
MboII	GAAGA	4 cut(s)	102, 118, 163, 174
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	3 cut(s)	19, 341, 350
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	203, 227
MnlI	CCTC	1 cut(s)	172
Mox20I	TGGCCA	1 cut(s)	190
Mph1103I	ATGCAT	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	280, 321
NdeII	GATC	2 cut(s)	238, 247
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	2 cut(s)	222, 314
NsiI	ATGCAT	1 cut(s)	326
PceI	AGGCCT	1 cut(s)	182
PkrI	GCNGC	6 cut(s)	16, 82, 273, 307, 317, 358
PleI	GAGTC	2 cut(s)	202, 227
PpsI	GAGTC	2 cut(s)	202, 227
PspFI	CCCAGC	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	222, 314
PstI	CTGCAG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	6 cut(s)	15, 81, 272, 306, 316, 357
Sau3AI	GATC	2 cut(s)	238, 247
SchI	GAGTC	2 cut(s)	203, 227
SetI	ASST	4 cut(s)	226, 246, 276, 310
SfaNI	GCATC	2 cut(s)	67, 333
SfcI	CTRYAG	1 cut(s)	81
Sse9I	AATT	3 cut(s)	19, 341, 350
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	316
StuI	AGGCCT	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	74
TasI	AATT	3 cut(s)	19, 341, 350
TauI	GCSGC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TseI	GCWGC	5 cut(s)	14, 80, 271, 305, 356
TspDTI	ATGAA	1 cut(s)	35
XapI	RAATTY	1 cut(s)	19
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.